APC/CCDH1 synchronizes ribose-5-phosphate levels and DNA synthesis to cell cycle progression.

Abstract:

:Accumulation of nucleotide building blocks prior to and during S phase facilitates DNA duplication. Herein, we find that the anaphase-promoting complex/cyclosome (APC/C) synchronizes ribose-5-phosphate levels and DNA synthesis during the cell cycle. In late G1 and S phases, transketolase-like 1 (TKTL1) is overexpressed and forms stable TKTL1-transketolase heterodimers that accumulate ribose-5-phosphate. This accumulation occurs by asymmetric production of ribose-5-phosphate from the non-oxidative pentose phosphate pathway and prevention of ribose-5-phosphate removal by depleting transketolase homodimers. In the G2 and M phases after DNA synthesis, expression of the APC/C adaptor CDH1 allows APC/CCDH1 to degrade D-box-containing TKTL1, abrogating ribose-5-phosphate accumulation by TKTL1. TKTL1-overexpressing cancer cells exhibit elevated ribose-5-phosphate levels. The low CDH1 or high TKTL1-induced accumulation of ribose-5-phosphate facilitates nucleotide and DNA synthesis as well as cell cycle progression in a ribose-5-phosphate-saturable manner. Here we reveal that the cell cycle control machinery regulates DNA synthesis by mediating ribose-5-phosphate sufficiency.

journal_name

Nat Commun

journal_title

Nature communications

authors

Li Y,Yao CF,Xu FJ,Qu YY,Li JT,Lin Y,Cao ZL,Lin PC,Xu W,Zhao SM,Zhao JY

doi

10.1038/s41467-019-10375-x

subject

Has Abstract

pub_date

2019-06-07 00:00:00

pages

2502

issue

1

issn

2041-1723

pii

10.1038/s41467-019-10375-x

journal_volume

10

pub_type

杂志文章
  • Degradation of complex arabinoxylans by human colonic Bacteroidetes.

    abstract::Some Bacteroidetes and other human colonic bacteria can degrade arabinoxylans, common polysaccharides found in dietary fiber. Previous work has identified gene clusters (polysaccharide-utilization loci, PULs) for degradation of simple arabinoxylans. However, the degradation of complex arabinoxylans (containing side ch...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20737-5

    authors: Pereira GV,Abdel-Hamid AM,Dutta S,D'Alessandro-Gabazza CN,Wefers D,Farris JA,Bajaj S,Wawrzak Z,Atomi H,Mackie RI,Gabazza EC,Shukla D,Koropatkin NM,Cann I

    更新日期:2021-01-19 00:00:00

  • Tunable ferroelectricity in artificial tri-layer superlattices comprised of non-ferroic components.

    abstract::Heterostructured material systems devoid of ferroic components are presumed not to display ordering associated with ferroelectricity. In heterostructures composed of transition metal oxides, however, the disruption introduced by an interface can affect the balance of the competing interactions among electronic spins, ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2061

    authors: Rogdakis K,Seo JW,Viskadourakis Z,Wang Y,Qune LF,Choi E,Burton JD,Tsymbal EY,Lee J,Panagopoulos C

    更新日期:2012-01-01 00:00:00

  • Rapid visualization of grain boundaries in monolayer MoS2 by multiphoton microscopy.

    abstract::Grain boundaries have a major effect on the physical properties of two-dimensional layered materials. Therefore, it is important to develop simple, fast and sensitive characterization methods to visualize grain boundaries. Conventional Raman and photoluminescence methods have been used for detecting grain boundaries; ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15714

    authors: Karvonen L,Säynätjoki A,Huttunen MJ,Autere A,Amirsolaimani B,Li S,Norwood RA,Peyghambarian N,Lipsanen H,Eda G,Kieu K,Sun Z

    更新日期:2017-06-05 00:00:00

  • Leucine-rich repeat receptor-like gene screen reveals that Nicotiana RXEG1 regulates glycoside hydrolase 12 MAMP detection.

    abstract::Activation of innate immunity by membrane-localized receptors is conserved across eukaryotes. Plant genomes contain hundreds of such receptor-like genes and those encoding proteins with an extracellular leucine-rich repeat (LRR) domain represent the largest family. Here, we develop a high-throughput approach to study ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03010-8

    authors: Wang Y,Xu Y,Sun Y,Wang H,Qi J,Wan B,Ye W,Lin Y,Shao Y,Dong S,Tyler BM,Wang Y

    更新日期:2018-02-09 00:00:00

  • Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-13138-w

    authors: Weinert LA,Chaudhuri RR,Wang J,Peters SE,Corander J,Jombart T,Baig A,Howell KJ,Vehkala M,Välimäki N,Harris D,Chieu TTB,Van Vinh Chau N,Campbell J,Schultsz C,Parkhill J,Bentley SD,Langford PR,Rycroft AN,Wren BW,Far

    更新日期:2019-11-22 00:00:00

  • GWAS of 89,283 individuals identifies genetic variants associated with self-reporting of being a morning person.

    abstract::Circadian rhythms are a nearly universal feature of living organisms and affect almost every biological process. Our innate preference for mornings or evenings is determined by the phase of our circadian rhythms. We conduct a genome-wide association analysis of self-reported morningness, followed by analyses of biolog...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10448

    authors: Hu Y,Shmygelska A,Tran D,Eriksson N,Tung JY,Hinds DA

    更新日期:2016-02-02 00:00:00

  • CD19 CAR immune pressure induces B-precursor acute lymphoblastic leukaemia lineage switch exposing inherent leukaemic plasticity.

    abstract::Adoptive immunotherapy using chimeric antigen receptor (CAR) expressing T cells targeting the CD19 B lineage receptor has demonstrated marked success in relapsed pre-B-cell acute lymphoblastic leukaemia (ALL). Persisting CAR-T cells generate sustained pressure against CD19 that may drive unique mechanisms of resistanc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12320

    authors: Jacoby E,Nguyen SM,Fountaine TJ,Welp K,Gryder B,Qin H,Yang Y,Chien CD,Seif AE,Lei H,Song YK,Khan J,Lee DW,Mackall CL,Gardner RA,Jensen MC,Shern JF,Fry TJ

    更新日期:2016-07-27 00:00:00

  • Unexpected seasonality in quantity and composition of Amazon rainforest air reactivity.

    abstract::The hydroxyl radical (OH) removes most atmospheric pollutants from air. The loss frequency of OH radicals due to the combined effect of all gas-phase OH reactive species is a measureable quantity termed total OH reactivity. Here we present total OH reactivity observations in pristine Amazon rainforest air, as a functi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10383

    authors: Nölscher AC,Yañez-Serrano AM,Wolff S,de Araujo AC,Lavrič JV,Kesselmeier J,Williams J

    更新日期:2016-01-22 00:00:00

  • Complete chemical structures of human mitochondrial tRNAs.

    abstract::Mitochondria generate most cellular energy via oxidative phosphorylation. Twenty-two species of mitochondrial (mt-)tRNAs encoded in mtDNA translate essential subunits of the respiratory chain complexes. mt-tRNAs contain post-transcriptional modifications introduced by nuclear-encoded tRNA-modifying enzymes. They are r...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18068-6

    authors: Suzuki T,Yashiro Y,Kikuchi I,Ishigami Y,Saito H,Matsuzawa I,Okada S,Mito M,Iwasaki S,Ma D,Zhao X,Asano K,Lin H,Kirino Y,Sakaguchi Y,Suzuki T

    更新日期:2020-08-28 00:00:00

  • Nanoscale geochemical and geomechanical characterization of organic matter in shale.

    abstract::Solid organic matter (OM) plays an essential role in the generation, migration, storage, and production of hydrocarbons from economically important shale rock formations. Electron microscopy images have documented spatial heterogeneity in the porosity of OM at nanoscale, and bulk spectroscopy measurements have documen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02254-0

    authors: Yang J,Hatcherian J,Hackley PC,Pomerantz AE

    更新日期:2017-12-19 00:00:00

  • Negative magnetoresistance without well-defined chirality in the Weyl semimetal TaP.

    abstract::Weyl semimetals (WSMs) are topological quantum states wherein the electronic bands disperse linearly around pairs of nodes with fixed chirality, the Weyl points. In WSMs, nonorthogonal electric and magnetic fields induce an exotic phenomenon known as the chiral anomaly, resulting in an unconventional negative longitud...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11615

    authors: Arnold F,Shekhar C,Wu SC,Sun Y,Dos Reis RD,Kumar N,Naumann M,Ajeesh MO,Schmidt M,Grushin AG,Bardarson JH,Baenitz M,Sokolov D,Borrmann H,Nicklas M,Felser C,Hassinger E,Yan B

    更新日期:2016-05-17 00:00:00

  • Publisher Correction: Control of laser plasma accelerated electrons for light sources.

    abstract::The original version of this Article contained an error in the last sentence of the first paragraph of the Introduction and incorrectly read 'A proper electron beam control is one of the main challenges towards the Graal of developing a compact alternative of X-ray free-electron lasers by coupling LWFA gigaelectron-vo...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-018-04299-1

    authors: André T,Andriyash IA,Loulergue A,Labat M,Roussel E,Ghaith A,Khojoyan M,Thaury C,Valléau M,Briquez F,Marteau F,Tavakoli K,N'Gotta P,Dietrich Y,Lambert G,Malka V,Benabderrahmane C,Vétéran J,Chapuis L,El Ajjouri T,Se

    更新日期:2018-05-02 00:00:00

  • Exploiting the speckle-correlation scattering matrix for a compact reference-free holographic image sensor.

    abstract::The word 'holography' means a drawing that contains all of the information for light-both amplitude and wavefront. However, because of the insufficient bandwidth of current electronics, the direct measurement of the wavefront of light has not yet been achieved. Though reference-field-assisted interferometric methods h...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13359

    authors: Lee K,Park Y

    更新日期:2016-10-31 00:00:00

  • Self-templated synthesis of uniform hollow spheres based on highly conjugated three-dimensional covalent organic frameworks.

    abstract::Covalent organic frameworks (COFs) have served as a family of porous crystalline molecules for various promising applications. However, controllable synthesis of COFs with uniform morphology is paramount yet still remains quite challenging. Herein, we report self-templated synthesis of uniform and unique hollow sphere...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18844-4

    authors: Liu YY,Li XC,Wang S,Cheng T,Yang H,Liu C,Gong Y,Lai WY,Huang W

    更新日期:2020-11-03 00:00:00

  • Repositioning tolcapone as a potent inhibitor of transthyretin amyloidogenesis and associated cellular toxicity.

    abstract::Transthyretin (TTR) is a plasma homotetrameric protein implicated in fatal systemic amyloidoses. TTR tetramer dissociation precedes pathological TTR aggregation. Native state stabilizers are promising drugs to treat TTR amyloidoses. Here we repurpose tolcapone, an FDA-approved molecule for Parkinson's disease, as a po...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10787

    authors: Sant'Anna R,Gallego P,Robinson LZ,Pereira-Henriques A,Ferreira N,Pinheiro F,Esperante S,Pallares I,Huertas O,Almeida MR,Reixach N,Insa R,Velazquez-Campoy A,Reverter D,Reig N,Ventura S

    更新日期:2016-02-23 00:00:00

  • Single-cell TCR sequencing reveals phenotypically diverse clonally expanded cells harboring inducible HIV proviruses during ART.

    abstract::Clonal expansions occur in the persistent HIV reservoir as shown by the duplication of proviral integration sites. However, the source of the proliferation of HIV-infected cells remains unclear. Here, we analyze the TCR repertoire of single HIV-infected cells harboring translation-competent proviruses in longitudinal ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17898-8

    authors: Gantner P,Pagliuzza A,Pardons M,Ramgopal M,Routy JP,Fromentin R,Chomont N

    更新日期:2020-08-14 00:00:00

  • Single-shot link discovery for terahertz wireless networks.

    abstract::Of the many challenges in building a wireless network at terahertz frequencies, link discovery remains one of the most critical and least explored. In a network of mobile receivers using narrow directional beams, how do the nodes rapidly locate each other? This direction information is crucial for beam forming and ste...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15761-4

    authors: Ghasempour Y,Shrestha R,Charous A,Knightly E,Mittleman DM

    更新日期:2020-04-24 00:00:00

  • Truncation and constitutive activation of the androgen receptor by diverse genomic rearrangements in prostate cancer.

    abstract::Molecularly targeted therapies for advanced prostate cancer include castration modalities that suppress ligand-dependent transcriptional activity of the androgen receptor (AR). However, persistent AR signalling undermines therapeutic efficacy and promotes progression to lethal castration-resistant prostate cancer (CRP...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13668

    authors: Henzler C,Li Y,Yang R,McBride T,Ho Y,Sprenger C,Liu G,Coleman I,Lakely B,Li R,Ma S,Landman SR,Kumar V,Hwang TH,Raj GV,Higano CS,Morrissey C,Nelson PS,Plymate SR,Dehm SM

    更新日期:2016-11-29 00:00:00

  • TET2 repression by androgen hormone regulates global hydroxymethylation status and prostate cancer progression.

    abstract::Modulation of epigenetic patterns has promising efficacy for treating cancer. 5-Hydroxymethylated cytosine (5-hmC) is an epigenetic mark potentially important in cancer. Here we report that 5-hmC is an epigenetic hallmark of prostate cancer (PCa) progression. A member of the ten-eleven translocation (TET) proteins, wh...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9219

    authors: Takayama K,Misawa A,Suzuki T,Takagi K,Hayashizaki Y,Fujimura T,Homma Y,Takahashi S,Urano T,Inoue S

    更新日期:2015-09-25 00:00:00

  • KMT2D/MLL2 inactivation is associated with recurrence in adult-type granulosa cell tumors of the ovary.

    abstract::Adult-type granulosa cell tumors of the ovary (aGCTs) are rare gynecologic malignancies that exhibit a high frequency of somatic FOXL2 c.C402G (p.Cys134Trp) mutation. Treatment of relapsed aGCT remains a significant clinical challenge. Here we show, using whole-exome and cancer gene panel sequencing of 79 aGCTs from t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04950-x

    authors: Hillman RT,Celestino J,Terranova C,Beird HC,Gumbs C,Little L,Nguyen T,Thornton R,Tippen S,Zhang J,Lu KH,Gershenson DM,Rai K,Broaddus RR,Futreal PA

    更新日期:2018-06-27 00:00:00

  • Single-shot spectro-temporal characterization of XUV pulses from a seeded free-electron laser.

    abstract::Intense ultrashort X-ray pulses produced by modern free-electron lasers (FELs) allow one to probe biological systems, inorganic materials and molecular reaction dynamics with nanoscale spatial and femtoscale temporal resolution. These experiments require the knowledge, and possibly the control, of the spectro-temporal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9075

    authors: De Ninno G,Gauthier D,Mahieu B,Ribič PR,Allaria E,Cinquegrana P,Danailov MB,Demidovich A,Ferrari E,Giannessi L,Penco G,Sigalotti P,Stupar M

    更新日期:2015-08-20 00:00:00

  • High-throughput preparation of radioprotective polymers via Hantzsch's reaction for in vivo X-ray damage determination.

    abstract::Radioprotectors for acute injuries caused by large doses of ionizing radiation are vital to national security, public health and future development of humankind. Here, we develop a strategy to explore safe and efficient radioprotectors by combining Hantzsch's reaction, high-throughput methods and polymer chemistry. A ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20027-0

    authors: Liu G,Zeng Y,Lv T,Mao T,Wei Y,Jia S,Gou Y,Tao L

    更新日期:2020-12-04 00:00:00

  • Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis.

    abstract::Single-cell RNA-sequencing (scRNA-Seq) is a compelling approach to directly and simultaneously measure cellular composition and state, which can otherwise only be estimated by applying deconvolution methods to bulk RNA-Seq estimates. However, it has not yet become a widely used tool in population-scale analyses, due t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19365-w

    authors: Mandric I,Schwarz T,Majumdar A,Hou K,Briscoe L,Perez R,Subramaniam M,Hafemeister C,Satija R,Ye CJ,Pasaniuc B,Halperin E

    更新日期:2020-10-30 00:00:00

  • Exploring patterns enriched in a dataset with contrastive principal component analysis.

    abstract::Visualization and exploration of high-dimensional data is a ubiquitous challenge across disciplines. Widely used techniques such as principal component analysis (PCA) aim to identify dominant trends in one dataset. However, in many settings we have datasets collected under different conditions, e.g., a treatment and a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04608-8

    authors: Abid A,Zhang MJ,Bagaria VK,Zou J

    更新日期:2018-05-30 00:00:00

  • Synthetic TRuC receptors engaging the complete T cell receptor for potent anti-tumor response.

    abstract::T cells expressing CD19-targeting chimeric antigen receptors (CARs) reveal high efficacy in the treatment of B cell malignancies. Here, we report that T cell receptor fusion constructs (TRuCs) comprising an antibody-based binding domain fused to T cell receptor (TCR) subunits can effectively reprogram an intact TCR co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10097-0

    authors: Baeuerle PA,Ding J,Patel E,Thorausch N,Horton H,Gierut J,Scarfo I,Choudhary R,Kiner O,Krishnamurthy J,Le B,Morath A,Baldeviano GC,Quinn J,Tavares P,Wei Q,Weiler S,Maus MV,Getts D,Schamel WW,Hofmeister R

    更新日期:2019-05-07 00:00:00

  • Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging.

    abstract::Monomeric near-infrared (NIR) fluorescent proteins (FPs) are in high demand as protein tags and components of biosensors for deep-tissue imaging and multicolour microscopy. We report three bright and spectrally distinct monomeric NIR FPs, termed miRFPs, engineered from bacterial phytochrome, which can be used as easil...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12405

    authors: Shcherbakova DM,Baloban M,Emelyanov AV,Brenowitz M,Guo P,Verkhusha VV

    更新日期:2016-08-19 00:00:00

  • Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers.

    abstract::Intracellular traffic between compartments of the secretory and endocytic pathways is mediated by vesicle-based carriers. The proteomes of carriers destined for many organelles are ill-defined because the vesicular intermediates are transient, low-abundance and difficult to purify. Here, we combine vesicle relocalisat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19840-4

    authors: Shin JJH,Crook OM,Borgeaud AC,Cattin-Ortolá J,Peak-Chew SY,Breckels LM,Gillingham AK,Chadwick J,Lilley KS,Munro S

    更新日期:2020-11-25 00:00:00

  • Endothelin-1 signaling maintains glial progenitor proliferation in the postnatal subventricular zone.

    abstract::Signaling molecules that regulate neurodevelopmental processes in the early postnatal subventricular zone (SVZ) are critical for proper brain development yet remain poorly characterized. Here, we report that Endothelin-1 (ET-1), a molecular component of the postnatal SVZ, promotes radial glial cell maintenance and pro...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16028-8

    authors: Adams KL,Riparini G,Banerjee P,Breur M,Bugiani M,Gallo V

    更新日期:2020-05-01 00:00:00

  • IGF-1 promotes the development and cytotoxic activity of human NK cells.

    abstract::Insulin-like growth factor 1 (IGF-1) is a critical regulator of many physiological functions, ranging from longevity to immunity. However, little is known about the role of IGF-1 in natural killer cell development and function. Here, we identify an essential role for IGF-1 in the positive regulation of human natural k...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2484

    authors: Ni F,Sun R,Fu B,Wang F,Guo C,Tian Z,Wei H

    更新日期:2013-01-01 00:00:00

  • Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals.

    abstract::Germline removal provokes longevity in several species and shifts resources towards survival and repair. Several Caenorhabditis elegans transcription factors regulate longevity arising from germline removal; yet, how they work together is unknown. Here we identify a Myc-like HLH transcription factor network comprised ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10944

    authors: Nakamura S,Karalay Ö,Jäger PS,Horikawa M,Klein C,Nakamura K,Latza C,Templer SE,Dieterich C,Antebi A

    更新日期:2016-03-22 00:00:00