Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs.

Abstract:

:Extracellular vesicles (EVs) are important mediators of cell-cell communication due to their cargo content of proteins, lipids, and RNAs. We previously reported that small EVs (SEVs) called exosomes promote directed and random cell motility, invasion, and serum-independent growth. In contrast, larger EVs (LEVs) were not active in those assays, but might have unique functional properties. In order to identify protein cargos that may contribute to different functions of SEVs and LEVs, we used isobaric tags for relative and absolute quantitation (iTRAQ)-liquid chromatography (LC) tandem mass spectrometry (MS) on EVs isolated from a colon cancer cell line. Bioinformatics analyses revealed that SEVs are enriched in proteins associated with cell-cell junctions, cell-matrix adhesion, exosome biogenesis machinery, and various signaling pathways. In contrast, LEVs are enriched in proteins associated with ribosome and RNA biogenesis, processing, and metabolism. Western blot analysis of EVs purified from two different cancer cell types confirmed the enrichment of cell-matrix and cell-cell adhesion proteins in SEVs. Consistent with those data, we found that cells exhibit enhanced adhesion to surfaces coated with SEVs compared to an equal protein concentration of LEVs. These data suggest that a major function of SEVs is to promote cellular adhesion.

journal_name

J Proteome Res

authors

Jimenez L,Yu H,McKenzie AJ,Franklin JL,Patton JG,Liu Q,Weaver AM

doi

10.1021/acs.jproteome.8b00647

subject

Has Abstract

pub_date

2019-03-01 00:00:00

pages

947-959

issue

3

eissn

1535-3893

issn

1535-3907

journal_volume

18

pub_type

杂志文章
  • Proteomic analysis identifies dysfunction in cellular transport, energy, and protein metabolism in different brain regions of atypical frontotemporal lobar degeneration.

    abstract::Frontotemporal lobar degeneration (FTLD) is an umbrella term for a heterogeneous group of young-onset dementias of uncertain prevalence and incidence worldwide. Atypical cases of FTLD with fused in sarcoma inclusions (aFTLD-U) have been described recently, but their molecular characterization is still due. Using shotg...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2012279

    authors: Martins-de-Souza D,Guest PC,Mann DM,Roeber S,Rahmoune H,Bauder C,Kretzschmar H,Volk B,Baborie A,Bahn S

    更新日期:2012-04-06 00:00:00

  • Insight into the salivary transcriptome and proteome of Dipetalogaster maxima.

    abstract::Dipetalogaster maxima is a blood-sucking Hemiptera that inhabits sylvatic areas in Mexico. It usually takes its blood meal from lizards, but following human population growth, it invaded suburban areas, feeding also on humans and domestic animals. Hematophagous insect salivary glands produce potent pharmacologic compo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100866h

    authors: Assumpção TC,Charneau S,Santiago PB,Francischetti IM,Meng Z,Araújo CN,Pham VM,Queiroz RM,de Castro CN,Ricart CA,Santana JM,Ribeiro JM

    更新日期:2011-02-04 00:00:00

  • Implementation of an algorithm for modeling disulfide bond patterns using mass spectrometry.

    abstract::The paper describes the implementation of a software system based on the Fenyö disulfide bond assignment algorithm. The system allows an investigator to enter data derived from mass spectrum peak assignments, a target protein sequence and other experimental conditions. The output of the system is the set of disulfide ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034016a

    authors: Craig R,Krokhin O,Wilkins J,Beavis RC

    更新日期:2003-11-01 00:00:00

  • Improved Integrated Whole Proteomic and Phosphoproteomic Profiles of Severe Acute Pancreatitis.

    abstract::Severe acute pancreatitis (SAP) is caused by complicated biological factors, and revealing its complex pathogenesis by single-target analysis is difficult. Systematic studies have developed slowly because extraction of degradable pancreatic proteins exposed to multiple proteases is challenging. We present integrated w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00229

    authors: Wang C,Zhang Y,Tan J,Chen B,Sun L

    更新日期:2020-06-05 00:00:00

  • Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.

    abstract::Protein chemical cross-linking combined with mass spectrometry has become an important technique for the analysis of protein structure and protein-protein interactions. A variety of cross-linkers are well developed, but reliable, rapid, and user-friendly tools for large-scale analysis of cross-linked proteins are stil...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00141

    authors: Lu L,Millikin RJ,Solntsev SK,Rolfs Z,Scalf M,Shortreed MR,Smith LM

    更新日期:2018-07-06 00:00:00

  • On the development of plasma protein biomarkers.

    abstract::The development of plasma biomarkers has proven to be more challenging than initially anticipated. Many studies have reported lists of candidate proteins rather than validated candidate markers with an assigned performance to a specific clinical objective. Biomarker research necessitates a clear rational framework wit...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr1008515

    authors: Surinova S,Schiess R,Hüttenhain R,Cerciello F,Wollscheid B,Aebersold R

    更新日期:2011-01-07 00:00:00

  • PanelComposer: a web-based panel construction tool for multivariate analysis of disease biomarker candidates.

    abstract::Measuring and evaluating diagnostic efficiency is important in biomarker discovery and validation. The receiver operating characteristic (ROC) curve is a graphical plot for assessing the performance of a classifier or predictor that can be used to test the sensitivity and specificity of diagnostic biomarkers. In this ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3004387

    authors: Jeong SK,Na K,Kim KY,Kim H,Paik YK

    更新日期:2012-12-07 00:00:00

  • Protein biomarkers for in vitro testing of embryotoxicity.

    abstract::There are new challenges for hazard and risk assessment in the chemical industry with regard to REACH legislation in Europe and related activities in the U.S. and Japan, which require the development of novel in vitro models for the molecular characterization of drug- or chemical-related effects replacing conventional...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100514e

    authors: Groebe K,Hayess K,Klemm-Manns M,Schwall G,Wozny W,Steemans M,Peters AK,Sastri C,Jaeckel P,Stegmann W,Zengerling H,Schopf R,Poznanovic S,Stummann TC,Seiler A,Spielmann H,Schrattenholz A

    更新日期:2010-11-05 00:00:00

  • Phosphoproteome study reveals Hsp27 as a novel signaling molecule involved in GDNF-induced neurite outgrowth.

    abstract::Glial-cell-line-derived neurotrophic factor (GDNF) is a most potent survival factor for dopaminergic neurons. In addition, GDNF was also found to promote neurite outgrowth in dopaminergic neurons. However, despite the potential clinical and physiological importance of GDNF, its mechanism of action is unclear. Therefor...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr801052v

    authors: Hong Z,Zhang QY,Liu J,Wang ZQ,Zhang Y,Xiao Q,Lu J,Zhou HY,Chen SD

    更新日期:2009-06-01 00:00:00

  • Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue.

    abstract::To decrease the mortality of lung cancer, better screening and diagnostic tools as well as treatment options are needed. Protein glycosylation is one of the major post-translational modifications that is altered in cancer, but it is not exactly clear which glycan structures are affected. A better understanding of the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00255

    authors: Ruhaak LR,Taylor SL,Stroble C,Nguyen UT,Parker EA,Song T,Lebrilla CB,Rom WN,Pass H,Kim K,Kelly K,Miyamoto S

    更新日期:2015-11-06 00:00:00

  • In-depth proteomic and glycomic analysis of the adult-stage Cooperia oncophora excretome/secretome.

    abstract::Cooperia oncophora is one of the most common intestinal parasitic nematodes in cattle worldwide. To date, C. oncophora infections are treated using broad-spectrum anthelmintics. However, during the past decade, reports of anthelmintic resistance in this parasite species have emerged worldwide, necessitating new avenue...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400114y

    authors: Borloo J,De Graef J,Peelaers I,Nguyen DL,Mitreva M,Devreese B,Hokke CH,Vercruysse J,Claerebout E,Geldhof P

    更新日期:2013-09-06 00:00:00

  • (1)H NMR serum metabonomics for understanding metabolic dysregulation in women with idiopathic recurrent spontaneous miscarriage during implantation window.

    abstract::In an attempt to find out the association of metabolic dysregulation with poor endometrial receptivity and pregnancy loss, serum metabonomic profiling of women with idiopathic recurrent spontaneous miscarriage (IRSM) is carried out and compared with fertile controls. (1)H nuclear magnetic resonance (NMR)-based metabon...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500379n

    authors: Banerjee P,Dutta M,Srivastava S,Joshi M,Chakravarty B,Chaudhury K

    更新日期:2014-06-06 00:00:00

  • Proteomics and leukocytes: an approach to understanding potential molecular mechanisms of inflammatory responses.

    abstract::Leukocytes play an important role in the progression of disease and leukocyte-derived proteins are associated with the pathogenesis of the disease. Leukocyte activation causes production of inflammatory mediators, over-expression of cell surface adhesion molecules, and an increase in migration and infiltration, phagoc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr0499601

    authors: Wang X,Zhao H,Andersson R

    更新日期:2004-09-01 00:00:00

  • Protein profilings in mouse liver regeneration after partial hepatectomy using iTRAQ technology.

    abstract::Liver is unique in its capability to regenerate after an injury. Liver regeneration after a 2/3 partial hepatectomy served as a classical model and is adopted frequently to study the mechanism of liver regeneration. In the present study, semiquantitative analysis of protein expression in mouse liver regeneration follo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800696m

    authors: Hsieh HC,Chen YT,Li JM,Chou TY,Chang MF,Huang SC,Tseng TL,Liu CC,Chen SF

    更新日期:2009-02-01 00:00:00

  • Comprehensive Examination of the Mouse Lung Metabolome Following Mycobacterium tuberculosis Infection Using a Multiplatform Mass Spectrometry Approach.

    abstract::The mechanisms whereby Mycobacterium tuberculosis (Mtb) rewires the host metabolism in vivo are surprisingly unexplored. Here, we used three high-resolution mass spectrometry platforms to track altered lung metabolic changes associated with Mtb infection of mice. The multiplatform data sets were merged using consensus...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00868

    authors: Fernández-García M,Rey-Stolle F,Boccard J,Reddy VP,García A,Cumming BM,Steyn AJC,Rudaz S,Barbas C

    更新日期:2020-05-01 00:00:00

  • Identification of Plasma Metabolites Prognostic of Acute Kidney Injury after Cardiac Surgery with Cardiopulmonary Bypass.

    abstract::Acute kidney injury (AKI) is a frequent complication after cardiopulmonary bypass, but early detection of postoperative AKI remains challenging. Protein biomarkers predict AKI excellently in homogeneous cohorts but are less reliable in patients suffering from various comorbidities. We employed nuclear magnetic resonan...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00219

    authors: Zacharias HU,Hochrein J,Vogl FC,Schley G,Mayer F,Jeleazcov C,Eckardt KU,Willam C,Oefner PJ,Gronwald W

    更新日期:2015-07-02 00:00:00

  • Stage-specific proteome signatures in early bovine embryo development.

    abstract::Development of early embryonic stages before activation of the embryonic genome depends on sufficiently stored products of the maternal genome, adequate recruitment and degradation of mRNAs, as well as activation, deactivation, and relocation of proteins. By application of an isobaric tagging for relative and absolute...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500550t

    authors: Deutsch DR,Fröhlich T,Otte KA,Beck A,Habermann FA,Wolf E,Arnold GJ

    更新日期:2014-10-03 00:00:00

  • Snake venomics of the lancehead pitviper Bothrops asper: geographic, individual, and ontogenetic variations.

    abstract::We report the comparative proteomic characterization of the venoms of adult and newborn specimens of the lancehead pitviper Bothrops asper from two geographically isolated populations from the Caribbean and the Pacific versants of Costa Rica. The crude venoms were fractionated by reverse-phase HPLC, followed by analys...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800332p

    authors: Alape-Girón A,Sanz L,Escolano J,Flores-Díaz M,Madrigal M,Sasa M,Calvete JJ

    更新日期:2008-08-01 00:00:00

  • Proteomic comparison between maturation drying and prematurely imposed drying of Zea mays seeds reveals a potential role of maturation drying in preparing proteins for seed germination, seedling vigor, and pathogen resistance.

    abstract::We have studied the role(s) of maturation drying in the acquisition of germinability, seedling vigor and pathogen resistance by comparing the proteome changes in maize embryo and endosperm during mature and prematurely imposed drying. Prematurely imposed dried seeds at 40 days after pollination (DAP) germinated almost...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4007574

    authors: Wang WQ,Ye JQ,Rogowska-Wrzesinska A,Wojdyla KI,Jensen ON,Møller IM,Song SQ

    更新日期:2014-02-07 00:00:00

  • Proteomic Profiling for Metabolic Pathways Involved in Interactive Effects of Elevated Carbon Dioxide and Nitrogen on Leaf Growth in a Perennial Grass Species.

    abstract::Elevated atmospheric CO2 and nitrogen are major environmental factors affecting shoot growth. The objectives of this study are to determine the interactive effects of elevated CO2 and nitrogen on leaf growth in tall fescue ( Festuca arundinacea) and to identify major proteins and associated metabolic pathways underlyi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00951

    authors: Yu J,Fan N,Li R,Zhuang L,Xu Q,Huang B

    更新日期:2019-06-07 00:00:00

  • Pilot phase I/II personalized therapy trial for metastatic colorectal cancer: evaluating the feasibility of protein pathway activation mapping for stratifying patients to therapy with imatinib and panitumumab.

    abstract::This nonrandomized phase I/II trial assessed the efficacy/tolerability of imatinib plus panitumumab in patients affected by metastatic colorectal cancer (mCRC) after stratification to treatment by selection of activated imatinib drug targets using reverse-phase protein array (RPPA). mCRC patients presenting with a bio...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401267m

    authors: Pierobon M,Silvestri A,Spira A,Reeder A,Pin E,Banks S,Parasido E,Edmiston K,Liotta L,Petricoin E

    更新日期:2014-06-06 00:00:00

  • Proteomics of nitrogen remobilization in poplar bark.

    abstract::Seasonal nitrogen (N) cycling in temperate deciduous trees involves the accumulation of bark storage proteins (BSPs) in phloem parenchyma and xylem ray cells. BSPs are anabolized using recycled N during autumn leaf senescence and later become a source of N during spring shoot growth as they are catabolized. Little is ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501090p

    authors: Islam N,Li G,Garrett WM,Lin R,Sriram G,Cooper B,Coleman GD

    更新日期:2015-02-06 00:00:00

  • Unraveling persistent host cell infection with Coxiella burnetii by quantitative proteomics.

    abstract::The interaction between the immune system and invading bacteria is sufficient to eradicate microorganisms for the majority of bacterial infections, but suppression of the microbicidal response leads to reactivation or chronic evolution of infections and to bacterial persistence. To identify the cellular pathways affec...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200422f

    authors: Vranakis I,De Bock PJ,Papadioti A,Samoilis G,Tselentis Y,Gevaert K,Tsiotis G,Psaroulaki A

    更新日期:2011-09-02 00:00:00

  • Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.

    abstract::The past decade has been marked by the emergence of selective affinity media and sensitive mass spectrometry instrumentation that facilitated large-scale phosphoproteome analyses and expanded the repertoire of protein phosphorylation. Despite these remarkable advances, the precise location of the phosphorylation site ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300229m

    authors: Courcelles M,Bridon G,Lemieux S,Thibault P

    更新日期:2012-07-06 00:00:00

  • N-linked glycan structures of the human Fcγ receptors produced in NS0 cells.

    abstract::Immune recognition of nonself is coordinated through complex mechanisms involving both innate and adaptive responses. Circulating antibodies communicate with effector cells of the innate immune system through surface receptors known as Fcγ receptors (FcγRs). The FcγRs are single-pass transmembrane glycoproteins respon...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400344h

    authors: Cosgrave EF,Struwe WB,Hayes JM,Harvey DJ,Wormald MR,Rudd PM

    更新日期:2013-08-02 00:00:00

  • Proteomic analysis and identification of the structural and regulatory proteins of the Rhodobacter capsulatus gene transfer agent.

    abstract::The gene transfer agent of Rhodobacter capsulatus (GTA) is a unique phage-like particle that exchanges genetic information between members of this same species of bacterium. Besides being an excellent tool for genetic mapping, the GTA has a number of advantages for biotechnological and nanoengineering purposes. To fac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8006045

    authors: Chen F,Spano A,Goodman BE,Blasier KR,Sabat A,Jeffery E,Norris A,Shabanowitz J,Hunt DF,Lebedev N

    更新日期:2009-02-01 00:00:00

  • Rapid expression of functional genomic libraries.

    abstract::Genomic-scale analysis of protein function is currently limited by the ability to rapidly express the enormous diversity of protein targets in their active form. We describe a method to construct transcriptionally active expression templates (ETs) in parallel using a single PCR step wherein the overlap-extension react...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050459y

    authors: Woodrow KA,Airen IO,Swartz JR

    更新日期:2006-12-01 00:00:00

  • QconCAT standard for calibration of ion mobility-mass spectrometry systems.

    abstract::Ion mobility-mass spectrometry (IM-MS) is a useful technique for determining information about analyte ion conformation in addition to mass/charge ratio. The physical principles that govern the mobility of an ion through a gas in the presence of a uniform electric field are well understood, enabling rotationally avera...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3005327

    authors: Chawner R,McCullough B,Giles K,Barran PE,Gaskell SJ,Eyers CE

    更新日期:2012-11-02 00:00:00

  • Proteomics reveals that redox regulation is disrupted in patients with ethylmalonic encephalopathy.

    abstract::Deficiency of the sulfide metabolizing protein ETHE1 is the cause of ethylmalonic encephalopathy (EE), an inherited and severe metabolic disorder. To study the molecular effects of EE, we performed a proteomics study on mitochondria from cultured patient fibroblast cells. Samples from six patients were analyzed and re...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101218d

    authors: Palmfeldt J,Vang S,Stenbroen V,Pavlou E,Baycheva M,Buchal G,Monavari AA,Augoustides-Savvopoulou P,Mandel H,Gregersen N

    更新日期:2011-05-06 00:00:00

  • Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results.

    abstract::An algorithm for protein identification based on mass spectrometric proteolytic peptide mapping and genome database searching is presented. The algorithm ranks database proteins based on direct calculation of the probability of random matching and assigns the statistical significance to each result. We investigate the...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034048y

    authors: Eriksson J,Fenyö D

    更新日期:2004-01-01 00:00:00