Materials genomics methods for high-throughput construction of COFs and targeted synthesis.

Abstract:

:Materials genomics represents a research mode for materials development, for which reliable methods for efficient materials construction are essential. Here we present a methodology for high-throughput construction of covalent organic frameworks (COFs) based on materials genomics strategy, in which a gene partition method of genetic structural units (GSUs) with reactive sites and quasi-reactive assembly algorithms (QReaxAA) for structure generation were proposed by mimicking the natural growth processes of COFs, leading to a library of 130 GSUs and a database of ~470,000 materials containing structures with 10 unreported topologies as well as the existing COFs. As a proof-of-concept example, two generated 3D-COFs with ffc topology and two 2D-COFs with existing topologies were successfully synthesized. This work not only presents useful genomics methods for developing COFs and largely extended the COF structures, but also will stimulate the switch of materials development mode from trial-and-error to theoretical prediction-experimental validation.

journal_name

Nat Commun

journal_title

Nature communications

authors

Lan Y,Han X,Tong M,Huang H,Yang Q,Liu D,Zhao X,Zhong C

doi

10.1038/s41467-018-07720-x

subject

Has Abstract

pub_date

2018-12-10 00:00:00

pages

5274

issue

1

issn

2041-1723

pii

10.1038/s41467-018-07720-x

journal_volume

9

pub_type

杂志文章
  • Field measurements suggest the mechanism of laser-assisted water condensation.

    abstract::Because of the potential impact on agriculture and other key human activities, efforts have been dedicated to the local control of precipitation. The most common approach consists of dispersing small particles of dry ice, silver iodide, or other salts in the atmosphere. Here we show, using field experiments conducted ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1462

    authors: Henin S,Petit Y,Rohwetter P,Stelmaszczyk K,Hao ZQ,Nakaema WM,Vogel A,Pohl T,Schneider F,Kasparian J,Weber K,Wöste L,Wolf JP

    更新日期:2011-08-30 00:00:00

  • TNFα blockade overcomes resistance to anti-PD-1 in experimental melanoma.

    abstract::Antibodies against programmed cell death-1 (PD-1) have considerably changed the treatment for melanoma. However, many patients do not display therapeutic response or eventually relapse. Moreover, patients treated with anti-PD-1 develop immune-related adverse events that can be cured with anti-tumor necrosis factor α (...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02358-7

    authors: Bertrand F,Montfort A,Marcheteau E,Imbert C,Gilhodes J,Filleron T,Rochaix P,Andrieu-Abadie N,Levade T,Meyer N,Colacios C,Ségui B

    更新日期:2017-12-22 00:00:00

  • Integrated spatial multiplexing of heralded single-photon sources.

    abstract::The non-deterministic nature of photon sources is a key limitation for single-photon quantum processors. Spatial multiplexing overcomes this by enhancing the heralded single-photon yield without enhancing the output noise. Here the intrinsic statistical limit of an individual source is surpassed by spatially multiplex...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3582

    authors: Collins MJ,Xiong C,Rey IH,Vo TD,He J,Shahnia S,Reardon C,Krauss TF,Steel MJ,Clark AS,Eggleton BJ

    更新日期:2013-01-01 00:00:00

  • Inactivation of a CRF-dependent amygdalofugal pathway reverses addiction-like behaviors in alcohol-dependent rats.

    abstract::The activation of a neuronal ensemble in the central nucleus of the amygdala (CeA) during alcohol withdrawal has been hypothesized to induce high levels of alcohol drinking in dependent rats. In the present study we describe that the CeA neuronal ensemble that is activated by withdrawal from chronic alcohol exposure c...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09183-0

    authors: de Guglielmo G,Kallupi M,Pomrenze MB,Crawford E,Simpson S,Schweitzer P,Koob GF,Messing RO,George O

    更新日期:2019-03-18 00:00:00

  • High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model.

    abstract::The intestinal microbiome is a unique ecosystem and an essential mediator of metabolism and obesity in mammals. However, studies investigating the impact of the diet on the establishment of the gut microbiome early in life are generally lacking, and most notably so in primate models. Here we report that a high-fat mat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4889

    authors: Ma J,Prince AL,Bader D,Hu M,Ganu R,Baquero K,Blundell P,Alan Harris R,Frias AE,Grove KL,Aagaard KM

    更新日期:2014-05-20 00:00:00

  • Discovery of first-in-class reversible dual small molecule inhibitors against G9a and DNMTs in hematological malignancies.

    abstract::The indisputable role of epigenetics in cancer and the fact that epigenetic alterations can be reversed have favoured development of epigenetic drugs. In this study, we design and synthesize potent novel, selective and reversible chemical probes that simultaneously inhibit the G9a and DNMTs methyltransferase activity....

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15424

    authors: San José-Enériz E,Agirre X,Rabal O,Vilas-Zornoza A,Sanchez-Arias JA,Miranda E,Ugarte A,Roa S,Paiva B,Estella-Hermoso de Mendoza A,Alvarez RM,Casares N,Segura V,Martín-Subero JI,Ogi FX,Soule P,Santiveri CM,Campos-Olivas

    更新日期:2017-05-26 00:00:00

  • Selective photocatalytic conversion of methane into carbon monoxide over zinc-heteropolyacid-titania nanocomposites.

    abstract::Chemical utilization of vast fossil and renewable feedstocks of methane remains one of the most important challenges of modern chemistry. Herein, we report direct and selective methane photocatalytic oxidation at ambient conditions into carbon monoxide, which is an important chemical intermediate and a platform molecu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08525-2

    authors: Yu X,De Waele V,Löfberg A,Ordomsky V,Khodakov AY

    更新日期:2019-02-11 00:00:00

  • LRRK2 G2019S mutation attenuates microglial motility by inhibiting focal adhesion kinase.

    abstract::In response to brain injury, microglia rapidly extend processes that isolate lesion sites and protect the brain from further injury. Here we report that microglia carrying a pathogenic mutation in the Parkinson's disease (PD)-associated gene, G2019S-LRRK2 (GS-Tg microglia), show retarded ADP-induced motility and delay...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9255

    authors: Choi I,Kim B,Byun JW,Baik SH,Huh YH,Kim JH,Mook-Jung I,Song WK,Shin JH,Seo H,Suh YH,Jou I,Park SM,Kang HC,Joe EH

    更新日期:2015-09-14 00:00:00

  • Publisher Correction: Parallel evolution in the emergence of highly pathogenic avian influenza A viruses.

    abstract::A Correction to this paper has been published: https://doi.org/10.1038/s41467-020-20006-5. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-020-20006-5

    authors: Escalera-Zamudio M,Golden M,Gutiérrez B,Thézé J,Keown JR,Carrique L,Bowden TA,Pybus OG

    更新日期:2020-11-23 00:00:00

  • Microscopic origins of the terahertz carrier relaxation and cooling dynamics in graphene.

    abstract::The ultrafast dynamics of hot carriers in graphene are key to both understanding of fundamental carrier-carrier interactions and carrier-phonon relaxation processes in two-dimensional materials, and understanding of the physics underlying novel high-speed electronic and optoelectronic devices. Many recent experiments ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11617

    authors: Mihnev MT,Kadi F,Divin CJ,Winzer T,Lee S,Liu CH,Zhong Z,Berger C,de Heer WA,Malic E,Knorr A,Norris TB

    更新日期:2016-05-25 00:00:00

  • Human immunoglobulin G hinge regulates agonistic anti-CD40 immunostimulatory and antitumour activities through biophysical flexibility.

    abstract::Human immunoglobulin G (IgG) agonistic antibodies targeting costimulatory immunoreceptors represent promising cancer immunotherapies yet to be developed. Whether, and how, human IgG hinge and Fc impact on their agonistic functions have been disputed. Here, we show that different natural human IgGs confer divergent ago...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12097-6

    authors: Liu X,Zhao Y,Shi H,Zhang Y,Yin X,Liu M,Zhang H,He Y,Lu B,Jin T,Li F

    更新日期:2019-09-27 00:00:00

  • Stable magnetostructural coupling with tunable magnetoresponsive effects in hexagonal ferromagnets.

    abstract::The magnetostructural coupling between the structural and the magnetic transition has a crucial role in magnetoresponsive effects in a martensitic-transition system. A combination of various magnetoresponsive effects based on this coupling may facilitate the multifunctional applications of a host material. Here we dem...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1868

    authors: Liu E,Wang W,Feng L,Zhu W,Li G,Chen J,Zhang H,Wu G,Jiang C,Xu H,de Boer F

    更新日期:2012-05-29 00:00:00

  • An independent poor-prognosis subtype of breast cancer defined by a distinct tumor immune microenvironment.

    abstract::How mixtures of immune cells associate with cancer cell phenotype and affect pathogenesis is still unclear. In 15 breast cancer gene expression datasets, we invariably identify three clusters of patients with gradual levels of immune infiltration. The intermediate immune infiltration cluster (Cluster B) is associated ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13329-5

    authors: Tekpli X,Lien T,Røssevold AH,Nebdal D,Borgen E,Ohnstad HO,Kyte JA,Vallon-Christersson J,Fongaard M,Due EU,Svartdal LG,Sveli MAT,Garred Ø,OSBREAC.,Frigessi A,Sahlberg KK,Sørlie T,Russnes HG,Naume B,Kristensen VN

    更新日期:2019-12-03 00:00:00

  • The role of mechanics in biological and bio-inspired systems.

    abstract::Natural systems frequently exploit intricate multiscale and multiphasic structures to achieve functionalities beyond those of man-made systems. Although understanding the chemical make-up of these systems is essential, the passive and active mechanics within biological systems are crucial when considering the many nat...

    journal_title:Nature communications

    pub_type: 杂志文章,评审

    doi:10.1038/ncomms8418

    authors: Egan P,Sinko R,LeDuc PR,Keten S

    更新日期:2015-07-06 00:00:00

  • Integrative proteomics in prostate cancer uncovers robustness against genomic and transcriptomic aberrations during disease progression.

    abstract::To understand functional consequences of genetic and transcriptional aberrations in prostate cancer, the proteomic changes during disease formation and progression need to be revealed. Here we report high-throughput mass spectrometry on clinical tissue samples of benign prostatic hyperplasia (BPH), untreated primary p...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03573-6

    authors: Latonen L,Afyounian E,Jylhä A,Nättinen J,Aapola U,Annala M,Kivinummi KK,Tammela TTL,Beuerman RW,Uusitalo H,Nykter M,Visakorpi T

    更新日期:2018-03-21 00:00:00

  • A randomized trial evaluating virus-specific effects of a combination probiotic in children with acute gastroenteritis.

    abstract::Gastroenteritis accounts for nearly 500,000 deaths in children younger than 5 years annually. Although probiotics have been touted as having the potential to expedite diarrhea resolution, recent clinical trials question their effectiveness. A potential explanation is a shift in pathogens following the introduction of ...

    journal_title:Nature communications

    pub_type: 杂志文章,多中心研究,随机对照试验

    doi:10.1038/s41467-020-16308-3

    authors: Freedman SB,Xie J,Nettel-Aguirre A,Pang XL,Chui L,Williamson-Urquhart S,Schnadower D,Schuh S,Sherman PM,Lee BE,Gouin S,Farion KJ,Poonai N,Hurley KF,Qiu Y,Ghandi B,Lloyd C,Finkelstein Y,Pediatric Emergency Research Can

    更新日期:2020-05-21 00:00:00

  • The structure of Zika virus NS5 reveals a conserved domain conformation.

    abstract::The recent outbreak of Zika virus (ZIKV) has imposed a serious threat to public health. Here we report the crystal structure of the ZIKV NS5 protein in complex with S-adenosyl-L-homocysteine, in which the tandem methyltransferase (MTase) and RNA-dependent RNA polymerase (RdRp) domains stack into one of the two alterna...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14763

    authors: Wang B,Tan XF,Thurmond S,Zhang ZM,Lin A,Hai R,Song J

    更新日期:2017-03-27 00:00:00

  • Protein kinase D regulates positive selection of CD4+ thymocytes through phosphorylation of SHP-1.

    abstract::Thymic selection shapes an appropriate T cell antigen receptor (TCR) repertoire during T cell development. Here, we show that a serine/threonine kinase, protein kinase D (PKD), is crucial for thymocyte positive selection. In T cell-specific PKD-deficient (PKD2/PKD3 double-deficient) mice, the generation of CD4 single ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12756

    authors: Ishikawa E,Kosako H,Yasuda T,Ohmuraya M,Araki K,Kurosaki T,Saito T,Yamasaki S

    更新日期:2016-09-27 00:00:00

  • Inhibition of Ebola virus glycoprotein-mediated cytotoxicity by targeting its transmembrane domain and cholesterol.

    abstract::The high pathogenicity of the Ebola virus reflects multiple concurrent processes on infection. Among other important determinants, Ebola fusogenic glycoprotein (GP) has been associated with the detachment of infected cells and eventually leads to vascular leakage and haemorrhagic fever. Here we report that the membran...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8688

    authors: Hacke M,Björkholm P,Hellwig A,Himmels P,Ruiz de Almodóvar C,Brügger B,Wieland F,Ernst AM

    更新日期:2015-07-09 00:00:00

  • Prevailing oxic environments in the Pacific Ocean during the mid-Cretaceous Oceanic anoxic event 2.

    abstract::The occurrence of Oceanic Anoxic Event 2 (OAE2) 94 million years ago is considered to be one of the largest carbon cycle perturbations in the Earth's history. The marked increase in the spatial extent of the anoxic conditions in the world's oceans associated with OAE2 resulted in the mass accumulation of organic-rich ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1233

    authors: Takashima R,Nishi H,Yamanaka T,Tomosugi T,Fernando AG,Tanabe K,Moriya K,Kawabe F,Hayashi K

    更新日期:2011-01-01 00:00:00

  • Stereoselective synthesis of medium lactams enabled by metal-free hydroalkoxylation/stereospecific [1,3]-rearrangement.

    abstract::Rearrangement reactions have attracted considerable interest over the past decades due to their high bond-forming efficiency and atom economy in the construction of complex organic architectures. In contrast to the well-established [3,3]-rearrangement, [1,3] O-to-C rearrangement has been far less vigorously investigat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11245-2

    authors: Zhou B,Zhang YQ,Zhang K,Yang MY,Chen YB,Li Y,Peng Q,Zhu SF,Zhou QL,Ye LW

    更新日期:2019-07-19 00:00:00

  • A temporary indwelling intravascular aphaeretic system for in vivo enrichment of circulating tumor cells.

    abstract::Circulating tumor cells (CTCs) have become an established biomarker for prognosis in patients with various carcinomas. However, current ex vivo CTC isolation technologies rely on small blood volumes from a single venipuncture limiting the number of captured CTCs. This produces statistical variability and inaccurate re...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09439-9

    authors: Kim TH,Wang Y,Oliver CR,Thamm DH,Cooling L,Paoletti C,Smith KJ,Nagrath S,Hayes DF

    更新日期:2019-04-01 00:00:00

  • Synthesis and assembly of extended quintulene.

    abstract::Quintulene, a non-graphitic cycloarene with fivefold symmetry, has remained synthetically elusive due to its high molecular strain originating from its curved structure. Here we report the construction of extended quintulene, which was unambiguously characterized by mass and NMR spectroscopy. The extended quintulene r...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17691-7

    authors: Hou H,Zhao XJ,Tang C,Ju YY,Deng ZY,Wang XR,Feng LB,Lin DH,Hou X,Narita A,Müllen K,Tan YZ

    更新日期:2020-08-07 00:00:00

  • A surface-stabilized ozonide triggers bromide oxidation at the aqueous solution-vapour interface.

    abstract::Oxidation of bromide in aqueous environments initiates the formation of molecular halogen compounds, which is important for the global tropospheric ozone budget. In the aqueous bulk, oxidation of bromide by ozone involves a [Br•OOO-] complex as intermediate. Here we report liquid jet X-ray photoelectron spectroscopy m...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00823-x

    authors: Artiglia L,Edebeli J,Orlando F,Chen S,Lee MT,Corral Arroyo P,Gilgen A,Bartels-Rausch T,Kleibert A,Vazdar M,Andres Carignano M,Francisco JS,Shepson PB,Gladich I,Ammann M

    更新日期:2017-09-26 00:00:00

  • Copolymer dielectrics with balanced chain-packing density and surface polarity for high-performance flexible organic electronics.

    abstract::The ever-increasing demand for flexible electronics calls for the development of low-voltage and high-mobility organic thin-film transistors (OTFTs) that can be integrated into emerging display and labeling technologies. Polymer dielectrics with comprehensive and balanced dielectric properties (i.e., a good balance be...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04665-z

    authors: Ji D,Li T,Zou Y,Chu M,Zhou K,Liu J,Tian G,Zhang Z,Zhang X,Li L,Wu D,Dong H,Miao Q,Fuchs H,Hu W

    更新日期:2018-06-14 00:00:00

  • Overcoming mcr-1 mediated colistin resistance with colistin in combination with other antibiotics.

    abstract::Plasmid-borne colistin resistance mediated by mcr-1 may contribute to the dissemination of pan-resistant Gram-negative bacteria. Here, we show that mcr-1 confers resistance to colistin-induced lysis and bacterial cell death, but provides minimal protection from the ability of colistin to disrupt the Gram-negative oute...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02875-z

    authors: MacNair CR,Stokes JM,Carfrae LA,Fiebig-Comyn AA,Coombes BK,Mulvey MR,Brown ED

    更新日期:2018-01-31 00:00:00

  • Carbon monoxide in an extremely metal-poor galaxy.

    abstract::Extremely metal-poor galaxies with metallicity below 10% of the solar value in the local universe are the best analogues to investigating the interstellar medium at a quasi-primitive environment in the early universe. In spite of the ongoing formation of stars in these galaxies, the presence of molecular gas (which is...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13789

    authors: Shi Y,Wang J,Zhang ZY,Gao Y,Hao CN,Xia XY,Gu Q

    更新日期:2016-12-09 00:00:00

  • Efficient and stable sky-blue delayed fluorescence organic light-emitting diodes with CIEy below 0.4.

    abstract::Organic light-emitting diodes utilizing thermally activated delayed fluorescence is a potential solution for achieving stable blue devices. Sky-blue devices (CIEy < 0.4) with high stability and high external quantum efficiency (>15%) at 1000 cd m-2 based on either delayed fluorescence or phosphorescence are still limi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07482-6

    authors: Chan CY,Tanaka M,Nakanotani H,Adachi C

    更新日期:2018-11-28 00:00:00

  • BrlR from Pseudomonas aeruginosa is a receptor for both cyclic di-GMP and pyocyanin.

    abstract::The virulence factor pyocyanin and the intracellular second messenger cyclic diguanylate monophosphate (c-di-GMP) play key roles in regulating biofilm formation and multi-drug efflux pump expression in Pseudomonas aeruginosa. However, the crosstalk between these two signaling pathways remains unclear. Here we show tha...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05004-y

    authors: Wang F,He Q,Yin J,Xu S,Hu W,Gu L

    更新日期:2018-07-02 00:00:00

  • Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility.

    abstract::Single-nucleotide variants that underlie phenotypic variation can affect chromatin occupancy of transcription factors (TFs). To delineate determinants of in vivo TF binding and chromatin accessibility, we introduce an approach that compares ChIP-seq and DNase-seq data sets from genetically divergent murine erythroid c...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03082-6

    authors: Behera V,Evans P,Face CJ,Hamagami N,Sankaranarayanan L,Keller CA,Giardine B,Tan K,Hardison RC,Shi J,Blobel GA

    更新日期:2018-02-22 00:00:00