Structural changes within the bifunctional cryptochrome/photolyase CraCRY upon blue light excitation.

Abstract:

:Cryptochromes (CRYs) are an ubiquitously occurring class of photoreceptors, which are important for regulating the circadian rhythm of animals via a time-delayed transcription-translation feedback loop (TTFL). Due to their protein architecture and common FAD chromophore, they belong to the same superfamily as photolyases (PHLs), an enzyme class that repairs UV-induced DNA lesions upon blue light absorption. Apart from their different functions the only prominent structural difference between CRY and PHL is the highly variable C-terminal extension (CTE) of the former. The nature of the CTE is still unclear and highly speculated. In this study, we show by hydrogen/deuterium exchange and subsequent mass-spectrometric analysis that the CTE of the animal-like cryptochrome from the green algae Chlamydomonas reinhardtii (CraCRY) binds to the surface of the photolyase homology region, which flanks the DNA binding site. We also compared the fully oxidized and fully reduced states of the flavoprotein and designed a tool, so called light chamber, for automated HDX-MS measurements of photoreceptors in defined photostates. We could observe some striking differences between the two photostates and propose a model for light-dependent switching of this bifunctional cryptochrome.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Franz-Badur S,Penner A,Straß S,von Horsten S,Linne U,Essen LO

doi

10.1038/s41598-019-45885-7

subject

Has Abstract

pub_date

2019-07-09 00:00:00

pages

9896

issue

1

issn

2045-2322

pii

10.1038/s41598-019-45885-7

journal_volume

9

pub_type

杂志文章
  • Chemical and structural stability of lithium-ion battery electrode materials under electron beam.

    abstract::The investigation of chemical and structural dynamics in battery materials is essential to elucidation of structure-property relationships for rational design of advanced battery materials. Spatially resolved techniques, such as scanning/transmission electron microscopy (S/TEM), are widely applied to address this chal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05694

    authors: Lin F,Markus IM,Doeff MM,Xin HL

    更新日期:2014-07-16 00:00:00

  • Enhanced STAT3 phosphorylation and PD-L1 expression in myeloid dendritic cells indicate impaired IL-27Ralpha signaling in type 1 diabetes.

    abstract::Interleukin 27 (IL-27), a member of the IL-12 family, is important for T cell differentiation; however, little is known about its effect on dendritic cells (DCs). IL-27 can activate multiple signaling cascades, including the JAK/STAT pathway, and depending on the setting it can both promote and antagonize inflammatory...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57507-8

    authors: Parackova Z,Vrabcova P,Zentsova I,Kayserova J,Richtrova I,Sojka L,Stechova K,Sumnik Z,Sediva A

    更新日期:2020-01-16 00:00:00

  • Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding.

    abstract::Dichapetalum cymosum produces the toxic fluorinated metabolite, fluoroacetate, presumably as a defence mechanism. Given the rarity of fluorinated metabolites in nature, the biosynthetic origin and function of fluoroacetate have been of particular interest. However, the mechanism for fluorination in D. cymosum was neve...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77598-7

    authors: Sooklal SA,Mpangase PT,Tomescu MS,Aron S,Hazelhurst S,Archer RH,Rumbold K

    更新日期:2020-11-25 00:00:00

  • Amyloid precursor protein expression and processing are differentially regulated during cortical neuron differentiation.

    abstract::Amyloid precursor protein (APP) and its cleavage product amyloid β (Aβ) have been thoroughly studied in Alzheimer's disease. However, APP also appears to be important for neuronal development. Differentiation of induced pluripotent stem cells (iPSCs) towards cortical neurons enables in vitro mechanistic studies on hum...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29200

    authors: Bergström P,Agholme L,Nazir FH,Satir TM,Toombs J,Wellington H,Strandberg J,Bontell TO,Kvartsberg H,Holmström M,Boreström C,Simonsson S,Kunath T,Lindahl A,Blennow K,Hanse E,Portelius E,Wray S,Zetterberg H

    更新日期:2016-07-07 00:00:00

  • Rosuvastatin Prevents the Exacerbation of Atherosclerosis in Ligature-Induced Periodontal Disease Mouse Model.

    abstract::Periodontitis is a local and systemic inflammatory condition and a risk factor of atherosclerosis, but no studies investigated the effect of a statin on atherogenesis affected by severe periodontitis. In this study, we investigated the effect of rosuvastatin (RSV) on atherogenesis in Apolipoprotein E-deficient mice re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63350-8

    authors: Suh JS,Lee SH,Fouladian Z,Lee JY,Kim T,Kang MK,Lusis AJ,Boström KI,Kim RH,Park NH

    更新日期:2020-04-14 00:00:00

  • Radiological characterization of gilthead seabream (Sparus aurata) fat by X-ray micro-computed tomography.

    abstract::In fish, the fat content contributes to promoting the nutritional and organoleptic characteristics of the flesh, which is crucial for consumer acceptance. Methods to predict the fat in fish are important in nutritional and physiological research, where body content is traditionally determined by dissection followed by...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67435-2

    authors: Ceballos-Francisco D,García-Carrillo N,Cuesta A,Esteban MÁ

    更新日期:2020-06-29 00:00:00

  • Ferroelectric Tunneling Junctions Based on Aluminum Oxide/ Zirconium-Doped Hafnium Oxide for Neuromorphic Computing.

    abstract::Ferroelectric tunneling junctions (FTJs) with tunable tunneling electroresistance (TER) are promising for many emerging applications, including non-volatile memories and neurosynaptic computing. One of the key challenges in FTJs is the balance between the polarization value and the tunneling current. In order to achie...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56816-x

    authors: Ryu H,Wu H,Rao F,Zhu W

    更新日期:2019-12-31 00:00:00

  • A Flexible Electret Membrane with Persistent Electrostatic Effect and Resistance to Harsh Environment for Energy Harvesting.

    abstract::A novel flexible electret membrane, exhibiting persistent electrostatic effect, distinctive temperature stability and outstanding capability of resistance to harsh environment and fatigue, is demonstrated by experiment. Its excellent electret performance is correlated to the synergy of three factors, which are space c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07747-y

    authors: Huiming X,Gangjin C,Xumin C,Zhi C

    更新日期:2017-08-16 00:00:00

  • The putative Na⁺/Cl⁻-dependent neurotransmitter/osmolyte transporter inebriated in the Drosophila hindgut is essential for the maintenance of systemic water homeostasis.

    abstract::Most organisms are able to maintain systemic water homeostasis over a wide range of external or dietary osmolarities. The excretory system, composed of the kidneys in mammals and the Malpighian tubules and hindgut in insects, can increase water conservation and absorption to maintain systemic water homeostasis, which ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07993

    authors: Luan Z,Quigley C,Li HS

    更新日期:2015-01-23 00:00:00

  • Solar-light photocatalytic disinfection using crystalline/amorphous low energy bandgap reduced TiO2.

    abstract::A generation of reactive oxygen species (ROS) from TiO2 under solar light has been long sought since the ROS can disinfect organic pollutants. We found that newly developed crystalline/amorphous reduced TiO2 (rTiO2) that has low energy bandgap can effectively generate ROS under solar light and successfully remove a bl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25212

    authors: Kim Y,Hwang HM,Wang L,Kim I,Yoon Y,Lee H

    更新日期:2016-04-28 00:00:00

  • Internal fixation treatments for intertrochanteric fracture: a systematic review and meta-analysis of randomized evidence.

    abstract::The relative effects of internal fixation strategies for intertrochanteric fracture after operation remain uncertain. We conducted a systematic review and meta-analysis of randomized controlled trials (RCTs) to address this important issue. We searched PubMed, EMBASE and CENTRAL for RCTs that compared different intern...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析,评审

    doi:10.1038/srep18195

    authors: Yu J,Zhang C,Li L,Kwong JS,Xue L,Zeng X,Tang L,Li Y,Sun X

    更新日期:2015-12-11 00:00:00

  • Therapeutic effects of the PKR inhibitor C16 suppressing tumor proliferation and angiogenesis in hepatocellular carcinoma in vitro and in vivo.

    abstract::The therapeutic effects of C16, which is an inhibitor of RNA-dependent protein kinase (PKR), on growth of hepatocellular carcinoma (HCC) cells and tumor progression in vitro and in vivo were evaluated. Huh7 cells, a human HCC cell line, were used. The effects of C16 on cell viability were evaluated with the MTT assay,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61579-x

    authors: Watanabe T,Ninomiya H,Saitou T,Takanezawa S,Yamamoto S,Imai Y,Yoshida O,Kawakami R,Hirooka M,Abe M,Imamura T,Hiasa Y

    更新日期:2020-03-20 00:00:00

  • Fabrication of self-assembled spherical Gold Particles by pulsed UV Laser Treatment.

    abstract::We report on the fabrication of spherical Au spheres by pulsed laser treatment using a KrF excimer laser (248 nm, 25 ns) under ambient conditions as a fast and high throughput fabrication technique. The presented experiments were realized using initial Au layers of 100 nm thickness deposited on optically transparent a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29661-7

    authors: Schmidl G,Jia G,Gawlik A,Kreusch J,Schmidl F,Dellith J,Dathe A,Lin ZH,Huang JS,Plentz J

    更新日期:2018-07-26 00:00:00

  • Dynamic changes of phenotypically different circulating tumor cells sub-populations in patients with recurrent/refractory small cell lung cancer treated with pazopanib.

    abstract::The aim of the study was to investigate the effect of 2nd-line pazopanib on the different CTCs subpopulations in SCLC patients and evaluate the clinical relevance of their changes. Different CTCs subpopulations were evaluated before pazopanib initiation (n = 56 patients), after one-cycle (n = 35) and on disease progre...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/s41598-018-20502-1

    authors: Messaritakis I,Politaki E,Koinis F,Stoltidis D,Apostolaki S,Plataki M,Dermitzaki EK,Georgoulias V,Kotsakis A

    更新日期:2018-02-02 00:00:00

  • Self in vivo production of a synthetic biological drug CTLA4Ig using a minicircle vector.

    abstract::Cytotoxic T lymphocyte-associated antigen 4 immunoglobulin fusion protein (CTLA4Ig, abatacept) is a B7/CD28 costimulation inhibitor that can ward off the immune response by preventing the activation of naïve T cells. This therapeutic agent is administered to patients with autoimmune diseases such as rheumatoid arthrit...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06935

    authors: Rim YA,Yi H,Kim Y,Park N,Jung H,Kim J,Jung SM,Park SH,Ju JH

    更新日期:2014-11-06 00:00:00

  • The effects of heterogeneity on stochastic cycles in epidemics.

    abstract::Models of biological processes are often subject to different sources of noise. Developing an understanding of the combined effects of different types of uncertainty is an open challenge. In this paper, we study a variant of the susceptible-infective-recovered model of epidemic spread, which combines both agent-to-age...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12606-x

    authors: Herrerías-Azcué F,Galla T

    更新日期:2017-10-11 00:00:00

  • Fluvoxamine stimulates oligodendrogenesis of cultured neural stem cells and attenuates inflammation and demyelination in an animal model of multiple sclerosis.

    abstract::Multiple Sclerosis (MS) require medications controlling severity of the pathology and depression, affecting more than half of the patients. In this study, the effect of antidepressant drug fluvoxamine, a selective serotonin reuptake inhibitor, was investigated in vitro and in vivo. Nanomolar concentrations of fluvoxam...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04968-z

    authors: Ghareghani M,Zibara K,Sadeghi H,Dokoohaki S,Sadeghi H,Aryanpour R,Ghanbari A

    更新日期:2017-07-07 00:00:00

  • Analysis of repetitive element expression in the blood and skin of patients with Parkinson's disease identifies differential expression of satellite elements.

    abstract::Repetitive elements (RE) constitute the majority of the human genome and have a range of functions both structural and regulatory on genomic function and gene expression. RE overexpression has been observed in several neurodegenerative diseases, consistent with the observation of aberrant expression of RE posing a mut...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40869-z

    authors: Billingsley KJ,Lättekivi F,Planken A,Reimann E,Kurvits L,Kadastik-Eerme L,Kasterpalu KM,Bubb VJ,Quinn JP,Kõks S,Taba P

    更新日期:2019-03-13 00:00:00

  • Femtosecond laser processing by using patterned vector optical fields.

    abstract::We present and demonstrate an approach for femtosecond laser processing by using patterned vector optical fields (PVOFs) composed of multiple individual vector optical fields. The PVOFs can be flexibly engineered due to the diversity of individual vector optical fields in spatial arrangement and distribution of states...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02281

    authors: Lou K,Qian SX,Ren ZC,Tu C,Li Y,Wang HT

    更新日期:2013-01-01 00:00:00

  • Hyperactivation of mTORC1 disrupts cellular homeostasis in cerebellar Purkinje cells.

    abstract::Mammalian target of rapamycin (mTOR) is a central regulator of cellular metabolism. The importance of mTORC1 signaling in neuronal development and functions has been highlighted by its strong relationship with many neurological and neuropsychiatric diseases. Previous studies demonstrated that hyperactivation of mTORC1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38730-4

    authors: Sakai Y,Kassai H,Nakayama H,Fukaya M,Maeda T,Nakao K,Hashimoto K,Sakagami H,Kano M,Aiba A

    更新日期:2019-02-26 00:00:00

  • Suit-type Wearable Robot Powered by Shape-memory-alloy-based Fabric Muscle.

    abstract::A suit-type wearable robot (STWR) is a new type of soft wearable robot (SWR) that can be worn easily anywhere and anytime to assist the muscular strength of wearers because it can be worn like normal clothes and is comfortable to wear even with no power supply. This paper proposes an STWR, in which a shape-memory-allo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45722-x

    authors: Park SJ,Park CH

    更新日期:2019-06-24 00:00:00

  • Interactive machine learning for soybean seed and seedling quality classification.

    abstract::New computer vision solutions combined with artificial intelligence algorithms can help recognize patterns in biological images, reducing subjectivity and optimizing the analysis process. The aim of this study was to propose an approach based on interactive and traditional machine learning methods to classify soybean ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68273-y

    authors: de Medeiros AD,Capobiango NP,da Silva JM,da Silva LJ,da Silva CB,Dos Santos Dias DCF

    更新日期:2020-07-09 00:00:00

  • Comprehensive validation of T- and B-cell deficiency in rag1-null zebrafish: Implication for the robust innate defense mechanisms of teleosts.

    abstract::rag1 -/- zebrafish have been employed in immunological research as a useful immunodeficient vertebrate model, but with only fragmentary evidence for the lack of functional adaptive immunity. rag1-null zebrafish exhibit differences from their human and murine counterparts in that they can be maintained without any spec...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08000-2

    authors: Tokunaga Y,Shirouzu M,Sugahara R,Yoshiura Y,Kiryu I,Ototake M,Nagasawa T,Somamoto T,Nakao M

    更新日期:2017-08-08 00:00:00

  • Genetics of body fat mass and related traits in a pig population selected for leanness.

    abstract::Obesity is characterized as the excessive accumulation of body fat and has a complex genetic foundation in humans including monogenic high-risk mutations and polygenic contributions. Domestic pigs represent a valuable model on an obesity-promoting high-caloric diet while constantly evaluated for body characteristics. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08961-4

    authors: Reyer H,Varley PF,Murani E,Ponsuksili S,Wimmers K

    更新日期:2017-08-22 00:00:00

  • Low temperature synthesis of NbC/C nano-composites as visible light photoactive catalyst.

    abstract::A facile carbothermal route was adopted to obtain niobium carbide nanoparticles (NPs) embedded in carbon network from Nb2O5 to study photocatalytic behavior. Optimization of synthesis parameters to obtain single phase NbC NPs has been successfully done. The phase identification, morphology and nature of carbon were de...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31989-z

    authors: Gupta A,Mittal M,Singh MK,Suib SL,Pandey OP

    更新日期:2018-09-11 00:00:00

  • Escherichia coli and Salmonella Enteritidis dual-species biofilms: interspecies interactions and antibiofilm efficacy of phages.

    abstract::Escherichia coli and Salmonella Enteritidis are foodborne pathogens forming challenging biofilms that contribute to their virulence, antimicrobial resistance, and survival on surfaces. Interspecies interactions occur between species in mixed biofilms promoting different outcomes to each species. Here we describe the i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54847-y

    authors: Milho C,Silva MD,Alves D,Oliveira H,Sousa C,Pastrana LM,Azeredo J,Sillankorva S

    更新日期:2019-12-03 00:00:00

  • Extracellular vesicles from T cells overexpress miR-146b-5p in HIV-1 infection and repress endothelial activation.

    abstract::Human immunodeficiency virus type 1 (HIV-1) infection promotes a generalized activation of host responses that involves not only CD4 T cells, but also cells of the microenvironment, which are not directly infected, such as endothelial cells. The mechanisms triggering HIV-1-associated vascular alterations remain poorly...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44743-w

    authors: Balducci E,Leroyer AS,Lacroix R,Robert S,Todorova D,Simoncini S,Lyonnet L,Chareyre C,Zaegel-Faucher O,Micallef J,Poizot-Martin I,Roll P,Dignat-George F

    更新日期:2019-07-16 00:00:00

  • Simulating photoacoustic waves produced by individual biological particles with spheroidal wave functions.

    abstract::Under the usual approximation of treating a biological particle as a spheroidal droplet, we consider the analysis of its size and shape with the high frequency photoacoustics and develop a numerical method which can simulate its characteristic photoacoustic waves. This numerical method is based on the calculation of s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14801

    authors: Li Y,Fang H,Min C,Yuan X

    更新日期:2015-10-07 00:00:00

  • Interleukin-12 and -23 blockade mitigates elastase-induced abdominal aortic aneurysm.

    abstract::Macrophages play an important role in the inflammatory process that contributes to the development of abdominal aortic aneurysm (AAA). Studies of human and mouse AAA tissue reveal expanded populations of macrophages producing an abundance of pro-inflammatory cytokines, including TNF-α, IL-12p40 and high level of metal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46909-y

    authors: Yan H,Hu Y,Akk A,Ye K,Bacon J,Pham CTN

    更新日期:2019-07-18 00:00:00

  • Spindle cell sarcoma: a SEER population-based analysis.

    abstract::Due to the substantial limitation of study population, Spindle cell sarcoma (SCS) was unexplored comprehensively. In this study, we investigated the clinical characteristics and disease specific prognostic factors of SCS. 3299 SCS cases were identified and extracted from Surveillance, Epidemiology, and End Results (SE...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23145-4

    authors: Feng L,Wang M,Yibulayin F,Zhang H,Yang YL,Ren F,Wushou A

    更新日期:2018-03-22 00:00:00