当前位置： SCI文献检索 > MOLECULAR PHYLOGENETICS AND EVOLUTION期刊下所有文献 > Speciation with introgression: Phylogeography and systematics of the Ameerega petersi group (Dendrobatidae).

Speciation with introgression: Phylogeography and systematics of the Ameerega petersi group (Dendrobatidae).

Abstract：

:The Tropical Andes contains exceptionally high diversity, much of it arising within the Quaternary period. The complex geology of the Andes and paleoclimate fluctuations within the Quaternary suggest complex speciation scenarios. This, in turn, has contributed to idiosyncratic speciation modes among shallowly diverged Amazonian taxa. Many relationships among these taxa remain poorly resolved. Here we use a sequence capture approach, ultraconserved elements (UCEs), to address the phylogenetic relationships among three recently diverged Peruvian Ameerega poison frog species (A. cainarachi, A. petersi, and A. smaragdina; family Dendrobatidae) and explore a possible mode of speciation in this group. We assess concordance among concatenated phylogenetic tree inference, gene-tree based species tree inference, SNP-based species tree inference, and Bayes factor lineage delimitation to resolve species boundaries. We complement these analyses with assessments of call divergence to address the presence of a prezygotic reproductive barrier. Additionally, we further explore the phylogeographic history of these species of Ameerega with demographic inference, considering evidence for admixture and population expansions. Our results support the synonymy of A. smaragdina as a junior synonym of A. petersi and we find that speciation in this group is characterized by admixture and signatures of a population bottleneck followed by expansion. We invoke the disturbance-vicariance hypothesis to explain the observed patterns and call for more, detailed investigations of in-situ speciation in the Tropical Andes.

journal_name

Mol Phylogenet Evol

journal_title

Molecular phylogenetics and evolution

authors

French CM,Deutsch MS,Chávez G,Almora CE,Brown JL

doi

10.1016/j.ympev.2019.05.021

subject

Has Abstract

pub_date

2019-09-01 00:00:00

pages

31-42

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(19)30010-7

journal_volume

138

pub_type

杂志文章

相关文献

MOLECULAR PHYLOGENETICS AND EVOLUTION文献大全
  • Molecular phylogeny and character evolution in the Western Palaearctic Helicidae s.l. (Gastropoda: Stylommatophora).

    abstract：:In this study, we present a molecular phylogeny for the west Palaearctic Helicidae sensu lato based on sequence data from two mitochondrial (COI, 16S rDNA) and two nuclear (ITS-1, 18S rDNA) genes. Maximum likelihood analysis and Bayesian inference revealed well supported monophyletic clades partly conflicting traditio...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2004.03.004

    authors： Steinke D,Albrecht C,Pfenninger M

    更新日期：2004-09-01 00:00:00

  • A phylogenetic analysis of the Arecoid Line of palms based on plastid DNA sequence data.

    abstract：:A phylogenetic analysis of the Arecoid Line (sensu Moore) of palms was conducted using 7 kb of coding and noncoding plastid DNA sequence data. Recovered maximum-parsimony and maximum-likelihood phylogenies support monophyly for the Arecoid Line relative to the rest of the family but paraphyly for subfamily Arecoideae ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/S1055-7903(02)00022-2

    authors： Hahn WJ

    更新日期：2002-05-01 00:00:00

  • Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes.

    abstract：:Recent studies have shown that species in the genus Myotis have evolved a number of convergent morphological traits, many of which are more related to their mode of food procurement than to their phylogeny. Surprisingly, the biogeographic origins of these species are a much better predictor of phylogenetic relationshi...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2006.06.019

    authors： Stadelmann B,Lin LK,Kunz TH,Ruedi M

    更新日期：2007-04-01 00:00:00

  • Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences.

    abstract：:In spite of several classification attempts among taxa of the genus Lepus, phylogenetic relationships still remain poorly understood. Here, we present molecular genetic evidence that may resolve some of the current incongruities in the phylogeny of the leporids. The complete mitochondrial cytb, 12S genes, and parts of...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2005.05.006

    authors： Wu C,Wu J,Bunch TD,Li Q,Wang Y,Zhang YP

    更新日期：2005-10-01 00:00:00

  • Molecular phylogenetics of 'river dolphins' and the baiji mitochondrial genome.

    abstract：:It is well known that the classical river dolphins are not a natural group, but up to now the phylogenetic relationships among them are not very clear because different views have been referred from different studies. In the present study, we determined the complete nucleotide sequence of the mitochondrial (mt) genome...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2005.06.009

    authors： Yan J,Zhou K,Yang G

    更新日期：2005-12-01 00:00:00

  • Further consideration on the phylogeny of the Ciliophora: Analyses using both mitochondrial and nuclear data with focus on the extremely confused class Phyllopharyngea.

    abstract：:Most ciliate phylogenetic analyses have largely relied on the nuclear small subunit ribosome DNA (nSSU-rDNA) locus. However, single locus or multi-loci from the same genome or chromosome may not be sufficient enough to elucidate phylogenetic relationships among ciliate taxa. Therefore, in addition to nSSU-rDNA, the mi...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2017.04.018

    authors： Wang P,Wang Y,Wang C,Zhang T,Al-Farraj SA,Gao F

    更新日期：2017-07-01 00:00:00

  • Molecular phylogeny and biogeography of the weevil subfamily Platypodinae reveals evolutionarily conserved range patterns.

    abstract：:Platypodinae is a peculiar weevil subfamily of species that cultivate fungi in tunnels excavated in dead wood. Their geographical distribution is generally restricted, with genera confined to a single continent or large island, which provides a useful system for biogeographical research. This study establishes the fir...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2015.05.028

    authors： Jordal BH

    更新日期：2015-11-01 00:00:00

  • Phylogeographic and diversification patterns of the white-nosed coati (Nasua narica): Evidence for south-to-north colonization of North America.

    abstract：:White-nosed coatis (Nasua narica) are widely distributed throughout North, Central, and South America, but the patterns of temporal and spatial diversification that have contributed to this distribution are unknown. In addition, the biogeographic history of procyonid species in the Americas remains contentious. Using ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2018.11.011

    authors： Nigenda-Morales SF,Gompper ME,Valenzuela-Galván D,Lay AR,Kapheim KM,Hass C,Booth-Binczik SD,Binczik GA,Hirsch BT,McColgin M,Koprowski JL,McFadden K,Wayne RK,Koepfli KP

    更新日期：2019-02-01 00:00:00

  • Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution.

    abstract：:Virtually no information regarding timing of deep lineage divergences within mosquito family (Culicidae) exists, which poses an important problem in the postgenomic era. To address this issue, the complete 15,354 bp mitochondrial genome of Anopheles funestus was assembled from both mtDNA and cDNA sequences generated f...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2006.01.006

    authors： Krzywinski J,Grushko OG,Besansky NJ

    更新日期：2006-05-01 00:00:00

  • Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa.

    abstract：:The deepest-level relationships amongst Euglenozoa remain poorly resolved, despite a rich history of morphological examination and numerous molecular phylogenetic studies of small subunit ribosomal RNA (SSU rRNA) data. We address this question using two nuclear-encoded proteins, the cytosolic isoforms of heat shock pr...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/s1055-7903(03)00177-5

    authors： Simpson AG,Roger AJ

    更新日期：2004-01-01 00:00:00

  • A phylogenetic hypothesis for the recently diversified Ruschieae (Aizoaceae) in southern Africa.

    abstract：:The Ruschieae is a large tribe of about 1600 species of succulent perennials. They form a major component of the arid parts of the Greater Cape Floristic Region, both in numbers of species and in their density of coverage. So far phylogenetic relationships within the tribe have been unresolved, largely through the pau...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2013.05.030

    authors： Klak C,Bruyns PV,Hanáček P

    更新日期：2013-12-01 00:00:00

  • Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago.

    abstract：:The extant endemic katydids (Orthoptera: Tettigoniidae) of the Hawaiian Archipelago include one to three species per high island and a single species on Nihoa, all currently placed in the genus Banza. These acoustic insects provide an excellent opportunity for investigating the evolution of reproductive isolation and ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2006.04.006

    authors： Shapiro LH,Strazanac JS,Roderick GK

    更新日期：2006-10-01 00:00:00

  • Inferring the phylogenetic position of Boa constrictor among the Boinae.

    abstract：:Snakes of the subfamily Boinae are found in Madagascar, the Papuan-Pacific Islands, and the Neotropics. It has been suggested that genera within each of these particular areas do not form monophyletic groups. Further, it was proposed that the New World Boa constrictor is more closely related to boine genera in Madagas...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2004.08.017

    authors： Burbrink FT

    更新日期：2005-01-01 00:00:00

  • Rapid chromosomal evolution in a morphologically cryptic radiation.

    abstract：:Cryptic species occur within most of the major taxonomic divisions, and a current challenge is to determine why some lineages have more cryptic species than others. It is expected that cryptic species are more common in groups where there are life histories or genetic architectures that promote speciation in the absen...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2014.03.015

    authors： Mills PJ,Cook LG

    更新日期：2014-08-01 00:00:00

  • Analysis of the distribution of bootstrap tree lengths using the maximum parsimony method.

    abstract：:The bootstrap is an important tool for estimating the confidence interval of monophyletic groups within phylogenies. Although bootstrap analyses are used in most evolutionary studies, there is no clear consensus as how best to interpret bootstrap probability values. To study further the bootstrap method, nine small su...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.1996.0084

    authors： Bhattacharya D

    更新日期：1996-12-01 00:00:00

  • Molecular phylogenetics of Caenogastropoda (Gastropoda: Mollusca).

    abstract：:Caenogastropoda is the dominant group of marine gastropods in terms of species numbers, diversity of habit and habitat and ecological importance. This paper reports the first comprehensive multi-gene phylogenetic study of the group. Data were collected from up to six genes comprising parts of 18S rRNA, 28S rRNA (five ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2006.10.009

    authors： Colgan DJ,Ponder WF,Beacham E,Macaranas J

    更新日期：2007-03-01 00:00:00

  • Phylotranscriptomics resolves interspecific relationships and indicates multiple historical out-of-North America dispersals through the Bering Land Bridge for the genus Picea (Pinaceae).

    abstract：:A robust phylogeny is prerequisite to understand the evolution and biogeography of organisms. However, ancient and recent evolutionary radiations occurred in many plant lineages, which pose great challenges for phylogenetic analysis, especially for conifers characterized by large effective population sizes and long ge...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2019.106610

    authors： Shao CC,Shen TT,Jin WT,Mao HJ,Ran JH,Wang XQ

    更新日期：2019-12-01 00:00:00

  • The genus Coleodactylus (Sphaerodactylinae, Gekkota) revisited: a molecular phylogenetic perspective.

    abstract：:Nucleotide sequence data from a mitochondrial gene (16S) and two nuclear genes (c-mos, RAG-1) were used to evaluate the monophyly of the genus Coleodactylus, to provide the first phylogenetic hypothesis of relationships among its species in a cladistic framework, and to estimate the relative timing of species divergen...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2008.05.043

    authors： Geurgas SR,Rodrigues MT,Moritz C

    更新日期：2008-10-01 00:00:00

  • Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data.

    abstract：:The Drosophila virilis group is one of the major lineages of Drosophila previously recognised and it has been used as a model for different types of studies. It comprises 13 species whose phylogenetic relationships are not well resolved. In the present study, six nuclear genes (Adh, fused, Gpdh, NonA, CG9631 and CG721...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2011.04.022

    authors： Morales-Hojas R,Reis M,Vieira CP,Vieira J

    更新日期：2011-08-01 00:00:00

  • Mustela or Vison? Evidence for the taxonomic status of the American mink and a distinct biogeographic radiation of American weasels.

    abstract：:The American mink's relationship to the weasels in Mustela has been uncertain. Karyological, morphological, and phylogenetic comparisons to Eurasian Mustela support placing the mink outside the genus as Neovison vison. However, genetic comparisons that incorporate other endemic American Mustela suggest the interpretat...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2009.05.036

    authors： Harding LE,Smith FA

    更新日期：2009-09-01 00:00:00

  • Comparative analysis of phylogenetic relationships of grain amaranths and their wild relatives (Amaranthus; Amaranthaceae) using internal transcribed spacer, amplified fragment length polymorphism, and double-primer fluorescent intersimple sequence repeat

    abstract：:The most economically important group of species in the genus Amaranthus is the A. hybridus species complex, including three cultivated grain amaranths, A. cruentus, A. caudatus, and A. hypochondriacus, and their putative wild progenitors, A. hybridus, A. quitensis, and A. powellii. Taxonomic confusion exists among th...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.2001.1016

    authors： Xu F,Sun M

    更新日期：2001-12-01 00:00:00

  • Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia).

    abstract：:Next-generation genomic sequencing promises to quickly and cheaply resolve remaining contentious nodes in the Tree of Life, and facilitates species-tree estimation while taking into account stochastic genealogical discordance among loci. Recent methods for estimating species trees bypass full likelihood-based estimate...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2014.08.023

    authors： Pyron RA,Hendry CR,Chou VM,Lemmon EM,Lemmon AR,Burbrink FT

    更新日期：2014-12-01 00:00:00

  • Molecular phylogeny and biogeography of the wall-lizard Podarcis erhardii (Squamata: Lacertidae).

    abstract：:Erhard's wall lizard, Podarcis erhardii (Sauria: Lacertidae), is highly diversified in Greece and especially in the southern Aegean region. Out of the 28 recognized subspecies, 27 are found in Greece from the North Sporades island-complex in the North Aegean (grossly south of the 39th parallel) to the island of Crete ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/s1055-7903(03)00037-x

    authors： Poulakakis N,Lymberakis P,Antoniou A,Chalkia D,Zouros E,Mylonas M,Valakos E

    更新日期：2003-07-01 00:00:00

  • Phylogenomic inference of species and subspecies diversity in the Palearctic salamander genus Salamandra.

    abstract：:The salamander genus Salamandra is widespread across Europe, North Africa, and the Near East and is renowned for its conspicuous and polymorphic colouration and diversity of reproductive modes. The phylogenetic relationships within the genus, and especially in the highly polymorphic species S. salamandra, have been ve...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2020.107063

    authors： Burgon JD,Vences M,Steinfartz S,Bogaerts S,Bonato L,Donaire-Barroso D,Martínez-Solano I,Velo-Antón G,Vieites DR,Mable BK,Elmer KR

    更新日期：2020-12-31 00:00:00

  • Distinct Bradyrhizobium [corrected] communities nodulate legumes native to temperate and tropical monsoon Australia.

    abstract：:Geographic isolation and growing climate aridity played major roles in the evolution of Australian legumes. It is likely that these two factors also impacted on the evolution of their root-nodule bacteria. To investigate this issue, we applied a multilocus sequence analysis (MLSA) approach to examine Bradyrhizobium is...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2011.12.020

    authors： Stępkowski T,Watkin E,McInnes A,Gurda D,Gracz J,Steenkamp ET

    更新日期：2012-05-01 00:00:00

  • Extracting phylogenetic signal from phylogenomic data: Higher-level relationships of the nightbirds (Strisores).

    abstract：:A well-resolved phylogeny would facilitate study of adaptation to nocturnality in the avian superorder Strisores, a group that includes both nocturnal and diurnal lineages. Based on previous estimates, it could be hypothesized that there were multiple independent origins of nocturnality in this group. In order to refi...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2019.106611

    authors： White ND,Braun MJ

    更新日期：2019-12-01 00:00:00

  • Nuclear ribosomal DNA sequence variation and evolution of spotted marsh-orchids (Dactylorhiza maculata group).

    abstract：:Sequences of both internal and external transcribed spacers of nuclear ribosomal DNA were sequenced for four species belonging to the Dactylorhiza maculata group or "spotted marsh-Orchids". These four species are D. fuchsii, D. saccifera, D. foliosa, and D. maculata. Extensive nuclear ribosomal DNA polymorphism was un...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2005.04.014

    authors： Devos N,Oh SH,Raspé O,Jacquemart AL,Manos PS

    更新日期：2005-09-01 00:00:00

  • Core genome phylogenetic analysis of the avian associated Borrelia turdi indicates a close relationship to Borrelia garinii.

    abstract：:Borrelia burgdorferi sensu lato comprises a species complex of tick-transmitted bacteria that includes the agents of human Lyme borreliosis. Borrelia turdi is a genospecies of this complex that exists in cryptic transmission cycles mainly between ornithophilic tick vectors and their avian hosts. The species has been o...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2018.10.044

    authors： Margos G,Becker NS,Fingerle V,Sing A,Ramos JA,Carvalho IL,Norte AC

    更新日期：2019-02-01 00:00:00

  • The structure and evolution of the ribosomal proteins encoded in the spc operon of the archaeon (Crenarchaeota) Sulfolobus acidocaldarius.

    abstract：:The genes for nine ribosomal proteins, L24, L5, S14, S8, L6, L18, S5, L30, and L15, have been isolated and sequenced from the spc operon in the archaeon (Crenarchaeota) Sulfolobus acidocaldarius, and the putative amino acid sequence of the proteins coded by these genes has been determined. In addition, three other gen...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.1998.0607

    authors： Yang D,Kusser I,Köpke AK,Koop BF,Matheson AT

    更新日期：1999-07-01 00:00:00

  • Phylogeography of the ring-necked pheasant (Phasianus colchicus) in China.

    abstract：:The ring-necked pheasants (Phasianus colchicus) are widely distributed in China. We used mitochondrial DNA control-region data to investigate the origin and past demographic changes in 139 ring-necked pheasants (P. colchicus) sampled from the species' distribution range. A total of 1078 nucleotides from the control re...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2009.03.015

    authors： Qu J,Liu N,Bao X,Wang X

    更新日期：2009-07-01 00:00:00