Multiple Pleomorphic Tetramers of Thermostable Direct Hemolysin from Grimontia hollisae in Exerting Hemolysis and Membrane Binding.

Abstract:

:Oligomerization of protein into specific quaternary structures plays important biological functions, including regulation of gene expression, enzymes activity, and cell-cell interactions. Here, we report the determination of two crystal structures of the Grimontia hollisae (formally described as Vibrio hollisae) thermostable direct hemolysin (Gh-TDH), a pore-forming toxin. The toxin crystalized in the same space group of P21212, but with two different crystal packing patterns, each revealing three consistent tetrameric oligomerization forms called Oligomer-I, -II, and -III. A central pore with comparable depth of ~50 Å but differing in shape and size was observed in all determined toxin tetrameric oligomers. A common motif of a toxin dimer was found in all determined structures, suggesting a plausible minimum functional unit within the tetrameric structure in cell membrane binding and possible hemolytic activity. Our results show that bacterial toxins may form a single or highly symmetric oligomerization state when exerting their biological functions. The dynamic nature of multiple symmetric oligomers formed upon release of the toxin may open a niche for bacteria survival in harsh living environments.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Wang YK,Huang SC,Chang CY,Huang WT,Liao MJ,Yip BS,Chou FP,Li TT,Wu TK

doi

10.1038/s41598-019-46354-x

subject

Has Abstract

pub_date

2019-07-08 00:00:00

pages

9833

issue

1

issn

2045-2322

pii

10.1038/s41598-019-46354-x

journal_volume

9

pub_type

杂志文章
  • A new primitive Neornithischian dinosaur from the Jurassic of Patagonia with gut contents.

    abstract::We describe a new species of an ornithischian dinosaur, Isaberrysaura mollensis gen. et sp. nov. The specimen, consisting in an almost complete skull and incomplete postcranium was collected from the marine-deltaic deposits of the Los Molles Formation (Toarcian-Bajocian), being the first reported dinosaur for this uni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42778

    authors: Salgado L,Canudo JI,Garrido AC,Moreno-Azanza M,Martínez LC,Coria RA,Gasca JM

    更新日期:2017-02-16 00:00:00

  • Endogenous antibodies for tumor detection.

    abstract::The study of cancer immunology has provided diagnostic and therapeutic instruments through serum autoantibody biomarkers and exogenous monoclonal antibodies. While some endogenous antibodies are found within or surrounding transformed tissue, the extent to which this exists has not been entirely characterized. We find...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05088

    authors: Rich BS,Honeyman JN,Darcy DG,Smith PT,Williams AR,Lim II,Johnson LK,Gönen M,Simon JS,LaQuaglia MP,Simon SM

    更新日期:2014-05-30 00:00:00

  • Automated Retinal Layer Segmentation Using Graph-based Algorithm Incorporating Deep-learning-derived Information.

    abstract::Regular drusen, an accumulation of material below the retinal pigment epithelium (RPE), have long been established as a hallmark early feature of nonneovascular age-related macular degeneration (AMD). Advances in imaging have expanded the phenotype of AMD to include another extracellular deposit, reticular pseudodruse...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66355-5

    authors: Mishra Z,Ganegoda A,Selicha J,Wang Z,Sadda SR,Hu Z

    更新日期:2020-06-12 00:00:00

  • Factors affecting dural sinus density in non-contrast computed tomography of brain.

    abstract::The possibility of changing the intracranial vasculature computed tomography (CT) attenuation under the influence of variable factors is a long-held unestablished belief. The purpose of this study is to evaluate factors affecting dural sinus density in non-contrast computed tomography of the brain. Patients presented ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48545-y

    authors: Akhavan R,Abbasi B,Kheirollahi M,Ghamari Khameneh A,Hashemi J,Khoei S,Darban Hosseini Amirkhiz G

    更新日期:2019-08-19 00:00:00

  • A Novel Recombinant Enterovirus Type EV-A89 with Low Epidemic Strength in Xinjiang, China.

    abstract::Enterovirus A89 (EV-A89) is a novel member of the EV-A species. To date, only one full-length genome sequence (the prototype strain) has been published. Here, we report the molecular identification and genomic characterization of a Chinese EV-A89 strain, KSYPH-TRMH22F/XJ/CHN/2011, isolated in 2011 from a contact of an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18558

    authors: Fan Q,Zhang Y,Hu L,Sun Q,Cui H,Yan D,Sikandaner H,Tang H,Wang D,Zhu Z,Zhu S,Xu W

    更新日期:2015-12-21 00:00:00

  • Flux balance analysis predicts essential genes in clear cell renal cell carcinoma metabolism.

    abstract::Flux balance analysis is the only modelling approach that is capable of producing genome-wide predictions of gene essentiality that may aid to unveil metabolic liabilities in cancer. Nevertheless, a systemic validation of gene essentiality predictions by flux balance analysis is currently missing. Here, we critically ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10738

    authors: Gatto F,Miess H,Schulze A,Nielsen J

    更新日期:2015-06-04 00:00:00

  • Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures.

    abstract::Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies hav...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-39716-y

    authors: Chen J,Liu H,Cai S,Zhang H

    更新日期:2019-03-05 00:00:00

  • Improvement of osteogenesis by a uniform PCL coating on a magnesium screw for biodegradable applications.

    abstract::A polymer coating as polycaprolactone (PCL) is applied to improve the initial corrosion resistance of biodegradable magnesium. In addition, plasma electrolytic oxidation (PEO) is performed to increase adhesion between the polymer and the metal. However, when a complex-shaped material such as a screw is implanted in a ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31359-9

    authors: Kim YK,Lee KB,Kim SY,Jang YS,Kim JH,Lee MH

    更新日期:2018-09-05 00:00:00

  • CXCL12 overexpression promotes the angiogenesis potential of periodontal ligament stem cells.

    abstract::Periodontal ligament stem cells (PDLSCs) are a major source of mesenchymal stem cells (MSCs) in adults and are effective for tissue engineering, like promoting angiogenesis and bone regeneration. CXCL12 has been reported to be involved in the recruitment and engraftment of MSCs in wound sites. However, whether CXCL12 ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10971-1

    authors: Zhang L,Zhou Y,Sun X,Zhou J,Yang P

    更新日期:2017-08-31 00:00:00

  • A Clinical Risk Prediction Tool for Peritonitis-Associated Treatment Failure in Peritoneal Dialysis Patients.

    abstract::A tool to predict peritonitis-associated treatment failure among peritoneal dialysis (PD) patients has not yet been established. We conducted a multicentre, retrospective cohort study among 1,025 PD patients between 2006 and 2016 in Thailand to develop and internally validate such a tool. Treatment failure was defined...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/s41598-018-33196-2

    authors: Nochaiwong S,Ruengorn C,Koyratkoson K,Thavorn K,Awiphan R,Chaisai C,Phatthanasobhon S,Noppakun K,Suteeka Y,Panyathong S,Dandecha P,Chongruksut W,Nanta S,Thai Renal Outcomes Research (THOR) Investigators.

    更新日期:2018-10-04 00:00:00

  • Ultraintense UV emission from ZnO-sheathed ZnS nanorods.

    abstract::Short-wavelength luminescence is essential for high-performance optoelectronic device applications. There have been efforts to obtain intense ultraviolet (UV) emission by encapsulating ZnO one-dimensional (1D) nanostructures with materials such as ZnS. However, the encapsulation of ZnS 1D nanostructures with ZnO has n...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13556-0

    authors: Lee JK,Sun GJ,Lee WS,Hyun SK,Kim KK,Choi SB,Lee C

    更新日期:2017-10-12 00:00:00

  • Comparative transcriptomic analysis of human and Drosophila extracellular vesicles.

    abstract::Extracellular vesicles (EVs) are membrane-enclosed nanoparticles containing specific repertoires of genetic material. In mammals, EVs can mediate the horizontal transfer of various cargos and signaling molecules, notably miRNA and mRNA species. Whether this form of intercellular communication prevails in other metazoa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27680

    authors: Lefebvre FA,Benoit Bouvrette LP,Perras L,Blanchet-Cohen A,Garnier D,Rak J,Lécuyer É

    更新日期:2016-06-10 00:00:00

  • Horizontal extent of the urban heat dome flow.

    abstract::Urban heat dome flow, which is also referred to as urban heat island circulation, is important for urban ventilation and pollutant transport between adjacent cities when the background wind is weak or absent. A "dome-shaped" profile can form at the upper boundary of the urban heat island circulation. The horizontal ex...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09917-4

    authors: Fan Y,Li Y,Bejan A,Wang Y,Yang X

    更新日期:2017-09-15 00:00:00

  • Neural Network for Nanoscience Scanning Electron Microscope Image Recognition.

    abstract::In this paper we applied transfer learning techniques for image recognition, automatic categorization, and labeling of nanoscience images obtained by scanning electron microscope (SEM). Roughly 20,000 SEM images were manually classified into 10 categories to form a labeled training set, which can be used as a referenc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13565-z

    authors: Modarres MH,Aversa R,Cozzini S,Ciancio R,Leto A,Brandino GP

    更新日期:2017-10-16 00:00:00

  • Annexin-A1 enhances breast cancer growth and migration by promoting alternative macrophage polarization in the tumour microenvironment.

    abstract::Macrophages are potent immune cells with well-established roles in the response to stress, injury, infection and inflammation. The classically activated macrophages (M1) are induced by lipopolysaccharide (LPS) and express a wide range of pro-inflammatory genes. M2 macrophages are induced by T helper type 2 cytokines s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17622-5

    authors: Moraes LA,Kar S,Foo SL,Gu T,Toh YQ,Ampomah PB,Sachaphibulkij K,Yap G,Zharkova O,Lukman HM,Fairhurst AM,Kumar AP,Lim LHK

    更新日期:2017-12-20 00:00:00

  • Immune interconnectivity of anatomically distant tumors as a potential mediator of systemic responses to local therapy.

    abstract::Complex interactions occur between tumor and host immune system at each site in the metastatic setting, the outcome of which can determine behavior ranging from dormancy to rapid growth. An additional layer of complexity arises from the understanding that cytotoxic T cells can traffic through the host circulatory syst...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27718-1

    authors: Walker R,Poleszczuk J,Pilon-Thomas S,Kim S,Anderson AARA,Czerniecki BJ,Harrison LB,Moros EG,Enderling H

    更新日期:2018-06-21 00:00:00

  • Quinone derivatives isolated from the endolichenic fungus Phialocephala fortinii are Mdr1 modulators that combat azole resistance in Candida albicans.

    abstract::One of the main azole-resistance mechanisms in Candida pathogens is the upregulation of drug efflux pumps, which compromises the efficacy of azoles and results in treatment failure. The combination of azole-antifungal agents with efflux pump inhibitors represents a promising strategy to combat fungal infection. High-t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33687

    authors: Xie F,Chang W,Zhang M,Li Y,Li W,Shi H,Zheng S,Lou H

    更新日期:2016-09-21 00:00:00

  • Somatic and visceral effects of word valence, arousal and concreteness in a continuum lexical space.

    abstract::Although affective and semantic word properties are known to independently influence our sensorimotor system, less is known about their interaction. We investigated this issue applying a data-driven mixed-effects regression approach, evaluating the impact of lexical-semantic properties on electrophysiological paramete...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56382-2

    authors: Vergallito A,Petilli MA,Cattaneo L,Marelli M

    更新日期:2019-12-27 00:00:00

  • Health risk assessment of rare earth elements in cereals from mining area in Shandong, China.

    abstract::To investigate the concentrations of rare earth elements in cereals and assess human health risk through cereal consumption, a total of 327 cereal samples were collected from rare earth mining area and control area in Shandong, China. The contents of 14 rare earth elements were determined by Inductively Coupled Plasma...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10256-7

    authors: Zhuang M,Wang L,Wu G,Wang K,Jiang X,Liu T,Xiao P,Yu L,Jiang Y,Song J,Zhang J,Zhou J,Zhao J,Chu Z

    更新日期:2017-08-29 00:00:00

  • Graphene Based Waveguide Polarizers: In-Depth Physical Analysis and Relevant Parameters.

    abstract::Optical polarizing devices exploiting graphene embedded in waveguides have been demonstrated in the literature recently and both the TE- and TM-pass behaviors were reported. The determination of the passing polarization is usually attributed to graphene's Fermi level (and, therefore, doping level), with, however, no d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16949

    authors: de Oliveira RE,de Matos CJ

    更新日期:2015-11-19 00:00:00

  • Roles of different types of oxalate surface complexes in dissolution process of ferrihydrite aggregates.

    abstract::The dissolution of ferrihydrite induced by low molar mass (LMM) organics is an important process that provides bioavailable iron for organisms. Here, ATR-FTIR analysis was combined with characterization of ferrihydrite nanoparticles and kinetic modeling to investigate the roles of different oxalate surface complex spe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20401-5

    authors: Li F,Koopal L,Tan W

    更新日期:2018-02-01 00:00:00

  • Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures.

    abstract::Majority of novel X-ray crystal structures of proteins are currently solved using the anomalous diffraction signal provided by selenium after incorporation of selenomethionine instead of natural methionine by genetic engineering methods. However, selenium can be inserted into protein crystals in the form of selenourea...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37123

    authors: Luo Z

    更新日期:2016-11-14 00:00:00

  • Geochemical Evidence for the Control of Fire by Middle Palaeolithic Hominins.

    abstract::The use of fire played an important role in the social and technological development of the genus Homo. Most archaeologists agree that this was a multi-stage process, beginning with the exploitation of natural fires and ending with the ability to create fire from scratch. Some have argued that in the Middle Palaeolith...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51433-0

    authors: Brittingham A,Hren MT,Hartman G,Wilkinson KN,Mallol C,Gasparyan B,Adler DS

    更新日期:2019-10-25 00:00:00

  • Crystalline structure, electronic and lattice-dynamics properties of NbTe2.

    abstract::Layered-structure materials are currently relevant given their quasi-2D nature. Knowledge of their physical properties is currently of major interest. Niobium ditelluride possesses a monoclinic layered-structure with a distortion in the tellurium planes. This structural complexity has hindered the determination of its...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35308-4

    authors: Barajas-Aguilar AH,Irwin JC,Garay-Tapia AM,Schwarz T,Paraguay Delgado F,Brodersen PM,Prinja R,Kherani N,Jiménez Sandoval SJ

    更新日期:2018-11-19 00:00:00

  • Association between plasma levels of homocysteine, folate, and vitamin B12, and dietary folate intake and hypertension in a cross-sectional study.

    abstract::There are few studies examining the association between homocysteine (Hcy) level and the risk of hypertension with consideration for folate and vitamin B12 as related to Hcy level. We simultaneously examined the associations of plasma levels of Hcy, folate, and vitamin B12, and dietary folate intake with the prevalenc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75267-3

    authors: Tamura T,Kuriyama N,Koyama T,Ozaki E,Matsui D,Kadomatsu Y,Tsukamoto M,Kubo Y,Okada R,Hishida A,Sasakabe T,Kawai S,Naito M,Takashima N,Kadota A,Tanaka K,Hara M,Suzuki S,Nakagawa-Senda H,Takezaki T,Shimoshikiryo I,

    更新日期:2020-10-28 00:00:00

  • Spectroscopic observation of oxygen dissociation on nitrogen-doped graphene.

    abstract::Carbon nanomaterials' reactivity towards oxygen is very poor, limiting their potential applications. However, nitrogen doping is an established way to introduce active sites that facilitate interaction with gases. This boosts the materials' reactivity for bio-/gas sensing and enhances their catalytic performance for t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08651-1

    authors: Scardamaglia M,Susi T,Struzzi C,Snyders R,Di Santo G,Petaccia L,Bittencourt C

    更新日期:2017-08-11 00:00:00

  • Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis.

    abstract::Ectoine synthase (EctC) is the signature enzyme for the production of ectoine, a compatible solute and chemical chaperone widely synthesized by bacteria as a cellular defense against the detrimental effects of osmotic stress. EctC catalyzes the last step in ectoine synthesis through cyclo-condensation of the EctA-form...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-36247-w

    authors: Czech L,Höppner A,Kobus S,Seubert A,Riclea R,Dickschat JS,Heider J,Smits SHJ,Bremer E

    更新日期:2019-01-23 00:00:00

  • Emerging MDR-Pseudomonas aeruginosa in fish commonly harbor oprL and toxA virulence genes and blaTEM, blaCTX-M, and tetA antibiotic-resistance genes.

    abstract::This study aimed to investigate the prevalence, antibiogram of Pseudomonas aeruginosa (P. aeruginosa), and the distribution of virulence genes (oprL, exoS, phzM, and toxA) and the antibiotic-resistance genes (blaTEM, tetA, and blaCTX-M). A total of 285 fish (165 Oreochromis niloticus and 120 Clarias gariepinus) were c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72264-4

    authors: Algammal AM,Mabrok M,Sivaramasamy E,Youssef FM,Atwa MH,El-Kholy AW,Hetta HF,Hozzein WN

    更新日期:2020-09-29 00:00:00

  • Viscosity measurement of Xanthan-Poly(vinyl alcohol) mixture and its effect on the mechanical properties of the hydrogel for 3D modeling.

    abstract::Biomodels made of poly(vinyl alcohol) (PVA) are demanded because they can represent the geometries and mechanical properties of human tissues realistically. Injecting and molding, commonly used in three-dimensional (3D) modeling, help to represent the blood vessels accurately. However, these techniques sometimes requi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34986-4

    authors: Shimizu Y,Tanabe T,Yoshida H,Kasuya M,Matsunaga T,Haga Y,Kurihara K,Ohta M

    更新日期:2018-11-08 00:00:00

  • Quantifying nucleoporin stoichiometry inside single nuclear pore complexes in vivo.

    abstract::The nuclear pore complex (NPC) is one of the largest supramolecular structures in eukaryotic cells. Its octagonal ring-scaffold perforates the nuclear envelope and features a unique molecular machinery that regulates nucleocytoplasmic transport. NPCs are composed of ~30 different nucleoporins (Nups), averaged at 8, 16...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09372

    authors: Mi L,Goryaynov A,Lindquist A,Rexach M,Yang W

    更新日期:2015-03-23 00:00:00