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Assessing taxonomic metagenome profilers with OPAL.

Abstract：

:The explosive growth in taxonomic metagenome profiling methods over the past years has created a need for systematic comparisons using relevant performance criteria. The Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, including those of the first challenge of the initiative for the Critical Assessment of Metagenome Interpretation (CAMI), together with convenient visualizations. In addition, we perform in-depth performance comparisons with seven profilers on datasets of CAMI and the Human Microbiome Project. OPAL is freely available at https://github.com/CAMI-challenge/OPAL .

journal_name

Genome Biol

journal_title

Genome biology

authors

Meyer F,Bremges A,Belmann P,Janssen S,McHardy AC,Koslicki D

doi

10.1186/s13059-019-1646-y

subject

Has Abstract

pub_date

2019-03-04 00:00:00

pages

51

issue

1

eissn

1474-7596

issn

1474-760X

pii

10.1186/s13059-019-1646-y

journal_volume

20

pub_type

杂志文章

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