Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling.

Abstract:

:ATP-dependent chromatin remodelling enzymes (remodellers) regulate DNA accessibility in eukaryotic genomes. Many remodellers reposition (slide) nucleosomes, however, how DNA is propagated around the histone octamer during this process is unclear. Here we examine the real-time coordination of remodeller-induced DNA movements on both sides of the nucleosome using three-colour single-molecule FRET. During sliding by Chd1 and SNF2h remodellers, DNA is shifted discontinuously, with movement of entry-side DNA preceding that of exit-side DNA. The temporal delay between these movements implies a single rate-limiting step dependent on ATP binding and transient absorption or buffering of at least one base pair. High-resolution cross-linking experiments show that sliding can be achieved by buffering as few as 3 bp between entry and exit sides of the nucleosome. We propose that DNA buffering ensures nucleosome stability during ATP-dependent remodelling, and provides a means for communication between remodellers acting on opposite sides of the nucleosome.

journal_name

Nat Commun

journal_title

Nature communications

authors

Sabantsev A,Levendosky RF,Zhuang X,Bowman GD,Deindl S

doi

10.1038/s41467-019-09657-1

subject

Has Abstract

pub_date

2019-04-12 00:00:00

pages

1720

issue

1

issn

2041-1723

pii

10.1038/s41467-019-09657-1

journal_volume

10

pub_type

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