Croceibacterium gen. nov., with description of Croceibacterium ferulae sp. nov., an endophytic bacterium isolated from Ferula sinkiangensis K. M. Shen and reclassification of Porphyrobacter mercurialis as Croceibacterium mercuriale comb. nov.

Abstract:

:A novel endophytic bacterium, designated strain SX2RGS8T, was isolated from the surface-sterilized roots of an endangered medicinal plant (Ferula sinkiangensis K. M. Shen) collected from Xinjiang, north-western PR China. The taxonomic position of the candidate was investigated using a polyphasic approach. Strain SX2RGS8T was found to be aerobic, Gram-stain-negative, oxidase-negative, catalase-positive and axiolitic-shaped. Strain SX2RGS8T grew at 4-45 °C (optimum, 28 °C), pH 4.0-10.0 (pH 7.0) and in the presence of 0-5 % (w/v) NaCl. The polar lipids detected for strain SX2RGS8T were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, unidentified phosphoglycolipids, an unidentified phospholipid and unidentified lipids. The major respiratory quinone of strain SX2RGS8T was ubiquinone 10 and the major fatty acid was summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The DNA G+C content was determined to be 66.5 mol%. Phylogenetic analyses based on 16S rRNA gene sequences indicated that the isolate belonged to the family Erythrobacteraceae and showed 99.2 % (Porphyrobacter mercurialis), 95.5 % (Porphyrobacter donghaensisi) and 95.4 % (Porphyrobacter colymbi) similarities to its closest relatives. The isolate contained carotenoids, but no bacteriochlorophyll a. On the basis of phenotypic, genotypic and phylogenetic data, strain SX2RGS8T represents a novel species of a novel genus in the family Erythrobacteraceae, for which the name Croceibacterium ferulae gen. nov., sp. nov. is proposed. The type strain is SX2RGS8T (=CGMCC 1.16402T=KCTC 62090T). In addition, Porphyrobacter mercurialis Coil et al. 2016 is proposed to be transferred to this new genus as Croceibacterium mercuriale comb. nov.

authors

Liu YH,Fang BZ,Dong ZY,Li L,Mohamad OAA,Zhang YG,Egamberdieva D,Xiao M,Li WJ

doi

10.1099/ijsem.0.003540

subject

Has Abstract

pub_date

2019-08-01 00:00:00

pages

2547-2554

issue

8

eissn

1466-5026

issn

1466-5034

journal_volume

69

pub_type

杂志文章
  • Allochromatium phaeobacterium sp. nov.

    abstract::A rod-shaped, phototrophic, purple sulfur bacterium was isolated in pure culture from brackish water near Bheemli, Visakhapatnam, India, in a medium that contained 2 % NaCl (w/v). Strain JA144(T) was Gram-negative and motile. It did not require salt, but tolerated up to 3 % NaCl (w/v). Intracellular photosynthetic mem...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65647-0

    authors: Srinivas TN,Anil Kumar P,Sucharitha K,Sasikala Ch,Ramana ChV

    更新日期:2009-04-01 00:00:00

  • Cohaesibacter gelatinilyticus gen. nov., sp. nov., a marine bacterium that forms a distinct branch in the order Rhizobiales, and proposal of Cohaesibacteraceae fam. nov.

    abstract::Two novel Gram-negative bacterial strains, designated CL-GR15(T) and CL-GR35, were isolated from coastal seawater of the east coast of Korea. Identical 16S rRNA gene sequences were found in the two strains, and it was found that the strains represented a distinct and deep evolutionary lineage of descent in the order R...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65016-0

    authors: Hwang CY,Cho BC

    更新日期:2008-01-01 00:00:00

  • Polyphasic characterization of rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia).

    abstract::Fifty-eight new isolates were obtained from root nodules of common bean (Phaseolus vulgaris) cultivated in soils originating from different agroecological areas in Senegal and Gambia (West Africa). A polyphasic approach including both phenotypic and genotypic techniques was used to study the diversity of the 58 Rhizob...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-1-159

    authors: Diouf A,de Lajudie P,Neyra M,Kersters K,Gillis M,Martinez-Romero E,Gueye M

    更新日期:2000-01-01 00:00:00

  • Roseomonas rhizosphaerae sp. nov., a triazophos-degrading bacterium isolated from soil.

    abstract::A novel aerobic, non-spore-forming, non-motile, catalase- and oxidase-positive, Gram-stain-negative, coccoid to short-rod-shaped bacterial strain, designated YW11(T), was isolated from soil under long-term application of triazophos. The strain was able to hydrolyse triazophos. Strain YW11(T) grew at 15-40 °C (optimum ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.057000-0

    authors: Chen Q,Sun LN,Zhang XX,He J,Kwon SW,Zhang J,Li SP,Gu JG

    更新日期:2014-04-01 00:00:00

  • Ulvibacter antarcticus sp. nov., isolated from Antarctic coastal seawater.

    abstract::A seawater bacterium, designated IMCC3101(T), was isolated from Antarctic coastal seawater. The strain was Gram-negative, chemoheterotrophic, obligately aerobic, pigmented dark yellow (flexirubin-type pigments) and devoid of gliding and flagellar motility. On the basis of 16S rRNA gene sequence comparisons, the most c...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65265-0

    authors: Choi TH,Lee HK,Lee K,Cho JC

    更新日期:2007-12-01 00:00:00

  • Reclassification of [Glaciecola] lipolytica and [Aestuariibacter] litoralis in Aliiglaciecola gen. nov., as Aliiglaciecola lipolytica comb. nov. and Aliiglaciecola litoralis comb. nov., respectively.

    abstract::Following phylogenetic analysis based on 16S rRNA gene sequences, together with DNA G+C contents and differential chemotaxonomic and physiological characteristics, a new genus with the name Aliiglaciecola gen. nov. is proposed to more appropriately accommodate two recognized species of the genera Glaciecola and Aestua...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.045625-0

    authors: Jean WD,Hsu CY,Huang SP,Chen JS,Lin S,Su MH,Shieh WY

    更新日期:2013-08-01 00:00:00

  • Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces.

    abstract::Strains HM2-1 and HM2-2(T) were isolated from the faeces of a healthy infant and were characterized by determining their phenotypic and biochemical features and phylogenetic positions based on partial 16S rRNA gene sequence analysis. They were Gram-positive, obligately anaerobic, non-spore-forming, non-gas-producing, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024521-0

    authors: Morita H,Nakano A,Onoda H,Toh H,Oshima K,Takami H,Murakami M,Fukuda S,Takizawa T,Kuwahara T,Ohno H,Tanabe S,Hattori M

    更新日期:2011-11-01 00:00:00

  • Falsibacillus albus sp. nov., isolated from mangrove soil.

    abstract::A novel Gram-stain-positive, catalase- and oxidase-positive, endospore-forming bacterium, designated GY 10110T, was isolated from mangrove soil collected from Qinzhou, Guangxi province, China. Cells were aerobic, motile with peritrichous flagella and rod-shaped. The strain grew at 15-37 °C (optimum, 28 °C), at 0-3 %(w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003328

    authors: Shi SB,Liu C,Jiang MG,Li GD,Yang LF,Wu JF,Jiang LQ,Zhang K,Shen NK,Jiang CL,Jiang Y

    更新日期:2019-05-01 00:00:00

  • Phylogeny and differentiation of species of the genus Gluconacetobacter and related taxa based on multilocus sequence analyses of housekeeping genes and reclassification of Acetobacter xylinus subsp. sucrofermentans as Gluconacetobacter sucrofermentans (T

    abstract::Three housekeeping genes (dnaK, groEL and rpoB) of strains belonging to the genus Gluconacetobacter (37 strains) or related taxa (38 strains) were sequenced. Reference strains of the 15 species of the genus Gluconacetobacter were included. Phylogenetic trees generated using these gene sequences confirmed the existence...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.018465-0

    authors: Cleenwerck I,De Vos P,De Vuyst L

    更新日期:2010-10-01 00:00:00

  • Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.

    abstract::A novel actinomycete, designated strain NEAU-Ht49T, was isolated from sea sand sampled in Sanya and characterized by using a polyphasic approach. The 16S rRNA gene sequence analysis showed that strain NEAU-Ht49T was most closely related to Actinomadura rhizosphaerae SDA37T (98.8 %), Actinomadura logoneensis NEAU-G17T ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003819

    authors: Hu J,Han C,Yu B,Zhao J,Guo X,Shen Y,Wang X,Xiang W

    更新日期:2020-02-01 00:00:00

  • Roseomonas bella sp. nov., isolated from lake sediment.

    abstract::A Gram-stain-negative, non-motile, coccus-shaped, catalase- and oxidase-positive, facultatively anaerobic and pink-pigmented bacterium, designated strain CQN31T, was isolated from sediment of Changqiaohai Lake, Yunnan Province, China. Growth occurred at 4-45 °C (optimum, 37 °C), at pH 6.5-9.5 (optimum, pH 8.0) and wit...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004436

    authors: Zhang JY,Jiang XB,Zhu D,Wang XM,Du ZJ,Mu DS

    更新日期:2020-10-01 00:00:00

  • Pseudogulbenkiania gefcensis sp. nov., isolated from soil.

    abstract::A novel strain, yH16, was isolated on nutrient agar from soil samples collected at KyungHee University, Suwon City, Republic of Korea. Cells of strain yH16(T) were short rods, Gram-negative-staining, motile and non-spore-forming, with a polar flagellum. Biochemical and molecular characterization revealed that this str...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.040873-0

    authors: Lee DG,Im DM,Kang H,Yun P,Park SK,Hyun SS,Hwang DY

    更新日期:2013-01-01 00:00:00

  • Colwellia sediminilitoris sp. nov., isolated from a tidal flat.

    abstract::A Gram-stain-negative, aerobic, motile and rod-shaped or ovoid bacterial strain, designated YSM-23T, was isolated from a tidal flat on the South Sea in South Korea, and subjected to a polyphasic taxonomic study. Strain YSM-23T grew optimally at 30 °C, at pH 7.0-8.0 and in the presence of 1.0-2.0 % (w/v) NaCl. The phyl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001183

    authors: Park S,Jung YT,Yoon JH

    更新日期:2016-09-01 00:00:00

  • Dactylosporangium tropicum sp. nov., isolated from soil.

    abstract::Two novel actinomycete strains, designated KB2-4(T) and KB9-2, were isolated from soil samples. Both isolates formed finger-shaped sporangia on short sporangiophores that emerged directly from substrate hyphae. The cell-wall peptidoglycan contained glutamic acid, glycine, alanine and meso-diaminopimelic acid; the whol...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.028829-0

    authors: Thawai C,Tanasupawat S,Kudo T

    更新日期:2011-10-01 00:00:00

  • Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae.

    abstract::Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088T and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family Comamonadaceae, sh...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003167

    authors: Ding YP,Khan IU,Li MM,Xian WD,Liu L,Zhou EM,Salam N,Li WJ

    更新日期:2019-02-01 00:00:00

  • Streptomyces xinghaiensis sp. nov., isolated from marine sediment.

    abstract::A novel actinomycete, strain S187(T), was isolated from a marine sediment sample collected from Xinghai Bay, Dalian, China. Growth occurred on ISP medium 2 containing 0-9 % NaCl and at pH 6.0-9.0 and 10-45 degrees C. The cell wall of strain S187(T) contained the isomer ll-diaminopimelic acid as the diagnostic diamino ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.009878-0

    authors: Zhao XQ,Li WJ,Jiao WC,Li Y,Yuan WJ,Zhang YQ,Klenk HP,Suh JW,Bai FW

    更新日期:2009-11-01 00:00:00

  • Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity.

    abstract::Eleven strains of anaerobic Gram-negative bacilli isolated from the human oral cavity were subjected to a comprehensive range of phenotypic and genotypic tests and were found to comprise two homogeneous groups, designated E2 and E4. 16S rRNA gene sequence analysis revealed that members of both groups belonged to the g...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63634-0

    authors: Downes J,Sutcliffe I,Tanner ACR,Wade WG

    更新日期:2005-07-01 00:00:00

  • Microbulbifer halophilus sp. nov., a moderately halophilic bacterium from north-west China.

    abstract::A Gram-negative, rod-shaped, moderately halophilic bacterium, designated strain YIM 91118(T), motile with a single polar flagellum, was isolated from Xinjiang province in north-west China and subjected to a polyphasic taxonomic study. Strain YIM 91118(T) grew optimally at 37 degrees C, pH 7.0-8.0 and 10% NaCl (w/v). I...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65519-0

    authors: Tang SK,Wang Y,Cai M,Lou K,Mao PH,Jin X,Jiang CL,Xu LH,Li WJ

    更新日期:2008-09-01 00:00:00

  • Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard.

    abstract::The microflora isolated from food-packaging board is dominated by paenibacilli; a number of these micro-organisms have been characterized using a polyphasic approach. The highest 16S rRNA gene similarity was found between these isolates and Paenibacillus azotofixans ATCC 35681(T) (97.7 %). The main fatty acid of the p...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02277-0

    authors: Suominen I,Spröer C,Kämpfer P,Rainey FA,Lounatmaa K,Salkinoja-Salonen M

    更新日期:2003-09-01 00:00:00

  • Streptosporangium jomthongense sp. nov., an actinomycete isolated from rhizospheric soil and emendation of the genus Streptosporangium.

    abstract::A novel actinomycete, strain 30EHS(T), was isolated from the rhizospheric soil under an elephant ear plant (Caladium bicolor) in Jomthong district, Bangkok, Thailand. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 30EHS(T) fell within the cluster of the genus Streptosporangium. Chemical co...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.061978-0

    authors: Intra B,Matsumoto A,Inahashi Y,Ōmura S,Panbangred W,Takahashi Y

    更新日期:2014-07-01 00:00:00

  • Altererythrobacter flavus sp. nov., isolated from mangrove sediment.

    abstract::A Gram-negative, aerobic, non-motile, rod-shaped bacterium, designated MS1-4T, was isolated from mangrove sediment of the Jiulong River Estuary, Fujian Province, China. The isolate formed yellow colonies on ZB 2216E agar. Optimal growth was observed at pH 6.0, at 34 °C and in the presence of 4 % (w/v) NaCl. Strain MS1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002822

    authors: Ma H,Ren H,Huang L,Luo Y

    更新日期:2018-07-01 00:00:00

  • Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough.

    abstract::A novel thermophilic and sulfur-reducing heterotrophic bacterium, strain TFS10-5(T), was isolated from a deep-sea hydrothermal field in Yonaguni Knoll IV, Southern Okinawa Trough. Cells of strain TFS10-5(T) were motile rods, 1.5-5 microm in length and 0.5-0.8 microm in width. Strain TFS10-5(T) was an obligately anaero...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64640-0

    authors: Nunoura T,Oida H,Miyazaki M,Suzuki Y,Takai K,Horikoshi K

    更新日期:2007-03-01 00:00:00

  • Myroides xuanwuensis sp. nov., a mineral-weathering bacterium isolated from forest soil.

    abstract::A Gram-reaction-negative, aerobic, non-motile, yellow-pigmented, rod-shaped bacterium, designated strain TH-19(T), was isolated from a forest soil sample in Jiangsu province, China. On the basis of 16S rRNA gene sequence similarity, strain TH-19(T) was shown to belong to the genus Myroides, a member of the phylum Bact...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.056739-0

    authors: Zhang ZD,He LY,Huang Z,Sheng XF

    更新日期:2014-02-01 00:00:00

  • Dickeya undicola sp. nov., a novel species for pectinolytic isolates from surface waters in Europe and Asia.

    abstract::Strains 2B12T, FVG1-MFV-O17 and FVG10-MFV-A16 were isolated from fresh water samples collected in Asia and Europe. The nucleotide sequences of the gapA barcodes revealed that all three strains belonged to the same cluster within the genus Dickeya. Using 13 housekeeping genes (fusA, rpoD, rpoS, glyA, purA, groEL, gapA,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003497

    authors: Oulghazi S,Pédron J,Cigna J,Lau YY,Moumni M,Van Gijsegem F,Chan KG,Faure D

    更新日期:2019-08-01 00:00:00

  • Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina.

    abstract::A group of five Gram-negative, aerobic, halotolerant, non-pigmented bacteria isolated from shallow sediment samples and invertebrate specimens collected from the Gulf of Alaska and the Sea of Japan was subjected to taxonomic study. On the basis of 16S rRNA gene sequence analysis, the novel isolates were affiliated to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.036863-0

    authors: Romanenko LA,Tanaka N,Svetashev VI,Falsen E

    更新日期:2013-01-01 00:00:00

  • Pseudopedobacter beijingensis gen. nov., sp. nov., isolated from coking wastewater activated sludge, and reclassification of Pedobacter saltans as Pseudopedobacter saltans comb. nov.

    abstract::A taxonomic study was carried out on strain GCS-AE-31(T), which was isolated from a phenol-degrading consortium, enriched from coking wastewater activated sludge of the Beijing Shougang Company Limited during the screening of phenol-degrading bacteria. Cells of strain GCS-AE-31(T) were Gram-stain-negative, short rods,...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.053991-0

    authors: Cao J,Lai Q,Li G,Shao Z

    更新日期:2014-06-01 00:00:00

  • Proposal of Vespertiliibacter pulmonis gen. nov., sp. nov. and two genomospecies as new members of the family Pasteurellaceae isolated from European bats.

    abstract::Five bacterial strains isolated from bats of the family Vespertilionidae were characterized by phenotypic tests and multilocus sequence analysis (MLSA) using the 16S rRNA gene and four housekeeping genes (rpoA, rpoB, infB, recN). Phylogenetic analyses of individual and combined datasets indicated that the five strains...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.062786-0

    authors: Mühldorfer K,Speck S,Wibbelt G

    更新日期:2014-07-01 00:00:00

  • Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China.

    abstract::A halophilic actinomycete strain, designated YIM 90500(T), was isolated from a saline lake in Xinjiang province, north-west China and subjected to a polyphasic taxonomic study. Good growth of the novel isolate occurred at 28-37 degrees C, pH 7-8 and with 10-15 % (w/v) NaCl; no growth occurred without any salts. Strain...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65705-0

    authors: Tang SK,Wang Y,Cai M,Zhi XY,Lou K,Xu LH,Jiang CL,Li WJ

    更新日期:2009-03-01 00:00:00

  • Kazachstania siamensis sp. nov., an ascomycetous yeast species from forest soil in Thailand.

    abstract::Two strains (S-34T and S-35) of a novel ascomycetous yeast species belonging to the genus Kazachstania were isolated from soil from a mixed deciduous forest in Amphoe Wang Nam Khiao, Nakhon Ratchasima Province, Thailand. The D1/D2 domains of the large-subunit rDNA sequences of the two strains were identical and also i...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64539-0

    authors: Limtong S,Yongmanitchai W,Tun MM,Kawasaki H,Seki T

    更新日期:2007-02-01 00:00:00

  • Janibacter indicus sp. nov., isolated from hydrothermal sediment of the Indian Ocean.

    abstract::A Gram-staining-positive, aerobic and non-motile strain, 0704P10-1(T), was isolated from hydrothermal sediment of the Indian Ocean. Phylogenetic, phenotypic and chemotaxonomic data for the organism supported that it belonged to the genus Janibacter. Strain 0704P10-1(T) showed 97.2-98.7% 16S rRNA gene sequence similari...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.059527-0

    authors: Zhang G,Ren H,Wang S,Chen X,Yang Y,Zhang Y,Jiang Y

    更新日期:2014-07-01 00:00:00