Characterization of a novel MICB variant in an individual from the Chinese Uyghur population, MICB*005:09, by cloning and sequencing.

Abstract:

:A new allelic variant in MICB*005 lineage, MICB*005:09, has been identified in a male Uyghur individual recruited from Xinjiang Uyghur Autonomous Region, China by PCR-sequence-based typing (Sanger sequencing) and confirmed by cloning and sequencing. Aligned with MICB*005:03, this new allelic variant shows a synonymous T substitution at nucleotide position 8 in exon 2, corresponding to codon 3 (CAC→CAT) of the mature MICB mRNA transcript.

journal_name

Int J Immunogenet

authors

Tursun M,Wang Z,Guo W,Hasim A,Tian W

doi

10.1111/iji.12410

subject

Has Abstract

pub_date

2019-02-01 00:00:00

pages

17-19

issue

1

eissn

1744-3121

issn

1744-313X

journal_volume

46

pub_type

杂志文章
  • Molecular diversity of HLA-A, -B and -C alleles in a North Indian population as determined by PCR-SSOP.

    abstract::We have used molecular methods to determine the frequencies of human leukocyte antigen (HLA)-A, -B and -C alleles in normal, healthy, unrelated individuals from North India using polymerase chain reaction and hybridization with sequence-specific oligonucleotide probes as there is no comprehensive report showing molecu...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2007.00677.x

    authors: Rani R,Marcos C,Lazaro AM,Zhang Y,Stastny P

    更新日期:2007-06-01 00:00:00

  • Th-1 cytokines gene polymorphism in human brucellosis.

    abstract::Brucellosis is a worldwide zoonosis. Infection with Brucella species results in the activation of cell-mediated immune response. The interaction between Th1and Th2 cytokines determines the outcome of disease. Production of each cytokine is in turn affected by genetic factors. In this study, we investigated the possibl...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2006.00626.x

    authors: Davoudi S,Amirzargar AA,Hajiabdolbaghi M,Rasoolinejad M,Soodbakhsh A,Jafari S,Piri H,Maleknejad P,Bagherian H,Madadi N,Nikbin B

    更新日期:2006-10-01 00:00:00

  • HLA gene and haplotype frequencies in Russians, Bashkirs and Tatars, living in the Chelyabinsk Region (Russian South Urals).

    abstract::We have characterized the HLA-A, -B, -DRB1, -DQA1 and -DQB1 profiles of three major ethnic groups living in Chelyabinsk Region of Russian South Urals, viz., Russians (n = 207), Bashkirs (n = 146) and Tatars (n = 135). First field level typing was performed by PCR using sequence-specific primers. Estimates included car...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2012.01117.x

    authors: Suslova TA,Burmistrova AL,Chernova MS,Khromova EB,Lupar EI,Timofeeva SV,Devald IV,Vavilov MN,Darke C

    更新日期:2012-10-01 00:00:00

  • ICAM-1 polymorphisms and development of cutaneous malignant melanoma.

    abstract::Tumour growth in cutaneous malignant melanoma (CMM) is mediated by cell adhesion molecules, including intercellular adhesion molecule-1 (ICAM-1). ICAM-1 expression is associated with increasing Breslow thickness of vertical growth-phase tumours and, in patients with stage 1 disease, may be associated with disease free...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2005.00539.x

    authors: Howell WM,Rose-Zerilli MJ,Theaker JM,Bateman AC

    更新日期:2005-12-01 00:00:00

  • Using ESTs database to predict and validate single polymorphisms at the HLA system.

    abstract::We propose a bioinformatics pipeline in which we use an ESTs database to predict and validate single-nucleotide polymorphisms (SNPs) directly linked to gene-coding regions at the HLA class I genes (HLA-A, HLA-B and HLA-C). Annotation originated from our analysis revealed various classes of possible new variations that...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2011.01076.x

    authors: Figueiredo TC,de Oliveira JR

    更新日期:2012-06-01 00:00:00

  • Identification of a novel MICB allele, MICB*030, by cloning and sequencing.

    abstract::A novel MICB allele, MICB*030, has been identified in a healthy Chinese individual of Mongol ethnicity residing in northern China by polymerase chain reaction sequence-based typing (PCR-SBT) and confirmed by cloning and sequencing. MICB*030 was linked to HLA-B*35. Aligned with MICB*005:02, MICB*030 has a nonsynonymous...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12207

    authors: Wang WY,Wang F,Tian W

    更新日期:2015-08-01 00:00:00

  • No evidence for association of the TP53 12139 and the BAX-248 polymorphisms with endemic pemphigus foliaceus (fogo selvagem).

    abstract::Pemphigus foliaceus (PF) is an autoimmune bullous epidermal disease, characterized by autoantibodies specific to the desmosomal protein desmoglein 1 (dsg1) and by acantholysis, the rupture of the cellular junctions among keratinocytes. Known also as fogo selvagem (wild fire) in Brazil, the disease has distinct epidemi...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2006.00585.x

    authors: Köhler KF,Petzl-Erler ML

    更新日期:2006-04-01 00:00:00

  • The molecular characterization of a catalase from Chinese mitten crab Eriocheir sinensis.

    abstract::Catalase (CAT) is an antioxidant enzyme and plays a significant role in the protection against oxidative stress by reducing hydrogen peroxide. The CAT cDNA of Eriocheir sinensis (EsCAT) was cloned via RACE technique. The complete sequence of EsCAT cDNA consisted of a 5' untranslated regions (UTR) of 224 bp, a 3' UTR o...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12019

    authors: Wang M,Wang L,Zhou Z,Gao Y,Wang L,Shi X,Gai Y,Mu C,Song L

    更新日期:2013-06-01 00:00:00

  • Vascular endothelial growth factor +405 G/C,-460 T/C and -2578 A/C polymorphisms are not associated with insulin resistance in polycystic ovary syndrome.

    abstract::Insulin resistance (IR) and pancreatic beta-cell dysfunction are usual comorbidities in polycystic ovary syndrome (PCOS). Vascular endothelial growth factor (VEGF) is known to play an important role in the pathogenesis of PCOS. This study examined firstly the possible association of common +405 G/C,-460 T/C and -2578 ...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2010.00915.x

    authors: Vural P,Küskü-Kiraz Z,Doğru-Abbasoğlu S,Cil E,Karadağ B,Uysal M

    更新日期:2010-08-01 00:00:00

  • Intron 4 polymorphism of the endothelial nitric oxide synthase eNOS gene and early microangiopathy in type 1 diabetes.

    abstract::Nitric oxide (NO) is an endogenous vasodilator involved in inflammatory and autoimmune response, and in the pathophysiology of diabetic vascular disease. Endothelium-derived NO is formed from L-arginine by endothelial NO synthase (eNOS), and earlier studies have provided evidence for altered NO metabolism and impaired...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2009.00839.x

    authors: Mamoulakis D,Bitsori M,Galanakis E,Vazgiourakis V,Panierakis C,Goulielmos GN

    更新日期:2009-06-01 00:00:00

  • Role of TLR4 C>1196T (Thr399Ile) and TLR4 A>896G (Asp299Gly) polymorphisms in a North Indian population with asthma: a case-control study.

    abstract::Toll-like receptor 4 (TLR4) is the most important TLR among the pattern recognition receptors which recognizes lipopolysaccharide of gram-negative bacteria. They identify a highly conserved structure of microbes called pathogen-associated molecular patterns and activate immune and inflammatory responses that have been...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12115

    authors: Sinha S,Singh J,Jindal SK,Birbian N,Singla N

    更新日期:2014-12-01 00:00:00

  • Characterization of the novel HLA-DQB1*06:48 allele by group-specific sequencing.

    abstract::HLA-DQB1*06:48 has single nucleotide polymorphisms within codons 70 and 62 of exon 2 (GGG>AGG and AAG>AAC) relative to HLA-DQB1*06:02:01 and HLA-DQB1*06:37. This results in amino acid differences (G>R and K>N) that will change the polarity and charge of the encoded antigen and may therefore affect its peptide repertoi...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12004

    authors: Foster L,Tate D,Poulton K

    更新日期:2013-08-01 00:00:00

  • Study on VNTR polymorphism of gene IL-1RA in 19 Chinese populations.

    abstract::Earlier studies suggested that a variable number tandem repeat (VNTR) polymorphism in intron 2 of the interleukin-1 receptor antagonist (IL-1RA) gene might be associated with some chronic inflammatory diseases, autoimmune diseases and solid tumours. To study the distribution of this polymorphism in China, 1352 samples...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2009.00891.x

    authors: Jiang J,Zhang X,Sun D,Jin Y,Bai J,Chen F,Fu S

    更新日期:2010-04-01 00:00:00

  • Association between interferon lambda 3 rs12979860 polymorphism and clinical outcome in dengue virus-infected children.

    abstract::Single nucleotide polymorphisms (SNPs) in immune-related genes have been shown to play a role in driving the development of the severe phenotypes of dengue virus (DENV) infection. We assessed the association between IFNL3 gene SNP (rs12979860) and dengue clinical outcomes in children. Patients with dengue-related symp...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12477

    authors: da Silva Cezar RD,da Silva Castanha PM,Matos Freire N,Mola C,Feliciano do Carmo R,Tenório Cordeiro M,Baptista P,Silva Vasconcelos LR,Moura P,da Silva Teixeira VG

    更新日期:2020-08-01 00:00:00

  • HLA-A*11:53 is shown to be identical to the corrected A*11:02:01 allele sequence.

    abstract::According to the IMGT/HLA Database, the DNA sequence of A*11:53 is identical to A*11:02:01 in exons 2, 3, 4 and 5 except at codon 276. A*11:53 was reported as a rare variant of A*11, while A*11:02:01 was understood to be the second most frequently observed variant of A*11 after A*11:01:01 in Taiwanese. We sequenced HL...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2012.01121.x

    authors: Yang KL,Chu CC,Marsh SG,Lin PY

    更新日期:2012-12-01 00:00:00

  • Cytokine typing: SNP allele frequencies in the Iranian population.

    abstract::Single nucleotide polymorphisms within the promoter or other regulatory sequences of cytokine genes were evaluated and compared between an Iranian population and populations of different ethnic/geographical background. In 40 healthy Iranian subjects, cytokine typing was performed by polymerase chain reaction-sequence-...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章,收录出版

    doi:10.1111/j.1744-313X.2006.00595.x

    authors: Bagheri M,Abdi-Rad I,Omrani D,Khalkhali HR

    更新日期:2006-06-01 00:00:00

  • Region 1p13.2 including the RSBN1, PTPN22, AP4B1 and long non-coding RNA genes does not bear risk factors for endemic pemphigus foliaceus (fogo selvagem).

    abstract::Pemphigus foliaceus (PF) is an autoimmune skin disease characterized by autoantibodies directed mainly against desmoglein-1. The purpose of this study was to determine whether differential susceptibility to endemic PF in Brazil (fogo selvagem) is associated with polymorphisms at the cytogenetic location 1p13.2. Four s...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12423

    authors: Lobo-Alves SC,de Oliveira LA,Petzl-Erler ML

    更新日期:2019-06-01 00:00:00

  • The complement-mediated prozone effect in the Luminex single-antigen bead assay and its impact on HLA antibody determination in patient sera.

    abstract::The Luminex xMAP system has become an important tool for HLA antibody screening and identification in sera of transplant patients. Recently, the Luminex single antigen bead assay was shown to be prone to an artefact, the so called prozone phenomenon: Sera with high titer HLA antibodies gave negative results when teste...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1111/j.1744-313X.2012.01147.x

    authors: Weinstock C,Schnaidt M

    更新日期:2013-06-01 00:00:00

  • Characterization of tumour necrosis factor-alpha genetic variants and mRNA expression in patients with severe sepsis.

    abstract::Tumour necrosis factor-alpha (TNFalpha) has been implicated in the pathogenicity of severe sepsis by both genetic association studies and animal models. Conflicting functional data have emerged in relation to genetic variants and TNFalpha protein production. Therefore, we assessed the functionality of TNFalpha genetic...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2008.00773.x

    authors: O'Dwyer MJ,Mankan AK,Ryan AW,Lawless MW,Stordeur P,Kelleher D,McManus R,Ryan T

    更新日期:2008-08-01 00:00:00

  • Frequencies of MICA alleles in patients from southern Brazil with multibacillary and paucibacillary leprosy.

    abstract::Leprosy is a chronic infectious disease caused by Mycobacterium leprae, which mainly affects the skin and nervous system. The disease has several clinical forms. This study investigated the MICA and HLA-B genes in 223 samples from leprosy patients and 201 samples from healthy individuals matched for age, gender and et...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2011.01074.x

    authors: do Sacramento WS,Mazini PS,Franceschi DA,de Melo FC,Braga MA,Sell AM,Tsuneto LT,Visentainer JE

    更新日期:2012-06-01 00:00:00

  • CCR5 genetic variants and epidemiological determinants for HPV infection and cervical premalignant lesions.

    abstract::Human papillomavirus (HPV) infection can lead to the development of productive epithelial lesions and cervical cancer. Most cervical HPV infections are solved by cell-mediated immunity within 1-2 years, and it is known that chronic inflammation predisposes to lesions progression and tumour development. In this context...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12444

    authors: Mangieri LFL,Sena MM,Cezar-Dos-Santos F,Trugilo KP,Okuyama NCM,Pereira ÉR,Maria GCQ,Watanabe MAE,de Oliveira KB

    更新日期:2019-10-01 00:00:00

  • The Pekin duck programmed death-ligand 1: cDNA cloning, genomic structure, molecular characterization and mRNA expression analysis.

    abstract::Programmed death ligand-1 (PD-L1) plays an important role in the attenuation of adaptive immune responses in higher vertebrates. Here, we describe the identification of the Pekin duck PD-L1 orthologue (duPD-L1) and its gene structure. The duPD-L1 cDNA encodes a 311-amino acid protein that has an amino acid identity of...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/iji.12175

    authors: Yao Q,Fischer KP,Tyrrell DL,Gutfreund KS

    更新日期:2015-04-01 00:00:00

  • Killer cell immunoglobulin-like receptors on NK cells: the how, where and why.

    abstract::Natural killer (NK) cells have killer cell immunoglobulin-like receptors (KIR) that recognize and interact with HLA class I antigen. The KIRs are a multigene family and its members are often highly polymorphic. Evidence is emerging from disease-association studies that KIR receptors can play beneficial roles in viral ...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1111/j.1744-313X.2007.00739.x

    authors: Gardiner CM

    更新日期:2008-02-01 00:00:00

  • HLA haplotypes in recurrent aphthous stomatitis: a mode of inheritance?

    abstract::The aim of this study was to investigate the genetic association between recurrent aphthous stomatitis (RAS) and human leucocyte antigen (HLA) class I and II alleles and HLA haplotypes. Families selected had at least one child suffering from recurrent aphthous stomatitis in addition to one or both of the parents. HLA-...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2008.00801.x

    authors: Albanidou-Farmaki E,Deligiannidis A,Markopoulos AK,Katsares V,Farmakis K,Parapanissiou E

    更新日期:2008-12-01 00:00:00

  • Heme oxygenase 1 gene polymorphisms and outcome of renal transplantation.

    abstract::Heme oxygenase isoenzyme HO-1 has been linked to several cytoprotective functions with a potentially beneficial role in transplantation. In the present study, the effect of genetic variation in HO-1 on renal allograft outcome was investigated. Six hundred and eighty patients subject to renal transplantation in a singl...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2007.00688.x

    authors: Turpeinen H,Kyllönen LE,Parkkinen J,Laine J,Salmela KT,Partanen J

    更新日期:2007-08-01 00:00:00

  • Discovery of the novel HLA-DRB1*09:01:08 allele in a Taiwanese volunteer bone marrow donor and identification of the probable HLA-A, HLA-B and HLA-DRB1 haplotype in association with DRB1*09:01:08.

    abstract::We report here the novel variant of HLA-DRB1*09:01, DRB1*09:01:08, discovered in a Taiwanese volunteer bone marrow donor by a sequence-based typing (SBT) method. The DNA sequence of DRB1*09:01:08 is identical to the sequence of DRB1*09:01:02 in exon 2 except a silent mutation at nucleotide position 261(C→T) (GCC→GCT a...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2012.01143.x

    authors: Yang KL,Lee SK,Yang SY,Kao RH,Lin CL,Lin PY

    更新日期:2013-04-01 00:00:00

  • cDNA cloning, genomic structure and mRNA expression pattern of porcine type I interferons receptor 2 gene.

    abstract::Type I interferons (IFN) are important mediators of the host defence against viruses through binding to the cell surface receptors, among which the binding to type I IFN receptor 2 (IFNAR2) is the very first step initiating a complex signal transduction cascade. By using RT-PCR and 5' RACE approaches, we obtained porc...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2011.01018.x

    authors: Xing F,Li Y,Liang S,Liu D,Jiang C,Zhang Y,Kang L,Jiang Y

    更新日期:2011-08-01 00:00:00

  • Promoter polymorphism of IL-18 gene in pulmonary tuberculosis in South Indian population.

    abstract::Interleukin-18 (IL-18) plays a vital role in both innate and acquired immunity. We analysed polymorphisms at -607(C/A) and -137(G/A) in the promoter region of IL-18 gene by allele-specific polymerase chain reaction in normal healthy subjects (n = 173) and patients with pulmonary tuberculosis (n = 165). Allele, genotyp...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2007.00714.x

    authors: Harishankar M,Selvaraj P,Rajeswari DN,Anand SP,Narayanan PR

    更新日期:2007-10-01 00:00:00

  • HLA and disease: guilt by association.

    abstract::It is now over forty years since the first associations between particular HLA antigens and disease susceptibility were described, and the identification of large numbers HLA-associated diseases parallels our increased understanding of the genetic complexity of the HLA system and its extensive polymorphism. However, s...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1111/iji.12088

    authors: Howell WM

    更新日期:2014-02-01 00:00:00

  • Reliability of HLA-Cw data collected in unrelated bone marrow registry and their usefulness for preliminary donor selection.

    abstract::In the present study, we addressed the question of how often HLA-DRB1-matched donors can be found by further typing of AB-matched donors and whether Cw preselection can be helpful. Sixty-eight patients and 174 donors were enrolled in the study. In all donors, confirmatory DNA Cw typing was performed to check reliabili...

    journal_title:International journal of immunogenetics

    pub_type: 杂志文章

    doi:10.1111/j.1744-313X.2005.00533.x

    authors: Nowak J,Mika-Witkowska R,Zajko M,Łopacz P

    更新日期:2005-10-01 00:00:00