Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups.

Abstract:

:The rates and routes of lethal systemic spread in breast cancer are poorly understood owing to a lack of molecularly characterized patient cohorts with long-term, detailed follow-up data. Long-term follow-up is especially important for those with oestrogen-receptor (ER)-positive breast cancers, which can recur up to two decades after initial diagnosis1-6. It is therefore essential to identify patients who have a high risk of late relapse7-9. Here we present a statistical framework that models distinct disease stages (locoregional recurrence, distant recurrence, breast-cancer-related death and death from other causes) and competing risks of mortality from breast cancer, while yielding individual risk-of-recurrence predictions. We apply this model to 3,240 patients with breast cancer, including 1,980 for whom molecular data are available, and delineate spatiotemporal patterns of relapse across different categories of molecular information (namely immunohistochemical subtypes; PAM50 subtypes, which are based on gene-expression patterns10,11; and integrative or IntClust subtypes, which are based on patterns of genomic copy-number alterations and gene expression12,13). We identify four late-recurring integrative subtypes, comprising about one quarter (26%) of tumours that are both positive for ER and negative for human epidermal growth factor receptor 2, each with characteristic tumour-driving alterations in genomic copy number and a high risk of recurrence (mean 47-62%) up to 20 years after diagnosis. We also define a subgroup of triple-negative breast cancers in which cancer rarely recurs after five years, and a separate subgroup in which patients remain at risk. Use of the integrative subtypes improves the prediction of late, distant relapse beyond what is possible with clinical covariates (nodal status, tumour size, tumour grade and immunohistochemical subtype). These findings highlight opportunities for improved patient stratification and biomarker-driven clinical trials.

journal_name

Nature

journal_title

Nature

authors

Rueda OM,Sammut SJ,Seoane JA,Chin SF,Caswell-Jin JL,Callari M,Batra R,Pereira B,Bruna A,Ali HR,Provenzano E,Liu B,Parisien M,Gillett C,McKinney S,Green AR,Murphy L,Purushotham A,Ellis IO,Pharoah PD,Rueda C,Apari

doi

10.1038/s41586-019-1007-8

subject

Has Abstract

pub_date

2019-03-01 00:00:00

pages

399-404

issue

7748

eissn

0028-0836

issn

1476-4687

pii

10.1038/s41586-019-1007-8

journal_volume

567

pub_type

杂志文章

相关文献

NATURE文献大全
  • Publisher Correction: Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.

    abstract::In this Article, owing to an error during the production process, in Fig. 1a, the dark blue and light blue wedges were incorrectly labelled as 'G•C → T•A' and 'G•C → A•T', instead of 'C•G → T•A' and 'C•G → A•T', respectively. Fig. 1 has been corrected online. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-018-0070-x

    authors: Gaudelli NM,Komor AC,Rees HA,Packer MS,Badran AH,Bryson DI,Liu DR

    更新日期:2018-07-01 00:00:00

  • An unusual carbon-carbon bond cleavage reaction during phosphinothricin biosynthesis.

    abstract::Natural products containing phosphorus-carbon bonds have found widespread use in medicine and agriculture. One such compound, phosphinothricin tripeptide, contains the unusual amino acid phosphinothricin attached to two alanine residues. Synthetic phosphinothricin (glufosinate) is a component of two top-selling herbic...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature07972

    authors: Cicchillo RM,Zhang H,Blodgett JA,Whitteck JT,Li G,Nair SK,van der Donk WA,Metcalf WW

    更新日期:2009-06-11 00:00:00

  • Students need guidance in languages they speak.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07674-6

    authors: Rios Rojas C

    更新日期:2018-12-01 00:00:00

  • Cranial design and function in a large theropod dinosaur.

    abstract::Finite element analysis (FEA) is used by industrial designers and biomechanicists to estimate the performance of engineered structures or human skeletal and soft tissues subjected to varying regimes of stress and strain. FEA is rarely applied to problems of biomechanical design in animals, despite its potential to inf...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35059070

    authors: Rayfield EJ,Norman DB,Horner CC,Horner JR,Smith PM,Thomason JJ,Upchurch P

    更新日期:2001-02-22 00:00:00

  • Attentional requirements in a 'preattentive' feature search task.

    abstract::It is commonly assumed that certain features are so elementary to the visual system that they require no attentional resources to be perceived. Such 'preattentive' features are traditionally identified by visual search performance, in which the reaction time for detecting a feature difference against a set of distract...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/42940

    authors: Joseph JS,Chun MM,Nakayama K

    更新日期:1997-06-19 00:00:00

  • Requirement for nerve growth factor in the development of myelinated nociceptors in vivo.

    abstract::In adult animals, sensory neurons innervating the skin are phenotypically diverse. We have now investigated whether nerve growth factor (NGF) has a physiological role in the development of this diversity. We gave antisera against NGF to rats from postnatal day 1 (PND 1) to adulthood (5 weeks). We found a virtually com...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/350500a0

    authors: Ritter AM,Lewin GR,Kremer NE,Mendell LM

    更新日期:1991-04-11 00:00:00

  • P. falciparum rosetting mediated by a parasite-variant erythrocyte membrane protein and complement-receptor 1.

    abstract::The factors determining disease severity in malaria are complex and include host polymorphisms, acquired immunity and parasite virulence. Studies in Africa have shown that severe malaria is associated with the ability of erythrocytes infected with the parasite Plasmodium falciparum to bind uninfected erythrocytes and ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/40888

    authors: Rowe JA,Moulds JM,Newbold CI,Miller LH

    更新日期:1997-07-17 00:00:00

  • Imprisoned academics, China's Moon lander and AI moral code.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07667-5

    authors:

    更新日期:2018-12-01 00:00:00

  • Cotranslational assembly of protein complexes in eukaryotes revealed by ribosome profiling.

    abstract::The folding of newly synthesized proteins to the native state is a major challenge within the crowded cellular environment, as non-productive interactions can lead to misfolding, aggregation and degradation1. Cells cope with this challenge by coupling synthesis with polypeptide folding and by using molecular chaperone...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-018-0462-y

    authors: Shiber A,Döring K,Friedrich U,Klann K,Merker D,Zedan M,Tippmann F,Kramer G,Bukau B

    更新日期:2018-09-01 00:00:00

  • Lkb1 regulates cell cycle and energy metabolism in haematopoietic stem cells.

    abstract::Little is known about metabolic regulation in stem cells and how this modulates tissue regeneration or tumour suppression. We studied the Lkb1 tumour suppressor and its substrate AMP-activated protein kinase (AMPK), kinases that coordinate metabolism with cell growth. Deletion of the Lkb1 (also called Stk11) gene in m...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09571

    authors: Nakada D,Saunders TL,Morrison SJ

    更新日期:2010-12-02 00:00:00

  • A protein kinase homologue controls phosphorylation of ganciclovir in human cytomegalovirus-infected cells.

    abstract::Human cytomegalovirus (HCMV) is a major pathogen in immunosuppressed individuals, including patients with acquired immune deficiency syndrome. The nucleoside analogue ganciclovir (9-(1,3-dihydroxy-2-propoxymethyl)-guanine) is one of the few drugs available to treat HCMV infections, but resistant virus is a growing pro...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/358162a0

    authors: Sullivan V,Talarico CL,Stanat SC,Davis M,Coen DM,Biron KK

    更新日期:1992-07-09 00:00:00

  • A computational theory for the perception of coherent visual motion.

    abstract::When we see motion, our perception of how one image feature moves depends on the behaviour of other features nearby. In particular, the Gestaltists proposed the law of shared common fate, in which features tend to be perceived as moving together, that is, coherently. Recent psychophysical findings, such as the coopera...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/333071a0

    authors: Yuille AL,Grzywacz NM

    更新日期:1988-05-05 00:00:00

  • Seeing only the right half of the forest but cutting down all the trees?

    abstract::Unilateral neglect following damage to the right hemisphere of the brain can be characterized by failure of the global attentional mechanisms of the right hemisphere to direct the local detail processors of the left hemisphere towards the contralesional left hemispace. This is suggested by patients who recognize the g...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/27913

    authors: Doricchi F,Incoccia C

    更新日期:1998-07-02 00:00:00

  • Orbital forcing of Cretaceous river discharge in tropical Africa and ocean response.

    abstract::The tropics have been suggested as the drivers of global ocean and atmosphere circulation and biogeochemical cycling during the extreme warmth of the Cretaceous period; but the links between orbital forcing, freshwater runoff and the biogeochemistry of continental margins in extreme greenhouse conditions are not fully...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature03976

    authors: Beckmann B,Flögel S,Hofmann P,Schulz M,Wagner T

    更新日期:2005-09-08 00:00:00

  • A novel multiple-stage antimalarial agent that inhibits protein synthesis.

    abstract::There is an urgent need for new drugs to treat malaria, with broad therapeutic potential and novel modes of action, to widen the scope of treatment and to overcome emerging drug resistance. Here we describe the discovery of DDD107498, a compound with a potent and novel spectrum of antimalarial activity against multipl...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature14451

    authors: Baragaña B,Hallyburton I,Lee MC,Norcross NR,Grimaldi R,Otto TD,Proto WR,Blagborough AM,Meister S,Wirjanata G,Ruecker A,Upton LM,Abraham TS,Almeida MJ,Pradhan A,Porzelle A,Luksch T,Martínez MS,Luksch T,Bolscher JM,

    更新日期:2015-06-18 00:00:00

  • HER2 expression identifies dynamic functional states within circulating breast cancer cells.

    abstract::Circulating tumour cells in women with advanced oestrogen-receptor (ER)-positive/human epidermal growth factor receptor 2 (HER2)-negative breast cancer acquire a HER2-positive subpopulation after multiple courses of therapy. In contrast to HER2-amplified primary breast cancer, which is highly sensitive to HER2-targete...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature19328

    authors: Jordan NV,Bardia A,Wittner BS,Benes C,Ligorio M,Zheng Y,Yu M,Sundaresan TK,Licausi JA,Desai R,O'Keefe RM,Ebright RY,Boukhali M,Sil S,Onozato ML,Iafrate AJ,Kapur R,Sgroi D,Ting DT,Toner M,Ramaswamy S,Haas W,Mah

    更新日期:2016-09-01 00:00:00

  • The PIE-1 protein and germline specification in C. elegans embryos.

    abstract::Totipotent germline blastomeres in Caenorhabditis elegans contain, but do not respond to, factors that promote somatic differentiation in other embryonic cells. Mutations in the maternal gene pie-1 result in the germline blastomeres adopting somatic cell fates. Here we show that pie-1 encodes a nuclear protein, PIE-1,...

    journal_title:Nature

    pub_type: 信件

    doi:10.1038/382710a0

    authors: Mello CC,Schubert C,Draper B,Zhang W,Lobel R,Priess JR

    更新日期:1996-08-22 00:00:00

  • Cyclosporine induces cancer progression by a cell-autonomous mechanism.

    abstract::Malignancy is a common and dreaded complication following organ transplantation. The high incidence of neoplasm and its aggressive progression, which are associated with immunosuppressive therapy, are thought to be due to the resulting impairment of the organ recipient's immune-surveillance system. Here we report a me...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/17401

    authors: Hojo M,Morimoto T,Maluccio M,Asano T,Morimoto K,Lagman M,Shimbo T,Suthanthiran M

    更新日期:1999-02-11 00:00:00

  • Mechanism of presynaptic inhibition by neuropeptide Y at sympathetic nerve terminals.

    abstract::Calcium influx through voltage-sensitive Ca2+ channels is the normal physiological stimulus for the activity-dependent release of neurotransmitters at synaptic contacts. It has been postulated that presynaptic inhibition of transmitter release is due to a reduction in Ca2+ influx at the nerve terminal, which could res...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/364635a0

    authors: Toth PT,Bindokas VP,Bleakman D,Colmers WF,Miller RJ

    更新日期:1993-08-12 00:00:00

  • Ventral tegmental area GABA projections pause accumbal cholinergic interneurons to enhance associative learning.

    abstract::The ventral tegmental area (VTA) and nucleus accumbens (NAc) are essential for learning about environmental stimuli associated with motivationally relevant outcomes. The task of signalling such events, both rewarding and aversive, from the VTA to the NAc has largely been ascribed to dopamine neurons. The VTA also cont...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature11657

    authors: Brown MT,Tan KR,O'Connor EC,Nikonenko I,Muller D,Lüscher C

    更新日期:2012-12-20 00:00:00

  • Synaptic, transcriptional and chromatin genes disrupted in autism.

    abstract::The genetic architecture of autism spectrum disorder involves the interplay of common and rare variants and their impact on hundreds of genes. Using exome sequencing, here we show that analysis of rare coding variation in 3,871 autism cases and 9,937 ancestry-matched or parental controls implicates 22 autosomal genes ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13772

    authors: De Rubeis S,He X,Goldberg AP,Poultney CS,Samocha K,Cicek AE,Kou Y,Liu L,Fromer M,Walker S,Singh T,Klei L,Kosmicki J,Shih-Chen F,Aleksic B,Biscaldi M,Bolton PF,Brownfeld JM,Cai J,Campbell NG,Carracedo A,Chahrour

    更新日期:2014-11-13 00:00:00

  • Genes required for GABA function in Caenorhabditis elegans.

    abstract::gamma-Aminobutyric acid (GABA) neurotransmission is widespread in vertebrate and invertebrate nervous systems. Here we use a genetic approach to identify molecules specific to GABA function. On the basis of the known in vivo roles of GABAergic neurons in controlling behaviour of the nematode Caenorhabditis elegans, we...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/364334a0

    authors: McIntire SL,Jorgensen E,Horvitz HR

    更新日期:1993-07-22 00:00:00

  • Deep roots for mid-ocean-ridge volcanoes revealed by plagioclase-hosted melt inclusions.

    abstract::The global mid-ocean ridge system is the most extensive magmatic system on our planet and is the site of 75 per cent of Earth's volcanism1. The vertical extent of mid-ocean-ridge magmatic systems has been considered to be restricted: even at the ultraslow-spreading Gakkel mid-ocean ridge under the Arctic Ocean, where ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1448-0

    authors: Bennett EN,Jenner FE,Millet MA,Cashman KV,Lissenberg CJ

    更新日期:2019-08-01 00:00:00

  • Demonstration by monoclonal antibodies that carbohydrate structures of glycoproteins and glycolipids are onco-developmental antigens.

    abstract::The hope that hybridoma antibodies would reveal unique cell surface antigens during embryogenesis, differentiation and oncogenesis has been replaced by the realization that such antigens are mainly carbohydrate structures of glycoproteins and glycolipids occurring in many cell types. These findings either may reflect ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/314053a0

    authors: Feizi T

    更新日期:1985-03-07 00:00:00

  • Human herpesvirus KSHV encodes a constitutively active G-protein-coupled receptor linked to cell proliferation.

    abstract::Kaposi's sarcoma-associated herpesvirus (KSHV, also known as human herpesvirus 8, or HHV 8) is a virus that is consistently present in Kaposi's sarcoma and in primary-effusion (body-cavity-based) lymphomas, malignancies that occur frequently, but not exclusively, in AIDS patients. KSHV is a gamma herpesvirus with homo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/385347a0

    authors: Arvanitakis L,Geras-Raaka E,Varma A,Gershengorn MC,Cesarman E

    更新日期:1997-01-23 00:00:00

  • Late Tharsis formation and implications for early Mars.

    abstract::The Tharsis region is the largest volcanic complex on Mars and in the Solar System. Young lava flows cover its surface (from the Amazonian period, less than 3 billion years ago) but its growth started during the Noachian era (more than 3.7 billion years ago). Its position has induced a reorientation of the planet with...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature17171

    authors: Bouley S,Baratoux D,Matsuyama I,Forget F,Séjourné A,Turbet M,Costard F

    更新日期:2016-03-17 00:00:00

  • Vaccine protection against Zika virus from Brazil.

    abstract::Zika virus (ZIKV) is a flavivirus that is responsible for the current epidemic in Brazil and the Americas. ZIKV has been causally associated with fetal microcephaly, intrauterine growth restriction, and other birth defects in both humans and mice. The rapid development of a safe and effective ZIKV vaccine is a global ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature18952

    authors: Larocca RA,Abbink P,Peron JP,Zanotto PM,Iampietro MJ,Badamchi-Zadeh A,Boyd M,Ng'ang'a D,Kirilova M,Nityanandam R,Mercado NB,Li Z,Moseley ET,Bricault CA,Borducchi EN,Giglio PB,Jetton D,Neubauer G,Nkolola JP,Maxfield

    更新日期:2016-08-25 00:00:00

  • Ancient gene flow from early modern humans into Eastern Neanderthals.

    abstract::It has been shown that Neanderthals contributed genetically to modern humans outside Africa 47,000-65,000 years ago. Here we analyse the genomes of a Neanderthal and a Denisovan from the Altai Mountains in Siberia together with the sequences of chromosome 21 of two Neanderthals from Spain and Croatia. We find that a p...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature16544

    authors: Kuhlwilm M,Gronau I,Hubisz MJ,de Filippo C,Prado-Martinez J,Kircher M,Fu Q,Burbano HA,Lalueza-Fox C,de la Rasilla M,Rosas A,Rudan P,Brajkovic D,Kucan Ž,Gušic I,Marques-Bonet T,Andrés AM,Viola B,Pääbo S,Meyer M,Sie

    更新日期:2016-02-25 00:00:00

  • Interneuron cell types are fit to function.

    abstract::Understanding brain circuits begins with an appreciation of their component parts - the cells. Although GABAergic interneurons are a minority population within the brain, they are crucial for the control of inhibition. Determining the diversity of these interneurons has been a central goal of neurobiologists, but this...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature12983

    authors: Kepecs A,Fishell G

    更新日期:2014-01-16 00:00:00

  • Transforming binding affinities from three dimensions to two with application to cadherin clustering.

    abstract::Membrane-bound receptors often form large assemblies resulting from binding to soluble ligands, cell-surface molecules on other cells and extracellular matrix proteins. For example, the association of membrane proteins with proteins on different cells (trans-interactions) can drive the oligomerization of proteins on t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10183

    authors: Wu Y,Vendome J,Shapiro L,Ben-Shaul A,Honig B

    更新日期:2011-07-27 00:00:00