Development of multi-epitope driven subunit vaccine against Fasciola gigantica using immunoinformatics approach.

Abstract:

:Fascioliasis, a serious helminth disease of the livestock population, results from infection with the parasite Fasciola. Despite the alarming increase in drug resistance, a safe and fully effective vaccine for fascioliasis is still not available. In the present study, we employed high-throughput immunoinformatics approaches to design a multi-epitope based subunit vaccine using seven important F. gigantica proteins (cathepsin B, cathepsin L, leucyl aminopeptidase, thioredoxin glutathione reductase, fatty acid binding protein-1, saposin-like protein-2, and 14-3-3 protein epsilon). The CTL, HTL, and B-cell epitopes were selected for designing the vaccine on the basis of their immunogenic behavior and binding affinity. The engineered vaccine showed potential immunogenic efficacy by elaborating the IFN-γ and humoral response. The modeled structure of the vaccine was docked with the toll-like receptor-2 immune receptor, and the molecular dynamics simulation was performed to understand the stability, interaction, and dynamics of the complex. Finally, in silico cloning of the resulting vaccine was performed to create the plasmid construct of vaccine for expression in an appropriate biological system. Experimental evaluation of the designed vaccine construct in an animal model may result in a novel and immunogenic vaccine that may confer protection against F. gigantica infection.

journal_name

Int J Biol Macromol

authors

Kalita P,Lyngdoh DL,Padhi AK,Shukla H,Tripathi T

doi

10.1016/j.ijbiomac.2019.07.024

subject

Has Abstract

pub_date

2019-10-01 00:00:00

pages

224-233

eissn

0141-8130

issn

1879-0003

pii

S0141-8130(19)33505-6

journal_volume

138

pub_type

杂志文章
  • Extracellular polymerization of 3-hydroxyalkanoate monomers with the polymerase of Alcaligenes eutrophus.

    abstract::Previous investigations on the role of the polymerase in the synthesis of poly-3-hydroxybutyrate (PHB) are reviewed, and the results from earlier in vitro studies on the activity and selectivity of the polymerase of Alcaligenes eutrophus are discussed. In the present study the effect of glycerol on stabilizing the pol...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/s0141-8130(99)00015-x

    authors: Lenz RW,Farcet C,Dijkstra PJ,Goodwin S,Zhang S

    更新日期:1999-06-01 00:00:00

  • Cellulosic paper with high antioxidative and barrier properties obtained through incorporation of tannin into kraft pulp fibers.

    abstract::In this work, we prepared novel cellulosic paper by incorporating tannin into the kraft pulp for potential application in active food packaging. The kraft pulp fibers were firstly periodate oxidized to obtain the dialdehyde cellulosic fibers, and then reacted with varied dosages of tannin to incorporate them into the ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.06.101

    authors: Ji Y,Xu Q,Jin L,Fu Y

    更新日期:2020-11-01 00:00:00

  • Structure, stability and aggregation propensity of a Ribonuclease A-Onconase chimera.

    abstract::Structural roles of loop regions are frequently overlooked in proteins. Nevertheless, they may be key players in the definition of protein topology and in the self-assembly processes occurring through domain swapping. We here investigate the effects on structure and stability of replacing the loop connecting the last ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.04.164

    authors: Esposito L,Donnarumma F,Ruggiero A,Leone S,Vitagliano L,Picone D

    更新日期:2019-07-15 00:00:00

  • Effects of manganese (II) on Bacillus licheniformis ATCC 9945A physiology and gamma-poly(glutamic acid) formation.

    abstract::Bacillus licheniformis ATCC 9945A was cultivated in shake flasks using citrate (12 gl-1), glutamate (20 gl-1) and glycerol (80 gl-1) as carbon sources for cell growth and gamma-poly(glutamic acid) (gamma-PGA) production. The effect of the MnSO4 concentration in the medium over a range from 0.0 to 615 microns was studi...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/0141-8130(95)98153-p

    authors: Cromwick AM,Gross RA

    更新日期:1995-10-01 00:00:00

  • The antibacterial and anti-inflammatory investigation of Lawsonia Inermis-gelatin-starch nano-fibrous dressing in burn wound.

    abstract::The aim of this study was to develop a new bioactive gelatin-oxidized starch nanofibers containing Lawsonia Inermis (henna) for treating second-degree burn wounds. Continuous, smooth, and bead-free fibers were obtained when the gelatin-starch ratio was 70/30.Additionally, the fiber dimeter was reduced with increasing ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.10.061

    authors: Hadisi Z,Nourmohammadi J,Nassiri SM

    更新日期:2018-02-01 00:00:00

  • The oxidation of potato starch by Electro-Fenton system in the presence of Fe(II) ions.

    abstract::An efficient method was developed to prepare oxidized potato starch under the pasting point by Electro-Fenton system, in which a complex of sodium citrate and Fe2+ (SC-Fe2+) was used as catalyst, and H2O2 was used as oxidant. In the preparation process the oxidation degree of starch was controlled by the molar ratios ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.10.012

    authors: Dang X,Chen H,Shan Z,Zhen W,Yang M

    更新日期:2019-01-01 00:00:00

  • Exploring the interaction of anti-androgen drug-bicalutamide with human alpha-2-macroglobulin: A biophysical investigation.

    abstract::Bicalutamide (BCT), a drug used in the treatment of prostate cancer, antagonises the actions of androgens, at the receptor level, thereby inhibiting the growth of prostate tumours. Alpha-2-macroglobulin (α2M), a pan-proteinase inhibitor, inhibits proteinase, regardless of specificity and catalytic mechanism. α2M is de...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.08.117

    authors: Zia MK,Siddiqui T,Ali SS,Ahsan H,Khan FH

    更新日期:2018-12-01 00:00:00

  • Interaction of two fragments of cibacron blue F3GA having anthraquinone chromophores with basic polypeptides.

    abstract::The interaction of two anthraquinone dyes, bromaminic acid 1-amino-4-bromo anthraquinone-2-sulphonic acid (BA) and 1-amino-4-(4'-aminophenylamino)-anthraquinone-2,3'-disulphonic acid (ASSO), with poly-L-lysine (PLL), poly-L-ornithine (PLO) and poly-L-arginine (PLA) has been studied. The flexibility of the side chain (...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/s0141-8130(05)80028-5

    authors: Ratna MA,Atreyi M,Rao MV

    更新日期:1992-08-01 00:00:00

  • Novel insights into the treatment of SARS-CoV-2 infection: An overview of current clinical trials.

    abstract::The emergence of the global pandemic caused by the novel SARS-CoV-2 virus has motivated scientists to find a definitive treatment or a vaccine against it in the shortest possible time. Current efforts towards this goal remain fruitless without a full understanding of the behavior of the virus and its adaptor proteins....

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2020.09.204

    authors: Oroojalian F,Haghbin A,Baradaran B,Hemmat N,Shahbazi MA,Baghi HB,Mokhtarzadeh A,Hamblin MR

    更新日期:2020-12-15 00:00:00

  • Chemical modification of cellulosic biopolymer and its use in removal of heavy metal ions from wastewater.

    abstract::Use of biological macromolecules for wastewater remediation process has become the topic of intense research mostly driven by growing concerns about the depletion of petroleum oil reserves and environmental problems. So in view of technological significance of cellulosic biopolymers in various fields, the present stud...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2014.03.046

    authors: Singha AS,Guleria A

    更新日期:2014-06-01 00:00:00

  • Computational study of the conformational profiles of model bis-cystine cyclic peptides.

    abstract::Bis-cystine cyclic peptides are a new kind of molecules with potential use as cavitands, transporters or antagonists of target ligands. Studies aimed at establishing their conformational profiles may prove useful in understanding their characteristics and potentiate their use in molecular design. The present investiga...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/0141-8130(95)01083-1

    authors: Fernandez Y,Ricart JM,Perez JJ

    更新日期:1996-06-01 00:00:00

  • Conformational rearrangements of G-quadruplex topology promoted by Cu(II) 12-MCCu(II)PyrAcHA-4 metallacrown.

    abstract::Cu(II) 12-MCCu(II)PyrAcHA-4 metallacrown was studied by several spectroscopic techniques as an interacting ligand with G-quadruplex DNA structures. Investigations were performed on oligonucleotides bearing human telomeric and protooncogenic c-myc sequences in buffered solution mimicking ionic conditions in cellular en...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.11.163

    authors: Rajczak E,Juskowiak B

    更新日期:2020-08-01 00:00:00

  • Purification, characterization and antitumor activity of an exopolysaccharide produced by Bacillus velezensis SN-1.

    abstract::A capsular polysaccharides (CPS) producer Bacillus velezensis SN-1 (B. velezensis SN-1) was isolated in Da-jiang, China. We used ultrasonic extraction to obtain CPS from a culture of B. velezensis SN-1 at a yield of 755 mg/L. Using gel permeation chromatography (GPC), CPS was separated into a single peak with a molecu...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.04.024

    authors: Cao C,Li Y,Wang C,Zhang N,Zhu X,Wu R,Wu J

    更新日期:2020-08-01 00:00:00

  • Green synthesis of biopolymer-silver nanoparticle nanocomposite: an optical sensor for ammonia detection.

    abstract::Biopolymer used for the production of nanoparticles (NPs) has attracted increasing attention. In the presence article we use aqueous solution of polysaccharide Cyamopsis tetragonaloba commonly known as guar gum (GG), from plants. GG acts as reductive preparation of silver nanoparticles which are found to be <10 nm in ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2012.06.033

    authors: Pandey S,Goswami GK,Nanda KK

    更新日期:2012-11-01 00:00:00

  • Physical, structural and thermal properties of composite edible films prepared from pearl millet starch and carrageenan gum: Process optimization using response surface methodology.

    abstract::The present study aimed at developing edible composite films from pearl millet starch (PMS) and carrageenan gum (CG) blends. Central composite rotatable design of response surface methodology was used to optimize concentrations of PMS (2-5%), carrageenan (1-3.5%) and glycerol (15-35%) for the development of composite ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.09.111

    authors: Sandhu KS,Sharma L,Kaur M,Kaur R

    更新日期:2020-01-15 00:00:00

  • Using Fe3O4-coated nanofibers based on cellulose acetate/chitosan for adsorption of Cr(VI), Ni(II) and phenol from aqueous solutions.

    abstract::This work aims at investigating Fe3O4-coated nanofibers based on cellulose acetate (CA) and chitosan (CS) for adsorption of Cr(VI), Ni(II), and phenol from aqueous solutions. The synthesized Fe3O4 nanoparticles (NPs), and the modified nanofibrous adsorbents are characterized by using FTIR and FE-SEM analyses. The opti...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.11.058

    authors: Karamipour A,Khadiv Parsi P,Zahedi P,Moosavian SMA

    更新日期:2020-07-01 00:00:00

  • Two-step purification procedure for recombinant human asialoerythropoietin expressed in transgenic plants.

    abstract::Asialoerythropoietin (asialo-EPO) is a desialylated form of human glycoprotein hormone erythropoietin (EPO), which has been reported to be neuro-, cardio-, and renoprotective in animal models of organ injuries. Since the current method of production of asialo-EPO from mammalian cell-made recombinant human EPO (rhuEPO(...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2014.10.033

    authors: Kittur FS,Arthur E,Nguyen M,Hung CY,Sane DC,Xie J

    更新日期:2015-01-01 00:00:00

  • Enhancement of lignin removal from pre-hydrolysis liquor for saccharide recovery via horseradish peroxidase treatment in the presence of Ca2.

    abstract::The removal of lignin is important to the recovery of saccharides from the pre-hydrolysis liquor (PHL) in kraft-based dissolved pulp production. A one-step process for lignin removal from PHL via treatment with horseradish peroxidase (HRP) in the presence of Ca2+ was proposed, and its principle was studied. The result...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.09.088

    authors: Wang F,Liu Q,Chen J,Li Z,Fu Y,Qin M

    更新日期:2020-11-15 00:00:00

  • The first mitochondrial genome for Phaudidae (Lepidoptera) with phylogenetic analyses of Zygaenoidea.

    abstract::Phauda flammans Walker belongs to Phaudidae (Lepidoptera), which is a holometabolous and leaf-eating pest that harms trees. So far, there is no mitochondrial (mt) genome reported of Phaudidae. Herein, we sequenced and annotated the complete mt genome of P. flammans representing the first mt genome of Phaudidae and pre...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.01.307

    authors: Zhang R,Li J,Geng S,Yang J,Zhang X,An Y,Li C,Cui H,Li X,Wang Y

    更新日期:2020-04-15 00:00:00

  • Structural features and thermal property of propionylated starches with different amylose/amylopectin ratio.

    abstract::This work concerned the effects of amylose/amylopectin ratio on the structure and thermal stability of propionylated starches with high degree of substitution (DS). Four starches with different amylose content were used to obtain propionylated starches. Acylation partly disrupted granule morphology of native starches,...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.01.033

    authors: Zhu J,Zhang S,Zhang B,Qiao D,Pu H,Liu S,Li L

    更新日期:2017-04-01 00:00:00

  • Chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide-stimulated RAW264.7 macrophage.

    abstract::This study was designed to study the chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide (LPS)-stimulated RAW264.7 macrophage. A new elution (0.3% NaCl aqueous solution) of Cyclocarya paliurus polysaccharide (CPP-3) was characterized by different methods such as fo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.10.055

    authors: Xiong L,Ouyang KH,Jiang Y,Yang ZW,Hu WB,Chen H,Wang N,Liu X,Wang WJ

    更新日期:2018-02-01 00:00:00

  • Elongation pattern and fine structure of the sheaths formed by Thiothrix nivea and Thiothrix fructosivorans.

    abstract::Thiothrix strains are filamentous sulfur-oxidizing bacteria common in activated sludge. Some of the members, including Thiothrix nivea and T. fructosivorans, are known to form a microtubular sheath that covers a line of cells. The sheaths are assemblages of [→4)-β-d-GlcN-(1→4)-β-d-Glc-(1→]n modified with unusual deoxy...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.11.025

    authors: Kawasaki Y,Endo T,Fujiwara A,Kondo K,Katahira M,Nittami T,Sato M,Takeda M

    更新日期:2017-02-01 00:00:00

  • Preparation of ecofriendly UV-protective food packaging material by starch/TiO2 bio-nanocomposite: Characterization.

    abstract::In this study, ecofriendly starch/TiO2 bio-nanocomposites were produced using with different nano-TiO2 (TiO2) content (1, 3, and 5 (wt%)). Physical, mechanical, thermal, water-vapor permeability (WVP) properties and UV transmittance were investigated. Our results showed that the increasing TiO2 content increased the h...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.11.065

    authors: Goudarzi V,Shahabi-Ghahfarrokhi I,Babaei-Ghazvini A

    更新日期:2017-02-01 00:00:00

  • Functional expression, monodispersity and conformational changes in the SBMV virus viral VPg on binding TFE.

    abstract::Southern bean mosaic virus (SBMV) RNA purified from infected plants was used for cloning the viral genome-linked protein (VPg) and was subsequently expressed in Escherichia coli. Circular dichroism (CD), dynamic light scattering (DLS) and saturation transfer difference (STD) by nuclear magnetic resonance (NMR) measure...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.11.026

    authors: Mariutti RB,Caruso IP,Ullah A,De Morais FR,Rehders D,Arni RK

    更新日期:2016-02-01 00:00:00

  • Chitosan and carboxymethyl cellulose based magnetic nanocomposites for application of peroxidase purification.

    abstract::Recently, protein purification methods have a very wide area of research. Many of these methods are both expensive and multi-stage methods, that are needed in specific equipment. In this study, biopolymer coated magnetic nanoparticles, carboxymethyl cellulose (CMC) and chitosan (CH) coated Fe3O4 (magnetite) nanocompos...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.12.042

    authors: Zengin Kurt B,Uckaya F,Durmus Z

    更新日期:2017-03-01 00:00:00

  • The interaction between residues 62 and 193 play a key role in activity and structural stability of arginine kinase.

    abstract::The purpose of this study is to clarify that the amino acid residues (Asp62 and Arg193) are responsible for the activity and stability of arginine kinase (AK). The amino acid residues Asp62 (D62) and Arg193 (R193) are strictly conserved in monomeric AKs and form an ion pair in the transition state analogue complex. In...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2011.05.022

    authors: Liu N,Wang JS,Wang WD,Pan JC

    更新日期:2011-10-01 00:00:00

  • Biologically active polysaccharide from edible mushrooms: A review.

    abstract::Mushrooms are renewable natural gift for humankind, furnished with unique taste, flavor and medicinal properties. For the last few decades study of mushroom polysaccharides has become a matter of great interest to the researchers for their immunomodulating, antimicrobial, antioxidant, anticancer, and antitumor propert...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2021.01.081

    authors: Maity P,Sen IK,Chakraborty I,Mondal S,Bar H,Bhanja SK,Mandal S,Maity GN

    更新日期:2021-01-16 00:00:00

  • Sustainable supercapacitors of nitrogen-doping porous carbon based on cellulose nanocrystals and urea.

    abstract::The development of porous carbon materials from sustainable natural sources is an attractive topic in the field of energy storage materials. This study proposed the production of nitrogen-doped porous carbon (NPC) materials from the renewable cellulose nanocrystal (CNC) as carbon source and water-soluble urea as nitro...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.09.011

    authors: Wang S,Dong L,Li Z,Lin N,Xu H,Gao S

    更新日期:2020-12-01 00:00:00

  • The role of Cys271 in conformational changes of arginine kinase.

    abstract::Arginine kinase (AK), a crucial enzyme in energy metabolism, buffers cellular ATP levels by catalyzing the reversible phosphoryl transfer between ATP and arginine. To better understand the role of Cys271 in conformational changes of AK from greasyback shrimp (Metapenaeus ensis), we replaced the residue with serine and...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2011.04.002

    authors: Liu N,Wang JS,Wang WD,Pan JC

    更新日期:2011-07-01 00:00:00

  • Box-Behnken design to optimize the synthesis of new crosslinked chitosan-glyoxal/TiO2 nanocomposite: Methyl orange adsorption and mechanism studies.

    abstract::A crosslinked chitosan-glyoxal/TiO2 nanocomposite (CCG/TNC) was synthesized by loading different ratios of TiO2 nanoparticles into polymeric matrix of crosslinked chitosan-glyoxal (CCG) to be a promising biosorbent for methyl orange (MO). Box-Behnken design (BBD) in response surface methodology (RSM) was applied to op...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.02.025

    authors: Mohammad AT,Abdulhameed AS,Jawad AH

    更新日期:2019-05-15 00:00:00