当前位置： SCI文献检索 > Nature Microbiology期刊下所有文献 > Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota.

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota.

Abstract：

:Phylogenetic and geological evidence supports the hypothesis that life on Earth originated in thermal environments and conserved energy through methanogenesis or sulfur reduction. Here we describe two populations of the deeply rooted archaeal phylum Korarchaeota, which were retrieved from the metagenome of a circumneutral, suboxic hot spring that contains high levels of sulfate, sulfide, methane, hydrogen and carbon dioxide. One population is closely related to 'Candidatus Korarchaeum cryptofilum OPF8', while the more abundant korarchaeote, 'Candidatus Methanodesulfokores washburnensis', contains genes that are necessary for anaerobic methane and dissimilatory sulfur metabolisms. Phylogenetic and ancestral reconstruction analyses suggest that methane metabolism originated in the Korarchaeota, whereas genes for dissimilatory sulfite reduction were horizontally transferred to the Korarchaeota from the Firmicutes. Interactions among enzymes involved in both metabolisms could facilitate exergonic, sulfite-dependent, anaerobic oxidation of methane to methanol; alternatively, 'Ca. M. washburnensis' could conduct methanogenesis and sulfur reduction independently. Metabolic reconstruction suggests that 'Ca. M. washburnensis' is a mixotroph, capable of amino acid uptake, assimilation of methane-derived carbon and/or CO2 fixation by archaeal type III-b RuBisCO for scavenging ribose carbon. Our findings link anaerobic methane metabolism and dissimilatory sulfur reduction within a single deeply rooted archaeal population and have implications for the evolution of these traits throughout the Archaea.

journal_name

Nat Microbiol

journal_title

Nature microbiology

authors

McKay LJ,Dlakić M,Fields MW,Delmont TO,Eren AM,Jay ZJ,Klingelsmith KB,Rusch DB,Inskeep WP

doi

10.1038/s41564-019-0362-4

subject

Has Abstract

pub_date

2019-04-01 00:00:00

pages

614-622

issue

4

issn

2058-5276

pii

10.1038/s41564-019-0362-4

journal_volume

4

pub_type

杂志文章

相关文献

Nature Microbiology文献大全
  • Structure-function analysis of neutralizing antibodies to H7N9 influenza from naturally infected humans.

    abstract：:Little is known about the specificities and neutralization breadth of the H7-reactive antibody repertoire induced by natural H7N9 infection in humans. We have isolated and characterized 73 H7-reactive monoclonal antibodies from peripheral B cells from four donors infected in 2013 and 2014. Of these, 45 antibodies were...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0303-7

    authors： Huang KA,Rijal P,Jiang H,Wang B,Schimanski L,Dong T,Liu YM,Chang P,Iqbal M,Wang MC,Chen Z,Song R,Huang CC,Yang JH,Qi J,Lin TY,Li A,Powell TJ,Jan JT,Ma C,Gao GF,Shi Y,Townsend AR

    更新日期：2019-02-01 00:00:00

  • Spermine-mediated tight sealing of the Magnaporthe oryzae appressorial pore-rice leaf surface interface.

    abstract：:Cellular adhesion mediates many important plant-microbe interactions. In the devastating blast fungus Magnaporthe oryzae1, powerful glycoprotein-rich mucilage adhesives2 cement melanized and pressurized dome-shaped infection cells-appressoria-to host rice leaf surfaces. Enormous internal turgor pressure is directed on...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-020-0786-x

    authors： Rocha RO,Elowsky C,Pham NTT,Wilson RA

    更新日期：2020-12-01 00:00:00

  • Mini viral RNAs act as innate immune agonists during influenza virus infection.

    abstract：:The molecular processes that determine the outcome of influenza virus infection in humans are multifactorial and involve a complex interplay between host, viral and bacterial factors1. However, it is generally accepted that a strong innate immune dysregulation known as 'cytokine storm' contributes to the pathology of ...

    journal_title：Nature microbiology

    pub_type： 信件

    doi：10.1038/s41564-018-0240-5

    authors： Te Velthuis AJW,Long JC,Bauer DLV,Fan RLY,Yen HL,Sharps J,Siegers JY,Killip MJ,French H,Oliva-Martín MJ,Randall RE,de Wit E,van Riel D,Poon LLM,Fodor E

    更新日期：2018-11-01 00:00:00

  • CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.

    abstract：:It is generally believed that exchange of secondary metabolite biosynthetic gene clusters (BGCs) among closely related bacteria is an important driver of BGC evolution and diversification. Applying this idea may help researchers efficiently connect many BGCs to their products and characterize the products' roles in va...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-019-0573-8

    authors： Wang G,Zhao Z,Ke J,Engel Y,Shi YM,Robinson D,Bingol K,Zhang Z,Bowen B,Louie K,Wang B,Evans R,Miyamoto Y,Cheng K,Kosina S,De Raad M,Silva L,Luhrs A,Lubbe A,Hoyt DW,Francavilla C,Otani H,Deutsch S,Washton NM,

    更新日期：2019-12-01 00:00:00

  • Erratum: Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.

    abstract：:This corrects the article DOI: 10.1038/nmicrobiol.2016.155. ...

    journal_title：Nature microbiology

    pub_type： 已发布勘误

    doi：10.1038/nmicrobiol.2017.107

    authors： Buffalo CZ,Bahn-Suh AJ,Hirakis SP,Biswas T,Amaro RE,Nizet V,Ghosh P

    更新日期：2017-06-12 00:00:00

  • Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

    abstract：:Although bacteria within the Verrucomicrobia phylum are pervasive in soils around the world, they are under-represented in both isolate collections and genomic databases. Here, we describe a single verrucomicrobial group within the class Spartobacteria that is not closely related to any previously described taxa. We e...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2016.198

    authors： Brewer TE,Handley KM,Carini P,Gilbert JA,Fierer N

    更新日期：2016-10-31 00:00:00

  • Tagging the type VI secretion system.

    abstract：: ...

    journal_title：Nature microbiology

    pub_type： 评论,杂志文章

    doi：10.1038/s41564-018-0277-5

    authors： Francetic O

    更新日期：2018-11-01 00:00:00

  • Author Correction: Structures of the stator complex that drives rotation of the bacterial flagellum.

    abstract：:An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title：Nature microbiology

    pub_type： 已发布勘误

    doi：10.1038/s41564-020-00825-4

    authors： Deme JC,Johnson S,Vickery O,Aron A,Monkhouse H,Griffiths T,James RH,Berks BC,Coulton JW,Stansfeld PJ,Lea SM

    更新日期：2020-12-01 00:00:00

  • Broad-spectrum anti-CRISPR proteins facilitate horizontal gene transfer.

    abstract：:CRISPR-Cas adaptive immune systems protect bacteria and archaea against their invading genetic parasites, including bacteriophages/viruses and plasmids. In response to this immunity, many phages have anti-CRISPR (Acr) proteins that inhibit CRISPR-Cas targeting. To date, anti-CRISPR genes have primarily been discovered...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-020-0692-2

    authors： Mahendra C,Christie KA,Osuna BA,Pinilla-Redondo R,Kleinstiver BP,Bondy-Denomy J

    更新日期：2020-04-01 00:00:00

  • Dimethylsulfoniopropionate biosynthesis in marine bacteria and identification of the key gene in this process.

    abstract：:Dimethylsulfoniopropionate (DMSP) is one of the Earth's most abundant organosulfur molecules, a signalling molecule1, a key nutrient for marine microorganisms2,3 and the major precursor for gaseous dimethyl sulfide (DMS). DMS, another infochemical in signalling pathways4, is important in global sulfur cycling2 and aff...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2017.9

    authors： Curson AR,Liu J,Bermejo Martínez A,Green RT,Chan Y,Carrión O,Williams BT,Zhang SH,Yang GP,Bulman Page PC,Zhang XH,Todd JD

    更新日期：2017-02-13 00:00:00

  • Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.

    abstract：:Primary sclerosing cholangitis (PSC) is a chronic inflammatory liver disease and its frequent complication with ulcerative colitis highlights the pathogenic role of epithelial barrier dysfunction. Intestinal barrier dysfunction has been implicated in the pathogenesis of PSC, yet its underlying mechanism remains unknow...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0333-1

    authors： Nakamoto N,Sasaki N,Aoki R,Miyamoto K,Suda W,Teratani T,Suzuki T,Koda Y,Chu PS,Taniki N,Yamaguchi A,Kanamori M,Kamada N,Hattori M,Ashida H,Sakamoto M,Atarashi K,Narushima S,Yoshimura A,Honda K,Sato T,Kanai T

    更新日期：2019-03-01 00:00:00

  • Multi-virion infectious units arise from free viral particles in an enveloped virus.

    abstract：:Many animal viruses are enveloped in a lipid bilayer taken up from cellular membranes. Because viral surface proteins bind to these membranes to initiate infection, we hypothesized that free virions may also be capable of interacting with the envelopes of other virions extracellularly. Here, we demonstrate this hypoth...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2017.78

    authors： Cuevas JM,Durán-Moreno M,Sanjuán R

    更新日期：2017-05-22 00:00:00

  • Phosphatidic acid governs natural egress in Toxoplasma gondii via a guanylate cyclase receptor platform.

    abstract：:Toxoplasma gondii establishes a lifelong chronic infection in humans and animals1. Host cell entry and egress are key steps in the lytic cycle of this obligate intracellular parasite, ensuring its survival and dissemination. Egress is temporally orchestrated, underpinned by the exocytosis of secretory organelles calle...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0339-8

    authors： Bisio H,Lunghi M,Brochet M,Soldati-Favre D

    更新日期：2019-03-01 00:00:00

  • Longevity of major coenzymes allows minimal de novo synthesis in microorganisms.

    abstract：:Coenzymes are vital for cellular metabolism and act on the full spectrum of enzymatic reactions. Intrinsic chemical reactivity, enzyme promiscuity and high flux through their catalytic cycles make coenzymes prone to damage. To counteract such compromising factors and ensure stable levels of functional coenzymes, cells...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2017.73

    authors： Hartl J,Kiefer P,Meyer F,Vorholt JA

    更新日期：2017-05-15 00:00:00

  • Author Correction: Reactive oxygen species induce antibiotic tolerance during systemic Staphylococcus aureus infection.

    abstract：:An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title：Nature microbiology

    pub_type： 已发布勘误

    doi：10.1038/s41564-020-0679-z

    authors： Rowe SE,Wagner NJ,Li L,Beam JE,Wilkinson AD,Radlinski LC,Zhang Q,Miao EA,Conlon BP

    更新日期：2020-03-01 00:00:00

  • A humanized MDCK cell line for the efficient isolation and propagation of human influenza viruses.

    abstract：:Here, we developed hCK, a Madin-Darby canine kidney (MDCK) cell line that expresses high levels of human influenza virus receptors and low levels of avian virus receptors. hCK cells supported human A/H3N2 influenza virus isolation and growth much more effectively than conventional MDCK or human virus receptor-overexpr...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-019-0433-6

    authors： Takada K,Kawakami C,Fan S,Chiba S,Zhong G,Gu C,Shimizu K,Takasaki S,Sakai-Tagawa Y,Lopes TJS,Dutta J,Khan Z,Kriti D,van Bakel H,Yamada S,Watanabe T,Imai M,Kawaoka Y

    更新日期：2019-08-01 00:00:00

  • SspABCD-SspE is a phosphorothioation-sensing bacterial defence system with broad anti-phage activities.

    abstract：:Bacteria have evolved diverse mechanisms to fend off predation by bacteriophages. We previously identified the Dnd system, which uses DndABCDE to insert sulfur into the DNA backbone as a double-stranded phosphorothioate (PT) modification, and DndFGH, a restriction component. Here, we describe an unusual SspABCD-SspE P...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-020-0700-6

    authors： Xiong X,Wu G,Wei Y,Liu L,Zhang Y,Su R,Jiang X,Li M,Gao H,Tian X,Zhang Y,Hu L,Chen S,Tang Y,Jiang S,Huang R,Li Z,Wang Y,Deng Z,Wang J,Dedon PC,Chen S,Wang L

    更新日期：2020-07-01 00:00:00

  • Influenza virus mRNA trafficking through host nuclear speckles.

    abstract：:Influenza A virus is a human pathogen with a genome composed of eight viral RNA segments that replicate in the nucleus. Two viral mRNAs are alternatively spliced. The unspliced M1 mRNA is translated into the matrix M1 protein, while the ion channel M2 protein is generated after alternative splicing. These proteins are...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2016.69

    authors： Mor A,White A,Zhang K,Thompson M,Esparza M,Muñoz-Moreno R,Koide K,Lynch KW,García-Sastre A,Fontoura BM

    更新日期：2016-05-27 00:00:00

  • ADP-ribosyltransferase PARP11 modulates the interferon antiviral response by mono-ADP-ribosylating the ubiquitin E3 ligase β-TrCP.

    abstract：:Outbreaks of viral infections are a global health burden. Although type I interferon (IFN-I) exerts broad-spectrum antiviral effects, its antiviral efficacy in host cells is largely restricted by viruses. How the antiviral efficacy of IFN-I can be improved remains to be explored. Here, we identified the ADP-ribosyltra...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-019-0428-3

    authors： Guo T,Zuo Y,Qian L,Liu J,Yuan Y,Xu K,Miao Y,Feng Q,Chen X,Jin L,Zhang L,Dong C,Xiong S,Zheng H

    更新日期：2019-11-01 00:00:00

  • Chance and pleiotropy dominate genetic diversity in complex bacterial environments.

    abstract：:How does environmental complexity affect the evolution of single genes? Here, we measured the effects of a set of Bacillus subtilis glutamate dehydrogenase mutants across 19 different environments-from phenotypically homogeneous single-cell populations in liquid media to heterogeneous biofilms, plant roots and soil po...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-019-0412-y

    authors： Noda-García L,Davidi D,Korenblum E,Elazar A,Putintseva E,Aharoni A,Tawfik DS

    更新日期：2019-07-01 00:00:00

  • AXL promotes Zika virus infection in astrocytes by antagonizing type I interferon signalling.

    abstract：:Zika virus (ZIKV) is associated with neonatal microcephaly and Guillain-Barré syndrome1,2. While progress has been made in understanding the causal link between ZIKV infection and microcephaly3-9, the life cycle and pathogenesis of ZIKV are less well understood. In particular, there are conflicting reports on the role...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-017-0092-4

    authors： Chen J,Yang YF,Yang Y,Zou P,Chen J,He Y,Shui SL,Cui YR,Bai R,Liang YJ,Hu Y,Jiang B,Lu L,Zhang X,Liu J,Xu J

    更新日期：2018-03-01 00:00:00

  • Exploitation of the Leishmania exosomal pathway by Leishmania RNA virus 1.

    abstract：:Leishmania are ancient eukaryotes that have retained the exosome pathway through evolution. Leishmania RNA virus 1 (LRV1)-infected Leishmania species are associated with a particularly aggressive mucocutaneous disease triggered in response to the double-stranded RNA (dsRNA) virus. However, it is unclear how LRV1 is ex...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0352-y

    authors： Atayde VD,da Silva Lira Filho A,Chaparro V,Zimmermann A,Martel C,Jaramillo M,Olivier M

    更新日期：2019-04-01 00:00:00

  • Specific inhibition of NLRP3 in chikungunya disease reveals a role for inflammasomes in alphavirus-induced inflammation.

    abstract：:Mosquito-borne viruses can cause severe inflammatory diseases and there are limited therapeutic solutions targeted specifically at virus-induced inflammation. Chikungunya virus (CHIKV), a re-emerging alphavirus responsible for several outbreaks worldwide in the past decade, causes debilitating joint inflammation and s...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-017-0015-4

    authors： Chen W,Foo SS,Zaid A,Teng TS,Herrero LJ,Wolf S,Tharmarajah K,Vu LD,van Vreden C,Taylor A,Freitas JR,Li RW,Woodruff TM,Gordon R,Ojcius DM,Nakaya HI,Kanneganti TD,O'Neill LAJ,Robertson AAB,King NJ,Suhrbier A,Coope

    更新日期：2017-10-01 00:00:00

  • Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.

    abstract：:Viruses and plasmids (invasive mobile genetic elements (iMGEs)) have important roles in shaping microbial communities, but their dynamic interactions with CRISPR-based immunity remain unresolved. We analysed generation-resolved iMGE-host dynamics spanning one and a half years in a microbial consortium from a biologica...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-020-00794-8

    authors： Martínez Arbas S,Narayanasamy S,Herold M,Lebrun LA,Hoopmann MR,Li S,Lam TJ,Kunath BJ,Hicks ND,Liu CM,Price LB,Laczny CC,Gillece JD,Schupp JM,Keim PS,Moritz RL,Faust K,Tang H,Ye Y,Skupin A,May P,Muller EEL,Wilm

    更新日期：2021-01-01 00:00:00

  • Insect symbiotic bacteria harbour viral pathogens for transovarial transmission.

    abstract：:Many insects, including mosquitoes, planthoppers, aphids and leafhoppers, are the hosts of bacterial symbionts and the vectors for transmitting viral pathogens1-3. In general, symbiotic bacteria can indirectly affect viral transmission by enhancing immunity and resistance to viruses in insects3-5. Whether symbiotic ba...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2017.25

    authors： Jia D,Mao Q,Chen Y,Liu Y,Chen Q,Wu W,Zhang X,Chen H,Li Y,Wei T

    更新日期：2017-03-06 00:00:00

  • Professional titles matter.

    abstract：: ...

    journal_title：Nature microbiology

    pub_type： 社论

    doi：10.1038/s41564-018-0320-6

    authors：

    更新日期：2018-12-01 00:00:00

  • Primate immunodeficiency virus proteins Vpx and Vpr counteract transcriptional repression of proviruses by the HUSH complex.

    abstract：:Host factors that silence provirus transcription in CD4+ memory T cells help HIV-1 escape eradication by the host immune system and by antiviral drugs1. These same factors, however, must be overcome for HIV-1 to propagate. Here we show that Vpx and Vpr encoded by diverse primate immunodeficiency viruses activate provi...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0256-x

    authors： Yurkovetskiy L,Guney MH,Kim K,Goh SL,McCauley S,Dauphin A,Diehl WE,Luban J

    更新日期：2018-12-01 00:00:00

  • Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes.

    abstract：:Surface ocean waters are dominated by planktonic bacterial lineages with highly reduced genomes. The best examples are the cyanobacterial genus Prochlorococcus, the alphaproteobacterial clade SAR11 and the gammaproteobacterial clade SAR86, which together represent over 50% of the cells in surface oceans. Several studi...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/nmicrobiol.2017.91

    authors： Luo H,Huang Y,Stepanauskas R,Tang J

    更新日期：2017-06-12 00:00:00

  • The impact of antimicrobials on gonococcal evolution.

    abstract：:The sexually transmitted pathogen Neisseria gonorrhoeae is regarded as being on the way to becoming an untreatable superbug. Despite its clinical importance, little is known about its emergence and evolution, and how this corresponds with the introduction of antimicrobials. We present a genome-based phylogeographical ...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-019-0501-y

    authors： Sánchez-Busó L,Golparian D,Corander J,Grad YH,Ohnishi M,Flemming R,Parkhill J,Bentley SD,Unemo M,Harris SR

    更新日期：2019-11-01 00:00:00

  • Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis.

    abstract：:Staphylococcus epidermidis is a conspicuous member of the human microbiome, widely present on healthy skin. Here we show that S. epidermidis has also evolved to become a formidable nosocomial pathogen. Using genomics, we reveal that three multidrug-resistant, hospital-adapted lineages of S. epidermidis (two ST2 and on...

    journal_title：Nature microbiology

    pub_type： 杂志文章

    doi：10.1038/s41564-018-0230-7

    authors： Lee JYH,Monk IR,Gonçalves da Silva A,Seemann T,Chua KYL,Kearns A,Hill R,Woodford N,Bartels MD,Strommenger B,Laurent F,Dodémont M,Deplano A,Patel R,Larsen AR,Korman TM,Stinear TP,Howden BP

    更新日期：2018-10-01 00:00:00