psbE-psbL and ndhA Intron, the Promising Plastid DNA Barcode of Fagopyrum.

Abstract:

:Buckwheat is an important functional food material with high nutritional value. However, it is still a difficult task for the taxonomy studies of wild buckwheat that are only based on morphology. In order to demonstrate the most efficient DNA barcode in the phylogenetic research of buckwheat, promote the investigation of wild buckwheat, and also reveal the phylogenetic relationship between Fagopyrum species, psbE-psbL and ndhA intron were validated here, which previously have been proved to be promising DNA barcode candidates for phylogenetic studies in genera Fagopyrum. Meanwhile, ndhA intron + psbE-psbL and matK + psbE-psbL could distinguish the relationship between species clearly. Combining the results of morphology and molecular markers, we suggested the buckwheat species should be divided into two subgroups, one subgroup consisted of F. tataricum, F. esculentum, F. cymosum and its related wild species, and the other subgroup included other wild buckwheat species. Our results could fulfill molecular markers of taxonomy research in genera Fagopyrum, promote wild buckwheat species identification, and assist in the use of wild buckwheat resources in the future. Additionally, the phylogenetic relationship revealed here could provide valuable information for molecular breeding of buckwheat and provide reference for inter-species hybridization.

journal_name

Int J Mol Sci

authors

Huang Y,Li Z,Wang C,Zou C,Wen W,Shao J,Zhu X

doi

10.3390/ijms20143455

subject

Has Abstract

pub_date

2019-07-14 00:00:00

issue

14

issn

1422-0067

pii

ijms20143455

journal_volume

20

pub_type

杂志文章
  • Application of the SwissDrugDesign Online Resources in Virtual Screening.

    abstract::SwissDrugDesign is an important initiative led by the Molecular Modeling Group of the SIB Swiss Institute of Bioinformatics. This project provides a collection of freely available online tools for computer-aided drug design. Some of these web-based methods, i.e., SwissSimilarity and SwissTargetPrediction, were especia...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20184612

    authors: Daina A,Zoete V

    更新日期:2019-09-18 00:00:00

  • Berry phenolics of grapevine under challenging environments.

    abstract::Plant phenolics have been for many years a theme of major scientific and applied interest. Grape berry phenolics contribute to organoleptic properties, color and protection against environmental challenges. Climate change has already caused significant warming in most grape-growing areas of the world, and the climatic...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms140918711

    authors: Teixeira A,Eiras-Dias J,Castellarin SD,Gerós H

    更新日期:2013-09-11 00:00:00

  • General and Target-Specific DExD/H RNA Helicases in Eukaryotic Translation Initiation.

    abstract::DExD (DDX)- and DExH (DHX)-box RNA helicases, named after their Asp-Glu-x-Asp/His motifs, are integral to almost all RNA metabolic processes in eukaryotic cells. They play myriad roles in processes ranging from transcription and mRNA-protein complex remodeling, to RNA decay and translation. This last facet, translatio...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21124402

    authors: Shen L,Pelletier J

    更新日期:2020-06-20 00:00:00

  • Metformin: An Old Drug with New Applications.

    abstract::Metformin is a biguanide drug that has been used to treat type 2 diabetes mellitus for more than 60 years. The United Kingdom Prospective Diabetic Study (UKPDS) has shown metformin to improve mortality rates in diabetes patients, and recent studies suggest metformin has additional effects in treating cancer, obesity, ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19102863

    authors: Zhou J,Massey S,Story D,Li L

    更新日期:2018-09-21 00:00:00

  • GroEL-assisted protein folding: does it occur within the chaperonin inner cavity?

    abstract::The folding of protein molecules in the GroEL inner cavity under the co-chaperonin GroES lid is widely accepted as a crucial event of GroEL-assisted protein folding. This review is focused on the data showing that GroEL-assisted protein folding may proceed out of the complex with the chaperonin. The models of GroEL-as...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms10052066

    authors: Marchenkov VV,Semisotnov GV

    更新日期:2009-05-12 00:00:00

  • Disulfide Bond Engineering of an Endoglucanase from Penicillium verruculosum to Improve Its Thermostability.

    abstract::Endoglucanases (EGLs) are important components of multienzyme cocktails used in the production of a wide variety of fine and bulk chemicals from lignocellulosic feedstocks. However, a low thermostability and the loss of catalytic performance of EGLs at industrially required temperatures limit their commercial applicat...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20071602

    authors: Bashirova A,Pramanik S,Volkov P,Rozhkova A,Nemashkalov V,Zorov I,Gusakov A,Sinitsyn A,Schwaneberg U,Davari MD

    更新日期:2019-03-30 00:00:00

  • Human Chorionic Gonadotrophin as a Possible Mediator of Leiomyoma Growth during Pregnancy: Molecular Mechanisms.

    abstract::Uterine fibroids are the most common gynecologic benign tumors. Studies supporting a strong pregnancy-related growth of leiomyomas generally claimed a crucial role of sex steroid hormones. However, sex steroids are unlikely the unique actors involved as estrogen and progesterone achieve a pick serum concentration in t...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18092014

    authors: Sarais V,Cermisoni GC,Schimberni M,Alteri A,Papaleo E,Somigliana E,Vigano' P

    更新日期:2017-09-20 00:00:00

  • G Protein-Coupled Receptor Signaling in Stem Cells and Cancer.

    abstract::G protein-coupled receptors (GPCRs) are a large superfamily of cell-surface signaling proteins that bind extracellular ligands and transduce signals into cells via heterotrimeric G proteins. GPCRs are highly tractable drug targets. Aberrant expression of GPCRs and G proteins has been observed in various cancers and th...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17050707

    authors: Lynch JR,Wang JY

    更新日期:2016-05-11 00:00:00

  • Bone Marrow Aspirate Concentrate for the Treatment of Avascular Meniscus Tears in a One-Step Procedure-Evaluation of an In Vivo Model.

    abstract::Avascular meniscus tears show poor intrinsic regenerative potential. Thus, lesions within this area predispose the patient to developing knee osteoarthritis. Current research focuses on regenerative approaches using growth factors or mesenchymal stem cells (MSCs) to enhance healing capacity within the avascular menisc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20051120

    authors: Koch M,Hammer S,Fuellerer J,Lang S,Pfeifer CG,Pattappa G,Weber J,Loibl M,Nerlich M,Angele P,Zellner J

    更新日期:2019-03-05 00:00:00

  • Immobilization of Lipase A from Candida antarctica onto Chitosan-Coated Magnetic Nanoparticles.

    abstract::In this communication, lipase A from Candida antarctica (CALA) was immobilized by covalent bonding on magnetic nanoparticles coated with chitosan and activated with glutaraldehyde, labelled CALA-MNP, (immobilization parameters: 84.1% ± 1.0 for immobilization yield and 208.0 ± 3.0 U/g ± 1.1 for derivative activity). CA...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20164018

    authors: Monteiro RRC,Lima PJM,Pinheiro BB,Freire TM,Dutra LMU,Fechine PBA,Gonçalves LRB,de Souza MCM,Dos Santos JCS,Fernandez-Lafuente R

    更新日期:2019-08-17 00:00:00

  • The Neosartorya fischeri Antifungal Protein 2 (NFAP2): A New Potential Weapon against Multidrug-Resistant Candida auris Biofilms.

    abstract::Candida auris is a potential multidrug-resistant pathogen able to persist on indwelling devices as a biofilm, which serve as a source of catheter-associated infections. Neosartorya fischeri antifungal protein 2 (NFAP2) is a cysteine-rich, cationic protein with potent anti-Candida activity. We studied the in vitro acti...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22020771

    authors: Kovács R,Nagy F,Tóth Z,Forgács L,Tóth L,Váradi G,Tóth GK,Vadászi K,Borman AM,Majoros L,Galgóczy L

    更新日期:2021-01-14 00:00:00

  • Targeting Cancer Stem Cells to Overcome Chemoresistance.

    abstract::Cancers are heterogeneous at the cell level, and the mechanisms leading to cancer heterogeneity could be clonal evolution or cancer stem cells. Cancer stem cells are resistant to most anti-cancer treatments and could be preferential targets to reverse this resistance, either targeting stemness pathways or cancer stem ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19124036

    authors: Nunes T,Hamdan D,Leboeuf C,El Bouchtaoui M,Gapihan G,Nguyen TT,Meles S,Angeli E,Ratajczak P,Lu H,Di Benedetto M,Bousquet G,Janin A

    更新日期:2018-12-13 00:00:00

  • Mitochondrial Carriers for Aspartate, Glutamate and Other Amino Acids: A Review.

    abstract::Members of the mitochondrial carrier (MC) protein family transport various molecules across the mitochondrial inner membrane to interlink steps of metabolic pathways and biochemical processes that take place in different compartments; i.e., are localized partly inside and outside the mitochondrial matrix. MC substrate...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20184456

    authors: Monné M,Vozza A,Lasorsa FM,Porcelli V,Palmieri F

    更新日期:2019-09-10 00:00:00

  • From protein engineering to immobilization: promising strategies for the upgrade of industrial enzymes.

    abstract::Enzymes found in nature have been exploited in industry due to their inherent catalytic properties in complex chemical processes under mild experimental and environmental conditions. The desired industrial goal is often difficult to achieve using the native form of the enzyme. Recent developments in protein engineeri...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms14011232

    authors: Singh RK,Tiwari MK,Singh R,Lee JK

    更新日期:2013-01-10 00:00:00

  • Citrate-Induced p85α⁻PTEN Complex Formation Causes G2/M Phase Arrest in Human Pharyngeal Squamous Carcinoma Cell Lines.

    abstract::Citrate is a key intermediate of the tricarboxylic acid cycle and acts as an allosteric signal to regulate the production of cellular ATP. An elevated cytosolic citrate concentration inhibits growth in several types of human cancer cells; however, the underlying mechanism by which citrate induces the growth arrest of ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20092105

    authors: Hung KC,Wang SG,Lin ML,Chen SS

    更新日期:2019-04-29 00:00:00

  • New antifungal pyranoisoflavone from Ficus tikoua Bur.

    abstract::Considering the undesirable attributes of synthetic fungicides and the availability of Ficus species in China, the stem of Ficus tikoua Bur. was investigated. One new antifungal pyranoisoflavone, 5,3',4'-trihydroxy-2″,2″-dimethylpyrano (5″,6″:7,8) isoflavone (1), together with two known isoflavones, wighteone (2) and ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13067375

    authors: Wei S,Wu W,Ji Z

    更新日期:2012-01-01 00:00:00

  • Adiponectin in Chronic Kidney Disease.

    abstract::Adiponectin is the adipokine associated with insulin sensitization, reducing liver gluconeogenesis, and increasing fatty acid oxidation and glucose uptake. Adiponectin is present in the kidneys, mainly in the arterial endothelium and smooth muscle cells, as well as in the capillary endothelium, and might be considered...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21249375

    authors: Przybyciński J,Dziedziejko V,Puchałowicz K,Domański L,Pawlik A

    更新日期:2020-12-09 00:00:00

  • MAPK Pathway under Chronic Copper Excess in Green Macroalgae (Chlorophyta): Involvement in the Regulation of Detoxification Mechanisms.

    abstract::Following the physiological complementary/parallel Celis-Plá et al., by inhibiting extracellular signal regulated kinases (ERK), c-Jun N-terminal kinases (JNK), and cytokinin specific binding protein (p38), we assessed the role of the mitogen-activated protein kinases (MAPK) pathway in detoxification responses mediate...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20184546

    authors: Rodríguez-Rojas F,Celis-Plá PSM,Méndez L,Moenne F,Muñoz PT,Lobos MG,Díaz P,Sánchez-Lizaso JL,Brown MT,Moenne A,Sáez CA

    更新日期:2019-09-13 00:00:00

  • Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.

    abstract::Plastid-nucleus-located WHIRLY1 protein plays a role in regulating leaf senescence and is believed to associate with the increase of reactive oxygen species delivered from redox state of the photosynthetic electron transport chain. In order to make sure whether WHIRLY1 plays a role in photosynthesis, in this study, th...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18112352

    authors: Huang D,Lin W,Deng B,Ren Y,Miao Y

    更新日期:2017-11-07 00:00:00

  • A Central Bioactive Region of LTBP-2 Stimulates the Expression of TGF-β1 in Fibroblasts via Akt and p38 Signalling Pathways.

    abstract::Latent transforming growth factor-β-1 binding protein-2 (LTBP-2) belongs to the LTBP-fibrillin superfamily of extracellular proteins. Unlike other LTBPs, LTBP-2 does not covalently bind transforming growth factor-β1 (TGF-β1) but appears to be implicated in the regulation of TGF-β1 bioactivity, although the mechanisms ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18102114

    authors: Sideek MA,Smith J,Menz C,Adams JRJ,Cowin AJ,Gibson MA

    更新日期:2017-10-09 00:00:00

  • Anti-Apoptotic Effects of Recombinant Human Hepatocyte Growth Factor on Hepatocytes Were Associated with Intrahepatic Hemorrhage Suppression Indicated by the Preservation of Prothrombin Time.

    abstract::Hepatocyte growth factor (HGF) is an endogenously expressed bioactive substance that has a strong anti-apoptotic effect. In this study, we biochemically and histologically characterized the effects of rh-HGF on in vitro human hepatocyte injury and mouse acute liver failure (ALF) models, both of which were induced by a...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20081821

    authors: Motoi S,Toyoda H,Obara T,Ohta E,Arita Y,Negishi K,Moriya K,Kuboi Y,Soejima M,Imai T,Ido A,Tsubouchi H,Kawano T

    更新日期:2019-04-12 00:00:00

  • Hyaluronan-Loaded Liposomal Dexamethasone-Diclofenac Nanoparticles for Local Osteoarthritis Treatment.

    abstract::Osteoarthritis (OA) remains one of the common degenerative joint diseases and a major cause of pain and disability in older adult individuals. Oral administration of non-steroidal anti-inflammatory drugs (NSAIDs) (such as diclofenac, DIC) or intra-articular injected gluco-corticosteroids (such as dexamethasone, DEX) w...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22020665

    authors: Chang MC,Chiang PF,Kuo YJ,Peng CL,Chen KY,Chiang YC

    更新日期:2021-01-11 00:00:00

  • Emerging Role of the Inflammasome and Pyroptosis in Hypertension.

    abstract::Inflammasomes are components of the innate immune response that have recently emerged as crucial controllers of tissue homeostasis. In particular, the nucleotide-binding domain, leucine-rich-containing (NLR) family pyrin domain containing 3 (NLRP3) inflammasome is a complex platform involved in the activation of caspa...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms22031064

    authors: De Miguel C,Pelegrín P,Baroja-Mazo A,Cuevas S

    更新日期:2021-01-21 00:00:00

  • An Integrative Analysis of Transcriptome, Proteome and Hormones Reveals Key Differentially Expressed Genes and Metabolic Pathways Involved in Flower Development in Loquat.

    abstract::Flower development is a vital developmental process in the life cycle of woody perennials, especially fruit trees. Herein, we used transcriptomic, proteomic, and hormone analyses to investigate the key candidate genes/proteins in loquat (Eriobotrya japonica) at the stages of flower bud differentiation (FBD), floral bu...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21145107

    authors: Jing D,Chen W,Hu R,Zhang Y,Xia Y,Wang S,He Q,Guo Q,Liang G

    更新日期:2020-07-20 00:00:00

  • Remodeler Catalyzed Nucleosome Repositioning: Influence of Structure and Stability.

    abstract::The packaging of the eukaryotic genome into chromatin regulates the storage of genetic information, including the access of the cell's DNA metabolism machinery. Indeed, since the processes of DNA replication, translation, and repair require access to the underlying DNA, several mechanisms, both active and passive, hav...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms22010076

    authors: Morgan A,LeGresley S,Fischer C

    更新日期:2020-12-23 00:00:00

  • Therapeutic Potential of Tauroursodeoxycholic Acid for the Treatment of Osteoporosis.

    abstract::Tauroursodeoxycholic acid (TUDCA) is a US FDA-approved hydrophilic bile acid for the treatment of chronic cholestatic liver disease. In the present study, we investigate the effects of TUDCA on the proliferation and differentiation of osteoblasts and its therapeutic effect on a mice model of osteoporosis. Following tr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21124274

    authors: Ahn TK,Kim KT,Joshi HP,Park KH,Kyung JW,Choi UY,Sohn S,Sheen SH,Shin DE,Lee SH,Han IB

    更新日期:2020-06-16 00:00:00

  • Surface Modification by Nano-Structures Reduces Viable Bacterial Biofilm in Aerobic and Anaerobic Environments.

    abstract::Bacterial biofilm formation on wet surfaces represents a significant problem in medicine and environmental sciences. One of the strategies to prevent or eliminate surface adhesion of organisms is surface modification and coating. However, the current coating technologies possess several drawbacks, including limited du...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21197370

    authors: Ya'ari S,Halperin-Sternfeld M,Rosin B,Adler-Abramovich L

    更新日期:2020-10-06 00:00:00

  • Transcriptome Profiling Reveals Transcriptional Regulation by DNA Methyltransferase Inhibitor 5-Aza-2'-Deoxycytidine Enhancing Red Pigmentation in Bagged "Granny Smith" Apples (Malus domestica).

    abstract::The red color of apples (Malus domestica) is an attractive trait for consumers. The green skinned "Granny Smith" cultivar develops red pigmentation after bagging treatment. DNA methylation plays an important role in various developmental processes in plants. To explore the possible functions of DNA methylation in the ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19103133

    authors: Ma C,Liang B,Chang B,Liu L,Yan J,Yang Y,Zhao Z

    更新日期:2018-10-12 00:00:00

  • The Association Between Affective Temperament Traits and Dopamine Genes in Obese Population.

    abstract::Studies indicate the heritable nature of affective temperament, which shows personality traits predisposing to the development of mental disorders. Dopaminergic gene polymorphisms such as DRD4, COMTVal158Met, and DAT1 have been linked to affective disorders in obesity. Due to possible correlation between the aforement...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20081847

    authors: Lesiewska N,Borkowska A,Junik R,Kamińska A,Pulkowska-Ulfig J,Tretyn A,Bieliński M

    更新日期:2019-04-15 00:00:00

  • Genetic differentiation between natural and hatchery stocks of Japanese scallop (Mizuhopecten yessoensis) as revealed by AFLP analysis.

    abstract::Japanese scallop (Mizuhopecten yessoensis) is a cold-tolerant bivalve that was introduced to China for aquaculture in 1982. In this study, amplified fragment length polymorphism (AFLP) markers were used to investigate levels of genetic diversity within M. yessoensis cultured stocks and compare them with wild populatio...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms11103933

    authors: Liu WD,Li HJ,Bao XB,Gao XG,Li YF,He CB,Liu ZJ

    更新日期:2010-10-15 00:00:00