The Rice Alpha-Amylase, Conserved Regulator of Seed Maturation and Germination.

Abstract:

:Alpha-amylase, the major form of amylase with secondary carbohydrate binding sites, is a crucial enzyme throughout the growth period and life cycle of angiosperm. In rice, alpha-amylase isozymes are critical for the formation of the storage starch granule during seed maturation and motivate the stored starch to nourish the developing seedling during seed germination which will directly affect the plant growth and field yield. Alpha-amylase has not yet been studied intensely to understand its classification, structure, expression trait, and expression regulation in rice and other crops. Among the 10-rice alpha-amylases, most were exclusively expressed in the developing seed embryo and induced in the seed germination process. During rice seed germination, the expression of alpha-amylase genes is known to be regulated negatively by sugar in embryos, however positively by gibberellin (GA) in endosperm through competitively binding to the specific promoter domain; besides, it is also controlled by a series of other abiotic or biotic factors, such as salinity. In this review, we overviewed the research progress of alpha-amylase with focus on seed germination and reflected on how in-depth work might elucidate its regulation and facilitate crop breeding as an efficient biomarker.

journal_name

Int J Mol Sci

authors

Damaris RN,Lin Z,Yang P,He D

doi

10.3390/ijms20020450

subject

Has Abstract

pub_date

2019-01-21 00:00:00

issue

2

issn

1422-0067

pii

ijms20020450

journal_volume

20

pub_type

杂志文章,评审
  • Mg2+ Is a Missing Link in Plant Cell Ca2+ Signalling and Homeostasis-A Study on Vicia faba Guard Cells.

    abstract::Hyperpolarization-activated calcium channels (HACCs) are found in the plasma membrane and tonoplast of many plant cell types, where they have an important role in Ca2+-dependent signalling. The unusual gating properties of HACCs in plants, i.e., activation by membrane hyperpolarization rather than depolarization, dict...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21113771

    authors: Lemtiri-Chlieh F,Arold ST,Gehring C

    更新日期:2020-05-27 00:00:00

  • A review of microsatellite markers and their applications in rice breeding programs to improve blast disease resistance.

    abstract::Over the last few decades, the use of molecular markers has played an increasing role in rice breeding and genetics. Of the different types of molecular markers, microsatellites have been utilized most extensively, because they can be readily amplified by PCR and the large amount of allelic variation at each locus. Mi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms141122499

    authors: Miah G,Rafii MY,Ismail MR,Puteh AB,Rahim HA,Islam KhN,Latif MA

    更新日期:2013-11-14 00:00:00

  • Genetic analysis of health-related secondary metabolites in a Brassica rapa recombinant inbred line population.

    abstract::The genetic basis of the wide variation for nutritional traits in Brassica rapa is largely unknown. A new Recombinant Inbred Line (RIL) population was profiled using High Performance Liquid Chromatography (HPLC) and Nuclear Magnetic Resonance (NMR) analysis to detect quantitative trait loci (QTLs) controlling seed toc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms140815561

    authors: Bagheri H,El-Soda M,Kim HK,Fritsche S,Jung C,Aarts MG

    更新日期:2013-07-25 00:00:00

  • Dissecting Intra-Tumor Heterogeneity by the Analysis of Copy Number Variations in Single Cells: The Neuroblastoma Case Study.

    abstract::Tumors often show intra-tumor heterogeneity because of genotypic differences between all the cells that compose it and that derive from it. Recent studies have shown significant aspects of neuroblastoma heterogeneity that may affect the diagnostic-therapeutic strategy. Therefore, we developed a laboratory protocol, ba...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20040893

    authors: Cariati F,Borrillo F,Shankar V,Nunziato M,D'Argenio V,Tomaiuolo R

    更新日期:2019-02-19 00:00:00

  • In Vitro Innovation of Tendon Tissue Engineering Strategies.

    abstract::Tendinopathy is the term used to refer to tendon disorders. Spontaneous adult tendon healing results in scar tissue formation and fibrosis with suboptimal biomechanical properties, often resulting in poor and painful mobility. The biomechanical properties of the tissue are negatively affected. Adult tendons have a lim...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21186726

    authors: Citeroni MR,Ciardulli MC,Russo V,Della Porta G,Mauro A,El Khatib M,Di Mattia M,Galesso D,Barbera C,Forsyth NR,Maffulli N,Barboni B

    更新日期:2020-09-14 00:00:00

  • Decitabine and Melphalan Fail to Reactivate p73 in p53 Deficient Myeloma Cells.

    abstract::(1) Background: TP53 deficiency remains a major adverse event in Multiple Myeloma (MM) despite therapeutic progresses. As it is not possible to target TP53 deficiency with pharmacological agents, we explored the possibility of activating another p53 family member, p73, which has not been well studied in myeloma. (2) M...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19010040

    authors: Gillardin PS,Descamps G,Maiga S,Tessoulin B,Djamai H,Lucani B,Chiron D,Moreau P,Le Gouill S,Amiot M,Pellat-Deceunynck C,Moreau-Aubry A

    更新日期:2017-12-23 00:00:00

  • Proteomic Analysis of Mouse Brain Subjected to Spaceflight.

    abstract::There is evidence that spaceflight poses acute and late risks to the central nervous system. To explore possible mechanisms, the proteomic changes following spaceflight in mouse brain were characterized. Space Shuttle Atlantis (STS-135) was launched from the Kennedy Space Center (KSC) on a 13-day mission. Within 3⁻5 h...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20010007

    authors: Mao XW,Sandberg LB,Gridley DS,Herrmann EC,Zhang G,Raghavan R,Zubarev RA,Zhang B,Stodieck LS,Ferguson VL,Bateman TA,Pecaut MJ

    更新日期:2018-12-20 00:00:00

  • Clinical and Neurobehavioral Features of Three Novel Kabuki Syndrome Patients with Mosaic KMT2D Mutations and a Review of Literature.

    abstract::Kabuki syndrome (KS) is a rare disorder characterized by multiple congenital anomalies and variable intellectual disability caused by mutations in KMT2D/MLL2 and KDM6A/UTX, two interacting chromatin modifier responsible respectively for 56-75% and 5-8% of the cases. To date, three KS patients with mosaic KMT2D deletio...

    journal_title:International journal of molecular sciences

    pub_type:

    doi:10.3390/ijms19010082

    authors: Lepri FR,Cocciadiferro D,Augello B,Alfieri P,Pes V,Vancini A,Caciolo C,Squeo GM,Malerba N,Adipietro I,Novelli A,Sotgiu S,Gherardi R,Digilio MC,Dallapiccola B,Merla G

    更新日期:2017-12-28 00:00:00

  • Dietary Supplementation with Lactobacillus casei Alleviates Lipopolysaccharide-Induced Liver Injury in a Porcine Model.

    abstract::This study aims to determine whether Lactobacillus casei (L. casei) could relieve liver injury in piglets challenged with lipopolysaccharide (LPS). Piglets were randomly allocated into one of the three groups: control, LPS, and L. casei. The control and LPS groups were fed a corn- and soybean meal-based diet, whereas ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18122535

    authors: Zhao D,Wu T,Yi D,Wang L,Li P,Zhang J,Hou Y,Wu G

    更新日期:2017-11-26 00:00:00

  • Involvement of Vanin-1 in Ameliorating Effect of Oxidative Renal Tubular Injury in Dahl-Salt Sensitive Rats.

    abstract::In salt-sensitive hypertension, reactive oxygen species (ROS) play a major role in the progression of renal disease partly through the activation of the mineralocorticoid receptor (MR). We have previously demonstrated that urinary vanin-1 is an early biomarker of oxidative renal tubular injury. However, it remains unk...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20184481

    authors: Hosohata K,Jin D,Takai S,Iwanaga K

    更新日期:2019-09-11 00:00:00

  • Asymmetric introgression in the horticultural living fossil cycas sect. Asiorientales using a genome-wide scanning approach.

    abstract::The Asian cycads are mostly allopatric, distributed in small population sizes. Hybridization between allopatric species provides clues in determining the mechanism of species divergence. Horticultural introduction provides the chance of interspecific gene flow between allopatric species. Two allopatrically eastern Asi...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms14048228

    authors: Chiang YC,Huang BH,Chang CW,Wan YT,Lai SJ,Huang S,Liao PC

    更新日期:2013-04-15 00:00:00

  • Growth Inhibitory Signaling of the Raf/MEK/ERK Pathway.

    abstract::In response to extracellular stimuli, the Raf/MEK/extracellular signal-regulated kinase (ERK) pathway regulates diverse cellular processes. While mainly known as a mitogenic signaling pathway, the Raf/MEK/ERK pathway can mediate not only cell proliferation and survival but also cell cycle arrest and death in different...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21155436

    authors: Wu PK,Becker A,Park JI

    更新日期:2020-07-30 00:00:00

  • Nuclear Phosphoinositides: Their Regulation and Roles in Nuclear Functions.

    abstract::Polyphosphoinositides (PPIns) are a family of seven lipid messengers that regulate a vast array of signalling pathways to control cell proliferation, migration, survival and differentiation. PPIns are differentially present in various sub-cellular compartments and, through the recruitment and regulation of specific pr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20122991

    authors: Fiume R,Faenza I,Sheth B,Poli A,Vidalle MC,Mazzetti C,Abdul SH,Campagnoli F,Fabbrini M,Kimber ST,Mariani GA,Xian J,Marvi MV,Mongiorgi S,Shah Z,Divecha N

    更新日期:2019-06-19 00:00:00

  • Intraductal Pancreatic Mucinous Neoplasms: A Tumor-Biology Based Approach for Risk Stratification.

    abstract::Pancreatic ductal adenocarcinoma is one of the most lethal human cancers. Its precursor lesions include pancreatic intra-epithelial neoplasia, mucinous cystic neoplasm, and intraductal papillary mucinous neoplasm (IPMN). IPMNs usually present as an incidental finding at imaging in 2.6% of the population and, according...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21176386

    authors: Nasca V,Chiaravalli M,Piro G,Esposito A,Salvatore L,Tortora G,Corbo V,Carbone C

    更新日期:2020-09-02 00:00:00

  • Regulation of Dual-Specificity Phosphatase (DUSP) Ubiquitination and Protein Stability.

    abstract::Mitogen-activated protein kinases (MAPKs) are key regulators of signal transduction and cell responses. Abnormalities in MAPKs are associated with multiple diseases. Dual-specificity phosphatases (DUSPs) dephosphorylate many key signaling molecules, including MAPKs, leading to the regulation of duration, magnitude, or...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20112668

    authors: Chen HF,Chuang HC,Tan TH

    更新日期:2019-05-30 00:00:00

  • Experimental Pulmonary Tuberculosis in the Absence of Detectable Brain Infection Induces Neuroinflammation and Behavioural Abnormalities in Male BALB/c Mice.

    abstract::Tuberculosis (TB) is a chronic infectious disease in which prolonged, non-resolutive inflammation of the lung may lead to metabolic and neuroendocrine dysfunction. Previous studies have reported that individuals coursing pulmonary TB experience cognitive or behavioural changes; however, the pathogenic substrate of suc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21249483

    authors: Lara-Espinosa JV,Santana-Martínez RA,Maldonado PD,Zetter M,Becerril-Villanueva E,Pérez-Sánchez G,Pavón L,Mata-Espinosa D,Barrios-Payán J,López-Torres MO,Marquina-Castillo B,Hernández-Pando R

    更新日期:2020-12-13 00:00:00

  • Single Crystal FLIM Characterization of Clofazimine Loaded in Silica-Based Mesoporous Materials and Zeolites.

    abstract::Clofazimine (CLZ) is an effective antibiotic used against a wide spectrum of Gram-positive bacteria and leprosy. One of its main drawbacks is its poor solubility in water. Silica based materials are used as drug delivery carriers that can increase the solubility of different hydrophobic drugs. Here, we studied how the...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20122859

    authors: Angiolini L,Cohen B,Douhal A

    更新日期:2019-06-12 00:00:00

  • Epigenetic Biomarkers in Colorectal Cancer Patients Receiving Adjuvant or Neoadjuvant Therapy: A Systematic Review of Epidemiological Studies.

    abstract::Colorectal cancer (CRC) represents the third-most common cancer worldwide and one of the main challenges for public health. Despite great strides in the application of neoadjuvant and adjuvant therapies for rectal and colon cancer patients, each of these treatments is still associated with certain adverse effects and ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,meta分析

    doi:10.3390/ijms20153842

    authors: Barchitta M,Maugeri A,Li Destri G,Basile G,Agodi A

    更新日期:2019-08-06 00:00:00

  • Podocyte Lysosome Dysfunction in Chronic Glomerular Diseases.

    abstract::Podocytes are visceral epithelial cells covering the outer surface of glomerular capillaries in the kidney. Blood is filtered through the slit diaphragm of podocytes to form urine. The functional and structural integrity of podocytes is essential for the normal function of the kidney. As a membrane-bound organelle, ly...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21051559

    authors: Li G,Kidd J,Li PL

    更新日期:2020-02-25 00:00:00

  • The HSP90 Family: Structure, Regulation, Function, and Implications in Health and Disease.

    abstract::The mammalian HSP90 family of proteins is a cluster of highly conserved molecules that are involved in myriad cellular processes. Their distribution in various cellular compartments underlines their essential roles in cellular homeostasis. HSP90 and its co-chaperones orchestrate crucial physiological processes such as...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19092560

    authors: Hoter A,El-Sabban ME,Naim HY

    更新日期:2018-08-29 00:00:00

  • Plant MicroRNAs in Cross-Kingdom Regulation of Gene Expression.

    abstract::MicroRNAs (miRNAs) are a class of noncoding small RNAs, which play a crucial role in post-transcriptional gene regulation. Recently, various reports revealed that miRNAs could be transmitted between species to mediate cross-kingdom regulation by integrating into a specific target gene-mediated regulatory pathway to ex...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19072007

    authors: Wang W,Liu D,Zhang X,Chen D,Cheng Y,Shen F

    更新日期:2018-07-10 00:00:00

  • Apelin Controls Angiogenesis-Dependent Glioblastoma Growth.

    abstract::Glioblastoma (GBM) present with an abundant and aberrant tumor neo-vasculature. While rapid growth of solid tumors depends on the initiation of tumor angiogenesis, GBM also progress by infiltrative growth and vascular co-option. The angiogenic factor apelin (APLN) and its receptor (APLNR) are upregulated in GBM patien...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21114179

    authors: Frisch A,Kälin S,Monk R,Radke J,Heppner FL,Kälin RE

    更新日期:2020-06-11 00:00:00

  • Plant defense against insect herbivores.

    abstract::Plants have been interacting with insects for several hundred million years, leading to complex defense approaches against various insect feeding strategies. Some defenses are constitutive while others are induced, although the insecticidal defense compound or protein classes are often similar. Insect herbivory induce...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms140510242

    authors: Fürstenberg-Hägg J,Zagrobelny M,Bak S

    更新日期:2013-05-16 00:00:00

  • Strategy of Hepatic Metabolic Defects Induced by beclin1 Heterozygosity in Adult Zebrafish.

    abstract::Hepatic disorders have been increasing in recent years because of high carbohydrate diets. Hepatocytes depend mainly on the basal autophagy to maintain hepatic glucose/lipid homeostasis in mammals. However, the regulatory mechanisms of autophagy in hepatic energy metabolism are still unknown in fish species. According...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21041533

    authors: Mawed SA,He Y,Zhang J,Mei J

    更新日期:2020-02-24 00:00:00

  • Methionine Regulates mTORC1 via the T1R1/T1R3-PLCβ-Ca2+-ERK1/2 Signal Transduction Process in C2C12 Cells.

    abstract::The mammalian target of rapamycin complex 1 (mTORC1) integrates amino acid (AA) availability to support protein synthesis and cell growth. Taste receptor type 1 member (T1R) is a G protein-coupled receptor that functions as a direct sensor of extracellular AA availability to regulate mTORC1 through Ca2+ stimulation an...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17101684

    authors: Zhou Y,Ren J,Song T,Peng J,Wei H

    更新日期:2016-10-11 00:00:00

  • Verification of the Saccharina japonica Translocon Tic20 and its Localization in the Chloroplast Membrane in Diatoms.

    abstract::Tic20 is an important translocon protein that plays a role in protein transport in the chloroplast. The sequence of Tic20 was determined in the lower brown alga Saccharina japonica. Structural analysis of SjTic20 revealed a noncanonical structure consisting of an N-terminal non-cyanobacterium-originated EF-hand domain...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20164000

    authors: Chen Z,Wang X,Li S,Yao J,Shao Z,Duan D

    更新日期:2019-08-16 00:00:00

  • Isolation and characterization of microsatellite markers in the domestic ferret (Mustela putorius furo).

    abstract::The domestic ferret (Mustela putorius furo) is an important model organism for the study of avian influenza and other diseases of humans and animals, as well as a popular pet animal. In order to evaluate genetic diversity and study disease relationships in ferrets, 22 nuclear microsatellite loci (17 dinucleotide and 5...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms131216592

    authors: Ernest HB,Drazenovich TL,Dalbeck LS,Hawkins MG

    更新日期:2012-12-05 00:00:00

  • Advances in carcinogenic metal toxicity and potential molecular markers.

    abstract::Metal compounds such as arsenic, cadmium, chromium, cobalt, lead, mercury, and nickel are classified as carcinogens affecting human health through occupational and environmental exposure. However, the underlying mechanisms involved in tumor formation are not well clarified. Interference of metal homeostasis may result...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms12129576

    authors: Koedrith P,Seo YR

    更新日期:2011-01-01 00:00:00

  • Cytomegalovirus Infections after Hematopoietic Stem Cell Transplantation: Current Status and Future Immunotherapy.

    abstract::Cytomegalovirus (CMV) infection after hematopoietic stem cell transplantation (HSCT) is one of the critical infectious complications related to host immune recovery. The spectrum of CMV infection is quite extensive, from asymptomatic CMV reactivation presenting mainly as CMV DNAemia to fatal CMV diseases involving gut...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20112666

    authors: Cho SY,Lee DG,Kim HJ

    更新日期:2019-05-30 00:00:00

  • Picropodophyllotoxin, an Epimer of Podophyllotoxin, Causes Apoptosis of Human Esophageal Squamous Cell Carcinoma Cells Through ROS-Mediated JNK/P38 MAPK Pathways.

    abstract::Esophageal squamous cell carcinoma (ESCC), a major histologic type of esophageal cancer, is one of the frequent causes of cancer-related death worldwide. Picropodophyllotoxin (PPT) is the main component of Podophyllum hexandrum root with antitumor activity via apoptosis-mediated mechanisms in several cancer cells. How...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21134640

    authors: Kwak AW,Yoon G,Lee MH,Cho SS,Shim JH,Chae JI

    更新日期:2020-06-30 00:00:00