Abstract:
:Percolation in complex networks is a process that mimics network degradation and a tool that reveals peculiarities of the network structure. During the course of percolation, the emergent properties of networks undergo non-trivial transformations, which include a phase transition in the connectivity, and in some special cases, multiple phase transitions. Such global transformations are caused by only subtle changes in the degree distribution, which locally describe the network. Here we establish a generic analytic theory that describes how structure and sizes of all connected components in the network are affected by simple and colour-dependent bond percolations. This theory predicts locations of the phase transitions, existence of wide critical regimes that do not vanish in the thermodynamic limit, and a phenomenon of colour switching in small components. These results may be used to design percolation-like processes, optimise network response to percolation, and detect subtle signals preceding network collapse.
journal_name
Nat Communjournal_title
Nature communicationsauthors
Kryven Idoi
10.1038/s41467-018-08009-9subject
Has Abstractpub_date
2019-01-24 00:00:00pages
404issue
1issn
2041-1723pii
10.1038/s41467-018-08009-9journal_volume
10pub_type
杂志文章abstract::Spontaneous molecular oscillations are ubiquitous in biology. But to our knowledge, periodic cell migratory patterns have not been observed. Here we report the highly regular, periodic migration of cells along rectilinear tracks generated inside three-dimensional matrices, with each excursion encompassing several cell...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1711
更新日期:2012-03-06 00:00:00
abstract::Efficient and reliable on-chip optical amplifiers and light sources would enable versatile integration of various active functionalities on the silicon platform. Although lasing on silicon has been demonstrated with semiconductors by using methods such as wafer bonding or molecular beam epitaxy, cost-effective mass pr...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-08369-w
更新日期:2019-01-25 00:00:00
abstract::Contextual influences on choice are ubiquitous in ecological settings. Current evidence suggests that subjective values are normalized with respect to the distribution of potentially available rewards. However, how this context-sensitivity is realised in the brain remains unknown. To address this, here we examine func...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12416
更新日期:2016-08-18 00:00:00
abstract::OPCML, a tumor suppressor gene, is frequently silenced epigenetically in ovarian and other cancers. Here we report, by analysis of databases of tumor sequences, the observation of OPCML somatic missense mutations from various tumor types and the impact of these mutations on OPCML function, by solving the X-ray crystal...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-10966-8
更新日期:2019-07-17 00:00:00
abstract::The central issue in the physics of cuprate superconductivity is the mutual relationship among superconductivity, pseudogap and broken-spatial-symmetry states. A magnetic field B suppresses superconductivity, providing an opportunity to investigate the competition among these states. Although various B-induced electro...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11747
更新日期:2016-05-27 00:00:00
abstract::Some Bacteroidetes and other human colonic bacteria can degrade arabinoxylans, common polysaccharides found in dietary fiber. Previous work has identified gene clusters (polysaccharide-utilization loci, PULs) for degradation of simple arabinoxylans. However, the degradation of complex arabinoxylans (containing side ch...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-20737-5
更新日期:2021-01-19 00:00:00
abstract::Sensitive detection of protein interactions and post-translational modifications of native proteins is a challenge for research and diagnostic purposes. A method for this, which could be used in point-of-care devices and high-throughput screening, should be reliable, cost effective and robust. To achieve this, here we...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8294
更新日期:2015-06-12 00:00:00
abstract::Late-onset Alzheimer's disease (AD) can, in part, be considered a metabolic disease. Besides age, female sex and APOE ε4 genotype represent strong risk factors for AD that also give rise to large metabolic differences. We systematically investigated group-specific metabolic alterations by conducting stratified associa...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-14959-w
更新日期:2020-03-02 00:00:00
abstract::Protein scaffolds can provide a promising alternative to antibodies for various biomedical and biotechnological applications, including therapeutics. Here we describe the design and development of the Alphabody, a protein scaffold featuring a single-chain antiparallel triple-helix coiled-coil fold. We report affinity-...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6237
更新日期:2014-10-30 00:00:00
abstract::The development of intelligent materials, in particular those showing the highly sensitive mechanoresponsive luminescence (MRL), is desirable but challenging. Here we report a design strategy for constructing high performance On-Off MRL materials by introducing nitrophenyl groups to molecules with aggregation-induced ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-05476-y
更新日期:2018-08-02 00:00:00
abstract::NHE9 (SLC9A9) is an endosomal cation/proton antiporter with orthologues in yeast and bacteria. Rare, missense substitutions in NHE9 are genetically linked with autism but have not been functionally evaluated. Here we use evolutionary conservation analysis to build a model structure of NHE9 based on the crystal structu...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3510
更新日期:2013-01-01 00:00:00
abstract::The anterior temporal lobes (ATL) have become a key brain region of interest in cognitive neuroscience founded upon neuropsychological investigations of semantic dementia (SD). The purposes of this investigation are to generate a single unified model that captures the known cognitive-behavioural variations in SD and m...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-16089-9
更新日期:2020-05-22 00:00:00
abstract::The striking diversity of bird beak shapes is an outcome of natural selection, yet the relative importance of the limitations imposed by the process of beak development on generating such variation is unclear. Untangling these factors requires mapping developmental mechanisms over a phylogeny far exceeding model syste...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms4700
更新日期:2014-04-16 00:00:00
abstract::Somatic mutations in the RNase IIIb domain of DICER1 arise in cancer and disrupt the cleavage of 5' pre-miRNA arms. Here, we characterize an unstudied, recurrent, mutation (S1344L) in the DICER1 RNase IIIa domain in tumors from The Cancer Genome Atlas (TCGA) project and MSK-IMPACT profiling. RNase IIIa/b hotspots are ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-11610-1
更新日期:2019-08-15 00:00:00
abstract::Chemical modifications on DNA molecules, such as 5-methylcytosine and 5-hydroxymethylcytosine, play important roles in the mammalian brain. A novel DNA adenine modification, N(6)-methyladenine (6mA), has recently been found in mammalian cells. However, the presence and function(s) of 6mA in the mammalian brain remain ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-01195-y
更新日期:2017-10-24 00:00:00
abstract::Bright solitons are non-dispersive wave solutions, arising in a diverse range of nonlinear, one-dimensional systems, including atomic Bose-Einstein condensates with attractive interactions. In reality, cold-atom experiments can only approach the idealized one-dimensional limit necessary for the realization of true sol...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2893
更新日期:2013-01-01 00:00:00
abstract::To fulfill its role in protein biogenesis, the endoplasmic reticulum (ER) depends on the Hsp70-type molecular chaperone BiP, which requires a constant ATP supply. However, the carrier that catalyzes ATP uptake into the ER was unknown. Here, we report that our screen of gene expression datasets for member(s) of the fam...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06003-9
更新日期:2018-08-28 00:00:00
abstract::Plasmodium vivax poses unique challenges for malaria control and elimination, notably the potential for relapses to maintain transmission in the face of drug-based treatment and vector control strategies. We developed an individual-based mathematical model of P. vivax transmission calibrated to epidemiological data fr...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-05860-8
更新日期:2018-08-17 00:00:00
abstract::Each skeletal muscle acquires its unique size before birth, when terminally differentiating myocytes fuse to form a defined number of multinucleated myofibres. Although mice in which the transcription factor Myogenin is mutated lack most myogenesis and die perinatally, a specific cell biological role for Myogenin has ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06583-6
更新日期:2018-10-12 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Nature communications
pub_type: 杂志文章,已发布勘误
doi:10.1038/s41467-020-17694-4
更新日期:2020-07-23 00:00:00
abstract::Designing chiral materials to manipulate the biological activities of cells has been an important area not only in chemistry and material science, but also in cell biology and biomedicine. Here, we introduce monolayer plasmonic chiral Au nanoparticle (NP) films modified with L- or D-penicillamine (Pen) to be developed...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-02268-8
更新日期:2017-12-08 00:00:00
abstract::Sliding clamps encircle DNA and tether polymerases and other factors to the genomic template. However, the molecular mechanism of clamp sliding on DNA is unknown. Using crystallography, NMR and molecular dynamics simulations, here we show that the human clamp PCNA recognizes DNA through a double patch of basic residue...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms13935
更新日期:2017-01-10 00:00:00
abstract::As energy efficiency becomes a paramount issue in this day and age, reversible computing may serve as a critical step towards energy conservation in information technology. The inputs of reversible computing elements define the outputs and vice versa. Some reversible gates such as the Fredkin gate are also universal; ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11424
更新日期:2016-04-26 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Nature communications
pub_type: 杂志文章,已发布勘误
doi:10.1038/s41467-020-18712-1
更新日期:2020-09-16 00:00:00
abstract::Extracellular vesicles have an important function in cellular communication. Here, we show that human and mouse monocytes release TGF-β1-transporting vesicles in response to the pathogenic fungus Candida albicans. Soluble β-glucan from C. albicans binds to complement receptor 3 (CR3, also known as CD11b/CD18) on monoc...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-16241-5
更新日期:2020-05-11 00:00:00
abstract::The effects of high-fat diet (HFD) and postprandial endotoxemia on the development of type 2 diabetes are not fully understood. Here we show that the serine protease prostasin (PRSS8) regulates hepatic insulin sensitivity by modulating Toll-like receptor 4 (TLR4)-mediated signalling. HFD triggers the suppression of PR...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms4428
更新日期:2014-03-11 00:00:00
abstract::Radiotherapy is not currently informed by the genetic composition of an individual patient's tumour. To identify genetic features regulating survival after DNA damage, here we conduct large-scale profiling of cellular survival after exposure to radiation in a diverse collection of 533 genetically annotated human tumou...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11428
更新日期:2016-04-25 00:00:00
abstract::The endoplasmic reticulum-mitochondria encounter structure (ERMES) connects the mitochondrial outer membrane with the ER. Multiple functions have been linked to ERMES, including maintenance of mitochondrial morphology, protein assembly and phospholipid homeostasis. Since the mitochondrial distribution and morphology p...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms13021
更新日期:2016-10-10 00:00:00
abstract::Human activity has caused dramatic population declines in many wild species. The resulting bottlenecks have a profound impact on the genetic makeup of a species with unknown consequences for health. A key genetic factor for species survival is the evolution of deleterious mutation load, but how bottleneck strength and...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-14803-1
更新日期:2020-02-21 00:00:00
abstract::Human height is a representative phenotype to elucidate genetic architecture. However, the majority of large studies have been performed in European population. To investigate the rare and low-frequency variants associated with height, we construct a reference panel (N = 3,541) for genotype imputation by integrating t...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-12276-5
更新日期:2019-09-27 00:00:00