Novel 2,4-disubstituted quinazolines as cytotoxic agents and JAK2 inhibitors: Synthesis, in vitro evaluation and molecular dynamics studies.

Abstract:

:Recent studies reported the involvement of JAK2/STAT3 pathway in various solid tumours including breast, ovarian, prostate and lung cancers. Clinical literature also reported the lowered burden in breast and ovarian cancers by targeting JAK2 pathway. In this study, a series of novel 2,4-disubstituted quinazolines (2a-2 j and 3a-3 j) were synthesized and were evaluated for their cytotoxicity against human breast cancer (MDA-MB-231) and ovarian cancer (SK-O-V3) cell lines using MTT assay. Moderate to good in vitro cytotoxic potentials of the newly synthesized molecules were reported against selected human cancer cell lines. Among the tested molecules, compound 3b has shown better cytotoxic activity against MD-MB-231 (10.1 ± 0.51 μM). in vitro JAK2 inhibition assay elucidated the mechanistic profile of the derivatives with moderate percentage of inhibition. Compounds 3b and 3d were reported with 35.4% and 34.2% inhibition of JAK2 protein. SAR studies suggest that the larger hydrophobic aromatic nucleus with hydrophilic linkage could probably increase the cytotoxic and JAK2 potentials and hydroxyl or nitro substitution could be more beneficial. Molecular dynamics simulation studies with JAK2-3b, and JAK2-3d complexes elucidated the conformational changes. With the reported bioactivities of these derivatives, further studies on the derivatization could elucidate the broader cytotoxic potentials.

journal_name

Comput Biol Chem

authors

Jyothi Buggana S,Paturi MC,Perka H,Gade DR,Vvs RP

doi

10.1016/j.compbiolchem.2019.01.008

subject

Has Abstract

pub_date

2019-04-01 00:00:00

pages

110-118

eissn

1476-9271

issn

1476-928X

pii

S1476-9271(18)30720-5

journal_volume

79

pub_type

杂志文章
  • GADS software for parametric linkage analysis of quantitative traits distributed as a point-mass mixture.

    abstract::Often the quantitative data coming from proteomics and metabolomics studies have irregular distribution with a spike. None of the wide used methods for human QTL mapping are applicable to such traits. Researchers have to reduce the sample, excluding the spike, and analyze only continuous measurements. In this study, w...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2011.11.004

    authors: Axenovich TI,Zorkoltseva IV

    更新日期:2012-02-01 00:00:00

  • Drug-target network and polypharmacology studies of a Traditional Chinese Medicine for type II diabetes mellitus.

    abstract::Many Traditional Chinese Medicines (TCMs) are effective to relieve complicated diseases such as type II diabetes mellitus (T2DM). In this work, molecular docking and network analysis were employed to elucidate the action mechanism of a medical composition which had clinical efficacy for T2DM. We found that multiple ac...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2011.07.003

    authors: Gu J,Zhang H,Chen L,Xu S,Yuan G,Xu X

    更新日期:2011-10-12 00:00:00

  • AROHap: An effective algorithm for single individual haplotype reconstruction based on asexual reproduction optimization.

    abstract::In this paper, a method for single individual haplotype (SIH) reconstruction using Asexual reproduction optimization (ARO) is proposed. Haplotypes, as a set of genetic variations in each chromosome, contain vital information such as the relationship between human genome and diseases. Finding haplotypes in diploid orga...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2017.12.005

    authors: Olyaee MH,Khanteymoori A

    更新日期:2018-02-01 00:00:00

  • Putative dual inhibitors of Janus kinase 1 and 3 (JAK1/3): Pharmacophore based hierarchical virtual screening.

    abstract::Janus kinase 1 and 3 are non-receptor protein tyrosine kinases, involved in the regulation of various cytokines implicated in the pathogenesis of autoimmune and inflammatory disease conditions. Thus, they serve as therapeutic targets for the designing of multi-targeted agents for the treatment of inflammatory-mediated...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.07.009

    authors: Jasuja H,Chadha N,Singh PK,Kaur M,Bahia MS,Silakari O

    更新日期:2018-10-01 00:00:00

  • MATEPRED-A-SVM-Based Prediction Method for Multidrug And Toxin Extrusion (MATE) Proteins.

    abstract::The growth and spread of drug resistance in bacteria have been well established in both mankind and beasts and thus is a serious public health concern. Due to the increasing problem of drug resistance, control of infectious diseases like diarrhea, pneumonia etc. is becoming more difficult. Hence, it is crucial to unde...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2015.07.011

    authors: Tamanna,Ramana J

    更新日期:2015-10-01 00:00:00

  • In silico identification of novel IL-1β inhibitors to target protein-protein interfaces.

    abstract::Interleukin-1β is a drug target in rheumatoid arthritis and several auto-immune disorders. In this study, a set of 48 compounds with the determined IC50 values were used for QSAR analysis by MOE. The QSAR model was developed by using training set of 41 compounds, based on 12 unique descriptors. Model was validated by ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2015.06.004

    authors: Halim SA,Jawad M,Ilyas M,Mir Z,Mirza AA,Husnain T

    更新日期:2015-10-01 00:00:00

  • Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.

    abstract::G protein-coupled receptors (GPCRs), a large eukaryotic protein family, have proved difficult to comprehensively detect and functionally identify by homology searches and domain detection, because they are highly divergent and their sequences share strikingly little similarity. Transmembrane (TM) topology pattern anal...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2003.11.003

    authors: Inoue Y,Ikeda M,Shimizu T

    更新日期:2004-02-01 00:00:00

  • Ab-initio prediction and reliability of protein structural genomics by PROPAINOR algorithm.

    abstract::We have formulated the ab-initio prediction of the 3D-structure of proteins as a probabilistic programming problem where the inter-residue 3D-distances are treated as random variables. Lower and upper bounds for these random variables and the corresponding probabilities are estimated by nonparametric statistical metho...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/s0097-8485(02)00074-8

    authors: Joshi RR,Jyothi S

    更新日期:2003-07-01 00:00:00

  • Multilocus consensus genetic maps (MCGM): formulation, algorithms, and results.

    abstract::In process of creating genetic maps different labs/research groups obtain overlapping parts of the map. Merging these parts into one integrative map is based on looking for maximum shared marker orders among the maps. Really, not all shared markers of such maps have consensus order that obstructs building of the integ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2005.09.007

    authors: Mester DI,Ronin YI,Korostishevsky MA,Pikus VL,Glazman AE,Korol AB

    更新日期:2006-02-01 00:00:00

  • Reprint of "Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction".

    abstract::With advances in genomics, transcriptomics, metabolomics and proteomics, and more expansive electronic clinical record monitoring, as well as advances in computation, we have entered the Big Data era in biomedical research. Data gathering is growing rapidly while only a small fraction of this data is converted to usef...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章,评审

    doi:10.1016/j.compbiolchem.2015.08.005

    authors: Rouillard AD,Wang Z,Ma'ayan A

    更新日期:2015-12-01 00:00:00

  • The anesthetic action of some polyhalogenated ethers-Monte Carlo method based QSAR study.

    abstract::Up to this date, there has been an ongoing debate about the mode of action of general anesthetics, which have postulated many biological sites as targets for their action. However, postoperative nausea and vomiting are common problems in which inhalational agents may have a role in their development. When a mode of ac...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.04.009

    authors: Golubović M,Lazarević M,Zlatanović D,Krtinić D,Stoičkov V,Mladenović B,Milić DJ,Sokolović D,Veselinović AM

    更新日期:2018-08-01 00:00:00

  • Molecular dynamics-assisted pharmacophore modeling of caspase-3-isatin sulfonamide complex: Recognizing essential intermolecular contacts and features of sulfonamide inhibitor class for caspase-3 binding.

    abstract::The identification of isatin sulfonamide as a potent small molecule inhibitor of caspase-3 had fuelled the synthesis and characterization of the numerous sulfonamide class of inhibitors to optimize for potency. Recent works that relied on the ligand-based approaches have successfully shown the regions of optimizations...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2017.08.006

    authors: Kumar SP,Patel CN,Jha PC,Pandya HA

    更新日期:2017-12-01 00:00:00

  • Mutually exclusive binding of APPL(PH) to BAR domain and Reptin regulates β-catenin dependent transcriptional events.

    abstract::Reptin functions in a wide range of biological processes including chromatin remodelling, nucleolar organization and transcriptional regulation of WNT signalling. As β-catenin dependent transcriptional repression and activation events involve binding of Reptin and histone deacetylase 1 to APPL endocytic proteins, this...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2013.05.005

    authors: Rashid S,Parveen Z,Ferdous S,Bibi N

    更新日期:2013-12-01 00:00:00

  • DFT and QTAIM based investigation on the structure and antioxidant behavior of lichen substances Atranorin, Evernic acid and Diffractaic acid.

    abstract::In this study, the structural and antioxidant behavior of the three lichen-derived natural compounds such as atranorin (AT), evernic acid (EV) and diffractaic acid (DF) has been investigated in the gas and water phase using both B3LYP and M06-2X functional level of density functional theory (DFT) with two different ba...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2019.03.009

    authors: Shameera Ahamed TK,Rajan VK,Sabira K,Muraleedharan K

    更新日期:2019-06-01 00:00:00

  • Interactions of 2-phenyl-benzotriazole xenobiotic compounds with human Cytochrome P450-CYP1A1 by means of docking, molecular dynamics simulations and MM-GBSA calculations.

    abstract::2-phenyl-benzotriazole xenobiotic compounds (PBTA-4, PBTA-6, PBTA-7 and PBTA-8) that were previously isolated and identified in waters of the Yodo river, in Japan (Nukaya et al., 2001; Ohe et al., 2004; Watanabe et al., 2001) were characterized as powerful pro-mutagens. In order to predict the activation mechanism of ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.04.004

    authors: Mena-Ulecia K,MacLeod-Carey D

    更新日期:2018-06-01 00:00:00

  • Identification of Casiopeina II-gly secondary targets through a systems pharmacology approach.

    abstract::Casiopeinas are a group of copper-based compounds designed to be used as less toxic, more efficient chemotherapeutic agents. In this study, we analyzed the in vitro effects of Casiopeina II-gly on the expression of canonical biological pathways. Using microarray data from HeLa cell lines treated with Casiopeina II-gly...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.11.021

    authors: de Anda-Jáuregui G,Espinal-Enríquez J,Hur J,Alcalá-Corona SA,Ruiz-Azuara L,Hernández-Lemus E

    更新日期:2019-02-01 00:00:00

  • Potential protein biomarkers for systemic lupus erythematosus determined by bioinformatics analysis.

    abstract::Systemic lupus erythematosus (SLE) is a heterogeneous autoimmune disorder, and its pathogenesis in males and in cases without accompanying lupus nephritis (LN-) is not fully understood. In this study, we identified 90 (82 up- and 8 downregulated) differentially expressed genes (DEGs) common to female LN-, female LN+ a...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2019.107135

    authors: Kong J,Li L,Zhimin L,Yan J,Ji D,Chen Y,Yuanyuan W,Chen X,Shao H,Wang J,Da Z

    更新日期:2019-12-01 00:00:00

  • Stable feature selection for biomarker discovery.

    abstract::Feature selection techniques have been used as the workhorse in biomarker discovery applications for a long time. Surprisingly, the stability of feature selection with respect to sampling variations has long been under-considered. It is only until recently that this issue has received more and more attention. In this ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章,评审

    doi:10.1016/j.compbiolchem.2010.07.002

    authors: He Z,Yu W

    更新日期:2010-08-01 00:00:00

  • A Computational workflow for the identification of the potent inhibitor of type II secretion system traffic ATPase of Pseudomonas aeruginosa.

    abstract::Bacterial type II secretion system has now become an attractive target for antivirulence drug development. The aim of the present study was to characterize the binding site of the type II secretion system traffic ATPase GspER of Pseudomonas aeruginosa, and identify potent inhibitors using extensive computational and v...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.07.012

    authors: Arifuzzaman M,Mitra S,Jahan SI,Jakaria M,Abeda T,Absar N,Dash R

    更新日期:2018-10-01 00:00:00

  • Markovian encoding models in human splice site recognition using SVM.

    abstract::Splice site recognition is among the most significant and challenging tasks in bioinformatics due to its key role in gene annotation. Effective prediction of splice site requires nucleotide encoding methods that reveal the characteristics of DNA sequences to provide appropriate features to serve as input of machine le...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.02.005

    authors: Pashaei E,Aydin N

    更新日期:2018-04-01 00:00:00

  • Protein kinase inhibitors' classification using K-Nearest neighbor algorithm.

    abstract::Protein kinases are enzymes acting as a source of phosphate through ATP to regulate protein biological activities by phosphorylating groups of specific amino acids. For that reason, inhibiting protein kinases with an active small molecule plays a significant role in cancer treatment. To achieve this aim, computational...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2020.107269

    authors: Arian R,Hariri A,Mehridehnavi A,Fassihi A,Ghasemi F

    更新日期:2020-06-01 00:00:00

  • Identification and characterization of differentially expressed genes in Type 2 Diabetes using in silico approach.

    abstract::Diabetes mellitus is clinically characterized by hyperglycemia. Though many studies have been done to understand the mechanism of Type 2 Diabetes (T2D), however, the complete network of diabetes and its associated disorders through polygenic involvement is still under debate. The present study designed to re-analyze p...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2019.01.010

    authors: Gupta MK,Vadde R

    更新日期:2019-04-01 00:00:00

  • QSAR classification-based virtual screening followed by molecular docking studies for identification of potential inhibitors of 5-lipoxygenase.

    abstract::Developments of novel inhibitors to prevent the function of 5-lipoxygenase (5-LOX) proteins that are responsible for a variety of inflammatory and allergic disease are a major challenge in the scientific community. In this study, robust QSAR classification models for predicting 5-LOX activity were developed using mach...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2018.10.002

    authors: Shameera Ahamed TK,Rajan VK,Sabira K,Muraleedharan K

    更新日期:2018-12-01 00:00:00

  • Biocomputational identification and validation of novel microRNAs predicted from bubaline whole genome shotgun sequences.

    abstract::MicroRNAs (miRNAs) are small (19-25 base long), non-coding RNAs that regulate post-transcriptional gene expression by cleaving targeted mRNAs in several eukaryotes. The miRNAs play vital roles in multiple biological and metabolic processes, including developmental timing, signal transduction, cell maintenance and diff...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2017.08.005

    authors: Manku HK,Dhanoa JK,Kaur S,Arora JS,Mukhopadhyay CS

    更新日期:2017-10-01 00:00:00

  • NSAMD: A new approach to discover structured contiguous substrings in sequence datasets using Next-Symbol-Array.

    abstract::In many sequence data mining applications, the goal is to find frequent substrings. Some of these applications like extracting motifs in protein and DNA sequences are looking for frequently occurring approximate contiguous substrings called simple motifs. By approximate we mean that some mismatches are allowed during ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2016.09.001

    authors: Pari A,Baraani A,Parseh S

    更新日期:2016-10-01 00:00:00

  • Analysis of the NCI-60 dataset for cancer-related microRNA and mRNA using expression profiles.

    abstract:BACKGROUND:Recent studies have indicated that microRNA (miRNA) may play an oncogenic or tumor suppressor role in human cancer. To study the regulatory role of miRNAs in tumorigenesis, an integrated platform has been set up to provide a user friendly interface for query. The main advantage of the present platform is tha...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2013.02.001

    authors: Weng CW,Lee SC,Lee YL,Ng KL

    更新日期:2013-06-01 00:00:00

  • Comprehensive comparison of two protein family of P-ATPases (13A1 and 13A3) in insects.

    abstract::The P-type ATPases (P-ATPases) are present in all living cells where they mediate ion transport across membranes on the expense of ATP hydrolysis. Different ions which are transported by these pumps are protons like calcium, sodium, potassium, and heavy metals such as manganese, iron, copper, and zinc. Maintenance of ...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2017.04.006

    authors: Seddigh S

    更新日期:2017-06-01 00:00:00

  • CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density.

    abstract::Detection of protein complexes is very important to understand the principles of cellular organization and function. Recently, large protein-protein interactions (PPIs) networks have become available using high-throughput experimental techniques. These networks make it possible to develop computational methods for pro...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2015.07.012

    authors: Lakizadeh A,Jalili S,Marashi SA

    更新日期:2015-10-01 00:00:00

  • Hybrid docking-QSAR studies of DPP-IV inhibition activities of a series of aminomethyl-piperidones.

    abstract::In this study, the dipeptidyl peptidase-IV (DPP-IV) inhibition activities of a series of novel aminomethyl-piperidones were investigated by molecular docking studies and modeled by quantitative structure-activity relationship (QSAR) methodology. Molecular docking studies were used to find the best conformations of the...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2016.08.003

    authors: Amini Z,Fatemi MH,Gharaghani S

    更新日期:2016-10-01 00:00:00

  • Genome-wide identification and expression analysis of SWI1 genes in Boechera species.

    abstract::As a mode of reproduction in plants, apomixis leads to the generation of clones via seeds. Apomictic plants form viable diploid female gametes without meiosis (apomeiosis) and produce embryos without fertilization (parthenogenesis). Apomeiosis, as a major component of apomixis, has recently been reported in some Arabi...

    journal_title:Computational biology and chemistry

    pub_type: 杂志文章

    doi:10.1016/j.compbiolchem.2016.04.004

    authors: Sezer F,Yüzbaşioğlu G,Özbilen A,Taşkin KM

    更新日期:2016-06-01 00:00:00