Identification of recurrent fusion genes across multiple cancer types.

Abstract:

:Chromosome changes are one of the hallmarks of human malignancies. Chromosomal rearrangement is frequent in human cancers. One of the consequences of chromosomal rearrangement is gene fusions in the cancer genome. We have previously identified a panel of fusion genes in aggressive prostate cancers. In this study, we showed that 6 of these fusion genes are present in 7 different types of human malignancies with variable frequencies. Among them, the CCNH-C5orf30 and TRMT11-GRIK2 gene fusions were found in breast cancer, colon cancer, non-small cell lung cancer, esophageal adenocarcinoma, glioblastoma multiforme, ovarian cancer and liver cancer, with frequencies ranging from 12.9% to 85%. In contrast, four other gene fusions (mTOR-TP53BP1, TMEM135-CCDC67, KDM4-AC011523.2 and LRRC59-FLJ60017) are less frequent. Both TRMT11-GRIK2 and CCNH-C5orf30 are also frequently present in lymph node metastatic cancer samples from the breast, colon and ovary. Thus, detecting these fusion transcripts may have significant biological and clinical implications in cancer patient management.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Yu YP,Liu P,Nelson J,Hamilton RL,Bhargava R,Michalopoulos G,Chen Q,Zhang J,Ma D,Pennathur A,Luketich J,Nalesnik M,Tseng G,Luo JH

doi

10.1038/s41598-019-38550-6

subject

Has Abstract

pub_date

2019-01-31 00:00:00

pages

1074

issue

1

issn

2045-2322

pii

10.1038/s41598-019-38550-6

journal_volume

9

pub_type

杂志文章
  • Simultaneous MR imaging for tissue engineering in a rat model of stroke.

    abstract::In situ tissue engineering within a stroke cavity is gradually emerging as a novel therapeutic paradigm. Considering the varied lesion topology within each subject, the placement and distribution of cells within the lesion cavity is challenging. The use of multiple cell types to reconstruct damaged tissue illustrates ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14597

    authors: Nicholls FJ,Ling W,Ferrauto G,Aime S,Modo M

    更新日期:2015-09-30 00:00:00

  • Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line.

    abstract::Previously we reported that LIM1863 colorectal cancer (CRC) cells secrete three distinct extracellular vesicle subtypes - two subpopulations of exosomes (apical EpCAM-Exos and basolateral A33-Exos) and shed microvesicles (sMVs) - with distinct protein and miRNA signatures. Here, we extend our omics approach to underst...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38397

    authors: Chen M,Xu R,Ji H,Greening DW,Rai A,Izumikawa K,Ishikawa H,Takahashi N,Simpson RJ

    更新日期:2016-12-05 00:00:00

  • Determination of the optimal location for constructing solar photovoltaic farms based on multi-criteria decision system and Dempster-Shafer theory.

    abstract::Considering environmental concerns regarding air pollution which is induced by burning fossil fuels to generate electrical power, utilizing solar energy as a green and sustainable energy source is of great interest. This study proposes a novel framework to determine the optimal location for constructing solar photovol...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65165-z

    authors: Mokarram M,Mokarram MJ,Khosravi MR,Saber A,Rahideh A

    更新日期:2020-05-18 00:00:00

  • Rapid and quantitative antimalarial drug efficacy testing via the magneto-optical detection of hemozoin.

    abstract::Emergence of resistant Plasmodium species makes drug efficacy testing a crucial part of malaria control. Here we describe a novel assay for sensitive, fast and simple drug screening via the magneto-optical detection of hemozoin, a natural biomarker formed during the hemoglobin metabolism of Plasmodium species. By quan...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70860-y

    authors: Molnár P,Orbán Á,Izrael R,Babai R,Marton L,Butykai Á,Karl S,Vértessy BG,Kézsmárki I

    更新日期:2020-08-20 00:00:00

  • Multi-photon absorption limits to heralded single photon sources.

    abstract::Single photons are of paramount importance to future quantum technologies, including quantum communication and computation. Nonlinear photonic devices using parametric processes offer a straightforward route to generating photons, however additional nonlinear processes may come into play and interfere with these sourc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03087

    authors: Husko CA,Clark AS,Collins MJ,De Rossi A,Combrié S,Lehoucq G,Rey IH,Krauss TF,Xiong C,Eggleton BJ

    更新日期:2013-11-04 00:00:00

  • Author Correction: Past continental shelf evolution increased Antarctic ice sheet sensitivity to climatic conditions.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-67554-w

    authors: Colleoni F,De Santis L,Montoli E,Olivo E,Sorlien CC,Bart PJ,Gasson EGW,Bergamasco A,Sauli C,Wardell N,Prato S

    更新日期:2020-06-25 00:00:00

  • Copy Number Variations in a Cohort of 420 Individuals with Neurodevelopmental Disorders From the South of Brazil.

    abstract::Chromosomal microarray (CMA) is now recommended as first tier for the evaluation in individuals with unexplained neurodevelopmental disorders (ND). However, in developing countries such as Brazil, classical cytogenetic tests are still the most used in clinical practice, as reflected by the scarcity of publications of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54347-z

    authors: Chaves TF,Baretto N,Oliveira LF,Ocampos M,Barbato IT,Anselmi M,De Luca GR,Barbato Filho JH,Pinto LLC,Bernardi P,Maris AF

    更新日期:2019-11-28 00:00:00

  • Virtual Screening, pharmacophore development and structure based similarity search to identify inhibitors against IdeR, a transcription factor of Mycobacterium tuberculosis.

    abstract::ideR, an essential gene of Mycobacterium tuberculosis, is an attractive drug target as its conditional knockout displayed attenuated growth phenotype in vitro and in vivo. To the best of our knowledge, no inhibitors of IdeR are identified. We carried out virtual screening of NCI database against the IdeR DNA binding d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04748-9

    authors: Rohilla A,Khare G,Tyagi AK

    更新日期:2017-07-05 00:00:00

  • N-hypermannose glycosylation disruption enhances recombinant protein production by regulating secretory pathway and cell wall integrity in Saccharomyces cerevisiae.

    abstract::Saccharomyces cerevisiae is a robust host for heterologous protein expression. The efficient expression of cellulases in S. cerevisiae is important for the consolidated bioprocess that directly converts lignocellulose into valuable products. However, heterologous proteins are often N-hyperglycosylated in S. cerevisiae...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25654

    authors: Tang H,Wang S,Wang J,Song M,Xu M,Zhang M,Shen Y,Hou J,Bao X

    更新日期:2016-05-09 00:00:00

  • Simultaneous laser excitation of backward volume and perpendicular standing spin waves in full-Heusler Co2FeAl0.5Si0.5 films.

    abstract::Spin-wave dynamics in full-Heusler Co2FeAl0.5Si0.5 films are studied using all-optical pump-probe magneto-optical polar Kerr spectroscopy. Backward volume magnetostatic spin-wave (BVMSW) mode is observed in films with thickness ranging from 20 to 100 nm besides perpendicular standing spin-wave (PSSW) mode, and found t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42513

    authors: Chen Z,Yan Y,Li S,Xu X,Jiang Y,Lai T

    更新日期:2017-02-14 00:00:00

  • Tracking and quantification of dendritic cell migration and antigen trafficking between the skin and lymph nodes.

    abstract::Skin-derived dendritic cells (DCs) play a crucial role in the maintenance of immune homeostasis due to their role in antigen trafficking from the skin to the draining lymph nodes (dLNs). To quantify the spatiotemporal regulation of skin-derived DCs in vivo, we generated knock-in mice expressing the photoconvertible fl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06030

    authors: Tomura M,Hata A,Matsuoka S,Shand FH,Nakanishi Y,Ikebuchi R,Ueha S,Tsutsui H,Inaba K,Matsushima K,Miyawaki A,Kabashima K,Watanabe T,Kanagawa O

    更新日期:2014-08-12 00:00:00

  • Facile and gram-scale synthesis of metal-free catalysts: toward realistic applications for fuel cells.

    abstract::Although numerous reports on nonprecious metal catalysts for replacing expensive Pt-based catalysts have been published, few of these studies have demonstrated their practical application in fuel cells. In this work, we report graphitic carbon nitride and carbon nanofiber hybrid materials synthesized by a facile and g...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08376

    authors: Kim OH,Cho YH,Chung DY,Kim MJ,Yoo JM,Park JE,Choe H,Sung YE

    更新日期:2015-03-02 00:00:00

  • A biofilm and organomineralisation model for the growth and limiting size of ooids.

    abstract::Ooids are typically spherical sediment grains characterised by concentric layers encapsulating a core. There is no universally accepted explanation for ooid genesis, though factors such as agitation, abiotic and/or microbial mineralisation and size limitation have been variously invoked. Here we examine the possible i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18908-4

    authors: Batchelor MT,Burne RV,Henry BI,Li F,Paul J

    更新日期:2018-01-11 00:00:00

  • Horseradish peroxidase inactivation: heme destruction and influence of polyethylene glycol.

    abstract::Horseradish peroxidase (HRP) mediates efficient conversion of many phenolic contaminants and thus has potential applications for pollution control. Such potentially important applications suffer however from the fact that the enzyme becomes quickly inactivated during phenol oxidation and polymerization. The work here ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03126

    authors: Mao L,Luo S,Huang Q,Lu J

    更新日期:2013-11-04 00:00:00

  • Physical and mechanical properties of wood and their geographic variations in Larix sibirica trees naturally grown in Mongolia.

    abstract::We examined the physical and mechanical properties of wood in Siberian larch (Larix sibirica) trees that grow naturally in five Mongolian provenances (Khentii, Arkhangai, Zavkhan, Khuvsgul, and Selenge) and the geographic variations between them. Five trees with stem diameters of 20 to 30 cm at 1.3 m above ground were...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69781-7

    authors: Tumenjargal B,Ishiguri F,Aiso H,Takahashi Y,Nezu I,Takashima Y,Baasan B,Chultem G,Ohshima J,Yokota S

    更新日期:2020-07-31 00:00:00

  • Application of galangin, an active component of Alpinia officinarum Hance (Zingiberaceae), for use in drug-eluting stents.

    abstract::In clinical pathology, stent interposition is used to treat vascular disease but can lead to restenosis. Drug-eluting stents (DES) are most commonly used to suppress restenosis but can also have side effects. Therefore, we investigated the anti-proliferative effect and its possible target in vitro and in vivo. We foun...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08410-2

    authors: Lee JJ,Lee JH,Yim NH,Han JH,Ma JY

    更新日期:2017-08-15 00:00:00

  • Effect of Nitrate Leaching Caused by Swine Manure Application in Fields of the Yellow River Irrigation Zone of Ningxia, China.

    abstract::A five-year swine manure application trial and a study of nitrate leaching losses have been conducted. There were three treatments: traditional without manure (CK), traditional matched manure 4500 kg ha-2 (T1) and traditional matched manure 9000 kg ha-2 (T2). Nitrate nitrogen leaching losses at the 30-, 60-, and 90-cm...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12953-9

    authors: Yang S,Wang Y,Liu R,Zhang A,Yang Z

    更新日期:2017-10-20 00:00:00

  • Arbuscular mycorrhizal enhancement of phosphorus uptake and yields of maize under high planting density in the black soil region of China.

    abstract::Arbuscular mycorrhizal (AM) symbioses are an attractive means of improving the efficiency of soil phosphorus (P) that difficult to be used by plants and may provide a sustainable way of maintaining high yields while reducing P applications. However, quantifying the contribution of indigenous AM fungi on phosphorus upt...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80074-x

    authors: Hou L,Zhang X,Feng G,Li Z,Zhang Y,Cao N

    更新日期:2021-01-13 00:00:00

  • Early-life experience affects honey bee aggression and resilience to immune challenge.

    abstract::Early-life social experiences cause lasting changes in behavior and health for a variety of animals including humans, but it is not well understood how social information ''gets under the skin'' resulting in these effects. Adult honey bees (Apis mellifera) exhibit socially coordinated collective nest defense, providin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15572

    authors: Rittschof CC,Coombs CB,Frazier M,Grozinger CM,Robinson GE

    更新日期:2015-10-23 00:00:00

  • Comparative indoor and outdoor stability measurements of polymer based solar cells.

    abstract::We report comparative indoor and outdoor stability testing of organic solar cells based on a blend between a donor-acceptor polyfluorene copolymer and a fullerene derivative. The outdoor testing was conducted for a period over 12,000 hours in Sheffield, England, with a Ts80 lifetime determined in excess of 10,000 hour...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01505-w

    authors: Zhang Y,Yi H,Iraqi A,Kingsley J,Buckley A,Wang T,Lidzey DG

    更新日期:2017-05-02 00:00:00

  • The first crop plant genetically engineered to release an insect pheromone for defence.

    abstract::Insect pheromones offer potential for managing pests of crop plants. Volatility and instability are problems for deployment in agriculture but could be solved by expressing genes for the biosynthesis of pheromones in the crop plants. This has now been achieved by genetically engineering a hexaploid variety of wheat to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11183

    authors: Bruce TJA,Aradottir GI,Smart LE,Martin JL,Caulfield JC,Doherty A,Sparks CA,Woodcock CM,Birkett MA,Napier JA,Jones HD,Pickett JA

    更新日期:2015-06-25 00:00:00

  • Deep sequencing reveals the eight facets of the influenza A/HongKong/1/1968 (H3N2) virus cap-snatching process.

    abstract::The influenza A virus RNA polymerase cleaves the 5' end of host pre-mRNAs and uses the capped RNA fragments as primers for viral mRNA synthesis. We performed deep sequencing of the 5' ends of viral mRNAs from all genome segments transcribed in both human (A549) and mouse (M-1) cells infected with the influenza A/HongK...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06181

    authors: Sikora D,Rocheleau L,Brown EG,Pelchat M

    更新日期:2014-08-26 00:00:00

  • Bubbler: A Novel Ultra-High Power Density Energy Harvesting Method Based on Reverse Electrowetting.

    abstract::We have proposed and successfully demonstrated a novel approach to direct conversion of mechanical energy into electrical energy using microfluidics. The method combines previously demonstrated reverse electrowetting on dielectric (REWOD) phenomenon with the fast self-oscillating process of bubble growth and collapse....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16537

    authors: Hsu TH,Manakasettharn S,Taylor JA,Krupenkin T

    更新日期:2015-11-16 00:00:00

  • Respiratory tract infections among French Hajj pilgrims from 2014 to 2017.

    abstract::Respiratory tract infections (RTIs) are common among Hajj pilgrims, but risk factors for RTIs and respiratory pathogen acquisition during the Hajj are not clearly identified. Based on previous studies, most frequent pathogens acquired by Hajj pilgrims were investigated: rhinovirus, human coronaviruses, influenza virus...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54370-0

    authors: Hoang VT,Ali-Salem S,Belhouchat K,Meftah M,Sow D,Dao TL,Ly TDA,Drali T,Ninove L,Yezli S,Alotaibi B,Raoult D,Parola P,Pommier de Santi V,Gautret P

    更新日期:2019-11-28 00:00:00

  • Author Correction: Antibiotic drug-resistance as a complex system driven by socio-economic growth and antibiotic misuse.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-50846-1

    authors: Malik B,Bhattacharyya S

    更新日期:2019-10-18 00:00:00

  • Investigating the impact of captivity and domestication on limb bone cortical morphology: an experimental approach using a wild boar model.

    abstract::The lack of bone morphological markers associated with the human control of wild animals has prevented the documentation of incipient animal domestication in archaeology. Here, we assess whether direct environmental changes (i.e. mobility reduction) could immediately affect ontogenetic changes in long bone structure, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75496-6

    authors: Harbers H,Zanolli C,Cazenave M,Theil JC,Ortiz K,Blanc B,Locatelli Y,Schafberg R,Lecompte F,Baly I,Laurens F,Callou C,Herrel A,Puymerail L,Cucchi T

    更新日期:2020-11-04 00:00:00

  • Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selection.

    abstract::Screening and in silico modeling are critical activities for the reduction of experimental costs. They also speed up research notably and strengthen the theoretical framework, thus allowing researchers to numerically quantify the importance of a particular subset of information. For example, in fields such as cancer a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33911-z

    authors: Blanco JL,Porto-Pazos AB,Pazos A,Fernandez-Lozano C

    更新日期:2018-10-24 00:00:00

  • Routine use of HbA1c amongst inpatients hospitalised with decompensated heart failure and the association of dysglycaemia with outcomes.

    abstract::Diabetes is an independent risk factor for development of heart failure and has been associated with poor outcomes in these patients. The prevalence of diabetes continues to rise. Using routine HbA1c measurements on inpatients at a tertiary hospital, we aimed to investigate the prevalence of diabetes amongst patients ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31473-8

    authors: Khoo K,Lew J,Neef P,Kearney L,Churilov L,Robbins R,Tan A,Hachem M,Owen-Jones L,Lam Q,Hart GK,Wilson A,Sumithran P,Johnson D,Srivastava PM,Farouque O,Burrell LM,Zajac JD,Ekinci EI

    更新日期:2018-09-10 00:00:00

  • Rottlerin-mediated inhibition of Toxoplasma gondii growth in BeWo trophoblast-like cells.

    abstract::Autophagy is a crucial and physiological process for cell survival from yeast to mammals, including protozoan parasites. Toxoplasma gondii, an intracellular parasite, typically exploits autophagic machinery of host cell; however host cell upregulates autophagy to combat the infection. Herein we tested the efficacy of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01525-6

    authors: Ietta F,Maioli E,Daveri E,Gonzaga Oliveira J,da Silva RJ,Romagnoli R,Cresti L,Maria Avanzati A,Paulesu L,Barbosa BF,Gomes AO,Roberto Mineo J,Ferro EAV

    更新日期:2017-04-28 00:00:00

  • Magnetic properties of ball-milled SrFe12O19 particles consolidated by Spark-Plasma Sintering.

    abstract::The room-temperature magnetic properties of ball-milled strontium hexaferrite particles consolidated by spark-plasma sintering are strongly influenced by the milling time. Scanning electron microscopy revealed the ball-milled SrFe12O19 particles to have sizes varying over several hundred nanometers. X-Ray powder-diffr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14112

    authors: Stingaciu M,Topole M,McGuiness P,Christensen M

    更新日期:2015-09-15 00:00:00