High-performance reconstruction of microscopic force fields from Brownian trajectories.

Abstract:

:The accurate measurement of microscopic force fields is crucial in many branches of science and technology, from biophotonics and mechanobiology to microscopy and optomechanics. These forces are often probed by analysing their influence on the motion of Brownian particles. Here we introduce a powerful algorithm for microscopic force reconstruction via maximum-likelihood-estimator analysis (FORMA) to retrieve the force field acting on a Brownian particle from the analysis of its displacements. FORMA estimates accurately the conservative and non-conservative components of the force field with important advantages over established techniques, being parameter-free, requiring ten-fold less data and executing orders-of-magnitude faster. We demonstrate FORMA performance using optical tweezers, showing how, outperforming other available techniques, it can identify and characterise stable and unstable equilibrium points in generic force fields. Thanks to its high performance, FORMA can accelerate the development of microscopic and nanoscopic force transducers for physics, biology and engineering.

journal_name

Nat Commun

journal_title

Nature communications

authors

Pérez García L,Donlucas Pérez J,Volpe G,V Arzola A,Volpe G

doi

10.1038/s41467-018-07437-x

subject

Has Abstract

pub_date

2018-12-04 00:00:00

pages

5166

issue

1

issn

2041-1723

pii

10.1038/s41467-018-07437-x

journal_volume

9

pub_type

杂志文章
  • CTC1-STN1 terminates telomerase while STN1-TEN1 enables C-strand synthesis during telomere replication in colon cancer cells.

    abstract::Telomerase elongates the telomeric G-strand to prevent telomere shortening through conventional DNA replication. However, synthesis of the complementary C-strand by DNA polymerase α is also required to maintain telomere length. Polymerase α cannot perform this role without the ssDNA binding complex CST (CTC1-STN1-TEN1...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05154-z

    authors: Feng X,Hsu SJ,Bhattacharjee A,Wang Y,Diao J,Price CM

    更新日期:2018-07-19 00:00:00

  • Plant macrofossil evidence for an early onset of the Holocene summer thermal maximum in northernmost Europe.

    abstract::Holocene summer temperature reconstructions from northern Europe based on sedimentary pollen records suggest an onset of peak summer warmth around 9,000 years ago. However, pollen-based temperature reconstructions are largely driven by changes in the proportions of tree taxa, and thus the early-Holocene warming signal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7809

    authors: Väliranta M,Salonen JS,Heikkilä M,Amon L,Helmens K,Klimaschewski A,Kuhry P,Kultti S,Poska A,Shala S,Veski S,Birks HH

    更新日期:2015-04-10 00:00:00

  • Critical speeding-up in the magnetoelectric response of spin-ice near its monopole liquid-gas transition.

    abstract::Competing interactions in the so-called spin-ice compounds stabilize a frustrated ground state with finite zero-point entropy and, interestingly, emergent magnetic monopole excitations. The properties of these monopoles are at the focus of recent research with particular emphasis on their quantum dynamics. It is predi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5853

    authors: Grams CP,Valldor M,Garst M,Hemberger J

    更新日期:2014-09-04 00:00:00

  • Selection of GalNAc-conjugated siRNAs with limited off-target-driven rat hepatotoxicity.

    abstract::Small interfering RNAs (siRNAs) conjugated to a trivalent N-acetylgalactosamine (GalNAc) ligand are being evaluated in investigational clinical studies for a variety of indications. The typical development candidate selection process includes evaluation of the most active compounds for toxicity in rats at pharmacologi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02989-4

    authors: Janas MM,Schlegel MK,Harbison CE,Yilmaz VO,Jiang Y,Parmar R,Zlatev I,Castoreno A,Xu H,Shulga-Morskaya S,Rajeev KG,Manoharan M,Keirstead ND,Maier MA,Jadhav V

    更新日期:2018-02-19 00:00:00

  • TGFβ blocks IFNα/β release and tumor rejection in spontaneous mammary tumors.

    abstract::Type I interferons (IFN) are being rediscovered as potent anti-tumoral agents. Activation of the STimulator of INterferon Genes (STING) by DMXAA (5,6-dimethylxanthenone-4-acetic acid) can induce strong production of IFNα/β and rejection of transplanted primary tumors. In the present study, we address whether targeting...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11998-w

    authors: Guerin MV,Regnier F,Feuillet V,Vimeux L,Weiss JM,Bismuth G,Altan-Bonnet G,Guilbert T,Thoreau M,Finisguerra V,Donnadieu E,Trautmann A,Bercovici N

    更新日期:2019-09-11 00:00:00

  • Membrane cholesterol access into a G-protein-coupled receptor.

    abstract::Cholesterol is a key component of cell membranes with a proven modulatory role on the function and ligand-binding properties of G-protein-coupled receptors (GPCRs). Crystal structures of prototypical GPCRs such as the adenosine A2A receptor (A2AR) have confirmed that cholesterol finds stable binding sites at the recep...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14505

    authors: Guixà-González R,Albasanz JL,Rodriguez-Espigares I,Pastor M,Sanz F,Martí-Solano M,Manna M,Martinez-Seara H,Hildebrand PW,Martín M,Selent J

    更新日期:2017-02-21 00:00:00

  • Organocatalytic enantio- and diastereoselective cycloetherification via dynamic kinetic resolution of chiral cyanohydrins.

    abstract::Enantioselective approaches to synthesize six-membered oxacycles with multiple stereogenic centres are in high demand to enable the discovery of new therapeutic agents. Here we present a concise organocatalytic cycloetherification for the highly enantio- and diastereoselective synthesis of tetrahydropyrans involving s...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01099-x

    authors: Yoneda N,Fujii Y,Matsumoto A,Asano K,Matsubara S

    更新日期:2017-11-09 00:00:00

  • Synchronous precessional motion of multiple domain walls in a ferromagnetic nanowire by perpendicular field pulses.

    abstract::Magnetic storage and logic devices based on magnetic domain wall motion rely on the precise and synchronous displacement of multiple domain walls. The conventional approach using magnetic fields does not allow for the synchronous motion of multiple domains. As an alternative method, synchronous current-induced domain ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4429

    authors: Kim JS,Mawass MA,Bisig A,Krüger B,Reeve RM,Schulz T,Büttner F,Yoon J,You CY,Weigand M,Stoll H,Schütz G,Swagten HJ,Koopmans B,Eisebitt S,Kläui M

    更新日期:2014-03-24 00:00:00

  • Origin of pressure-induced crystallization of Ce75Al25 metallic glass.

    abstract::Phase transitions in amorphous alloys under pressure are an important fundamental problem. Here we report on a first-principles study that reproduces the recently discovered pressure-induced crystallization of amorphous Ce100-xAlx (x<25) alloys and reveals an atomistic transformation mechanism. Contrary to common beli...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7493

    authors: Wu M,Tse JS,Wang SY,Wang CZ,Jiang JZ

    更新日期:2015-03-09 00:00:00

  • An electrostatic mechanism for Ca(2+)-mediated regulation of gap junction channels.

    abstract::Gap junction channels mediate intercellular signalling that is crucial in tissue development, homeostasis and pathologic states such as cardiac arrhythmias, cancer and trauma. To explore the mechanism by which Ca(2+) blocks intercellular communication during tissue injury, we determined the X-ray crystal structures of...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9770

    authors: Bennett BC,Purdy MD,Baker KA,Acharya C,McIntire WE,Stevens RC,Zhang Q,Harris AL,Abagyan R,Yeager M

    更新日期:2016-01-12 00:00:00

  • The 3.3 Å structure of a plant geminivirus using cryo-EM.

    abstract::Geminiviruses are major plant pathogens that threaten food security globally. They have a unique architecture built from two incomplete icosahedral particles, fused to form a geminate capsid. However, despite their importance to agricultural economies and fundamental biological interest, the details of how this is rea...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04793-6

    authors: Hesketh EL,Saunders K,Fisher C,Potze J,Stanley J,Lomonossoff GP,Ranson NA

    更新日期:2018-06-18 00:00:00

  • Ecscr regulates insulin sensitivity and predisposition to obesity by modulating endothelial cell functions.

    abstract::Insulin resistance is closely associated with obesity and is one of the earliest symptoms of type-2 diabetes. Endothelial cells are involved in the pathogenesis of insulin resistance through their role in insulin delivery and adipose tissue angiogenesis. Here we show that Ecscr (endothelial cell surface expressed chem...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3389

    authors: Akakabe Y,Koide M,Kitamura Y,Matsuo K,Ueyama T,Matoba S,Yamada H,Miyata K,Oike Y,Ikeda K

    更新日期:2013-01-01 00:00:00

  • Regional boreal biodiversity peaks at intermediate human disturbance.

    abstract::The worldwide biodiversity crisis has intensified the need to better understand how biodiversity and human disturbance are related. The 'intermediate disturbance hypothesis' suggests that disturbance regimes generate predictable non-linear patterns in species richness. Evidence often contradicts intermediate disturban...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2145

    authors: Mayor SJ,Cahill JF Jr,He F,Sólymos P,Boutin S

    更新日期:2012-01-01 00:00:00

  • Impact of fat mass and distribution on lipid turnover in human adipose tissue.

    abstract::Differences in white adipose tissue (WAT) lipid turnover between the visceral (vWAT) and subcutaneous (sWAT) depots may cause metabolic complications in obesity. Here we compare triglyceride age and, thereby, triglyceride turnover in vWAT and sWAT biopsies from 346 individuals and find that subcutaneous triglyceride a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15253

    authors: Spalding KL,Bernard S,Näslund E,Salehpour M,Possnert G,Appelsved L,Fu KY,Alkass K,Druid H,Thorell A,Rydén M,Arner P

    更新日期:2017-05-23 00:00:00

  • Cavity piezo-mechanics for superconducting-nanophotonic quantum interface.

    abstract::Hybrid quantum systems are essential for the realization of distributed quantum networks. In particular, piezo-mechanics operating at typical superconducting qubit frequencies features low thermal excitations, and offers an appealing platform to bridge superconducting quantum processors and optical telecommunication c...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17053-3

    authors: Han X,Fu W,Zhong C,Zou CL,Xu Y,Sayem AA,Xu M,Wang S,Cheng R,Jiang L,Tang HX

    更新日期:2020-06-26 00:00:00

  • Targeted diversity generation by intraterrestrial archaea and archaeal viruses.

    abstract::In the evolutionary arms race between microbes, their parasites, and their neighbours, the capacity for rapid protein diversification is a potent weapon. Diversity-generating retroelements (DGRs) use mutagenic reverse transcription and retrohoming to generate myriad variants of a target gene. Originally discovered in ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7585

    authors: Paul BG,Bagby SC,Czornyj E,Arambula D,Handa S,Sczyrba A,Ghosh P,Miller JF,Valentine DL

    更新日期:2015-03-23 00:00:00

  • Elucidation of the biosynthesis of carnosic acid and its reconstitution in yeast.

    abstract::Rosemary extracts containing the phenolic diterpenes carnosic acid and its derivative carnosol are approved food additives used in an increasingly wide range of products to enhance shelf-life, thanks to their high anti-oxidant activity. We describe here the elucidation of the complete biosynthetic pathway of carnosic ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12942

    authors: Scheler U,Brandt W,Porzel A,Rothe K,Manzano D,Božić D,Papaefthimiou D,Balcke GU,Henning A,Lohse S,Marillonnet S,Kanellis AK,Ferrer A,Tissier A

    更新日期:2016-10-05 00:00:00

  • A glycoprotein B-neutralizing antibody structure at 2.8 Å uncovers a critical domain for herpesvirus fusion initiation.

    abstract::Members of the Herpesviridae, including the medically important alphaherpesvirus varicella-zoster virus (VZV), induce fusion of the virion envelope with cell membranes during entry, and between cells to form polykaryocytes in infected tissues. The conserved glycoproteins, gB, gH and gL, are the core functional protein...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17911-0

    authors: Oliver SL,Xing Y,Chen DH,Roh SH,Pintilie GD,Bushnell DA,Sommer MH,Yang E,Carfi A,Chiu W,Arvin AM

    更新日期:2020-08-18 00:00:00

  • Biogenic volatile release from permafrost thaw is determined by the soil microbial sink.

    abstract::Warming in the Arctic accelerates thawing of permafrost-affected soils, which leads to a release of greenhouse gases to the atmosphere. We do not know whether permafrost thaw also releases non-methane volatile organic compounds that can contribute to both negative and positive radiative forcing on climate. Here we sho...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05824-y

    authors: Kramshøj M,Albers CN,Holst T,Holzinger R,Elberling B,Rinnan R

    更新日期:2018-08-24 00:00:00

  • A transient self-assembling self-replicator.

    abstract::Developing physical models of complex dynamic systems showing emergent behaviour is key to informing on persistence and replication in biology, how living matter emerges from chemistry, and how to design systems with new properties. Herein we report a fully synthetic small molecule system in which a surfactant replica...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04670-2

    authors: Colomer I,Morrow SM,Fletcher SP

    更新日期:2018-06-08 00:00:00

  • Improved GPCR ligands from nanobody tethering.

    abstract::Antibodies conjugated to bioactive compounds allow targeted delivery of therapeutics to cell types of choice based on that antibody's specificity. Here we develop a new type of conjugate that consists of a nanobody and a peptidic ligand for a G protein-coupled receptor (GPCR), fused via their C-termini. We address act...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15884-8

    authors: Cheloha RW,Fischer FA,Woodham AW,Daley E,Suminski N,Gardella TJ,Ploegh HL

    更新日期:2020-04-29 00:00:00

  • Kinetic modulation of a disordered protein domain by phosphorylation.

    abstract::Phosphorylation is a major post-translational mechanism of regulation that frequently targets disordered protein domains, but it remains unclear how phosphorylation modulates disordered states of proteins. Here we determine the kinetics and energetics of a disordered protein domain the kinase-inducible domain (KID) of...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6272

    authors: Stanley N,Esteban-Martín S,De Fabritiis G

    更新日期:2014-10-28 00:00:00

  • Publisher Correction: Unveiling the Re effect in Ni-based single crystal superalloys.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-020-14820-0

    authors: Wu X,Makineni SK,Liebscher CH,Dehm G,Mianroodi JR,Shanthraj P,Svendsen B,Bürger D,Eggeler G,Raabe D,Gault B

    更新日期:2020-02-21 00:00:00

  • Unveiling phonons in a molecular qubit with four-dimensional inelastic neutron scattering and density functional theory.

    abstract::Phonons are the main source of relaxation in molecular nanomagnets, and different mechanisms have been proposed in order to explain the wealth of experimental findings. However, very limited experimental investigations on phonons in these systems have been performed so far, yielding no information about their dispersi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15475-7

    authors: Garlatti E,Tesi L,Lunghi A,Atzori M,Voneshen DJ,Santini P,Sanvito S,Guidi T,Sessoli R,Carretta S

    更新日期:2020-04-09 00:00:00

  • Constant-intensity waves and their modulation instability in non-Hermitian potentials.

    abstract::In all of the diverse areas of science where waves play an important role, one of the most fundamental solutions of the corresponding wave equation is a stationary wave with constant intensity. The most familiar example is that of a plane wave propagating in free space. In the presence of any Hermitian potential, a wa...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8257

    authors: Makris KG,Musslimani ZH,Christodoulides DN,Rotter S

    更新日期:2015-07-08 00:00:00

  • A role for actin flexibility in thin filament-mediated contractile regulation and myopathy.

    abstract::Striated muscle contraction is regulated by the translocation of troponin-tropomyosin strands over the thin filament surface. Relaxation relies partly on highly-favorable, conformation-dependent electrostatic contacts between actin and tropomyosin, which position tropomyosin such that it impedes actomyosin association...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15922-5

    authors: Viswanathan MC,Schmidt W,Franz P,Rynkiewicz MJ,Newhard CS,Madan A,Lehman W,Swank DM,Preller M,Cammarato A

    更新日期:2020-05-15 00:00:00

  • Origin of the crossover from polarons to Fermi liquids in transition metal oxides.

    abstract::Transition metal oxides host a wealth of exotic phenomena ranging from charge, orbital and magnetic order to nontrivial topological phases and superconductivity. In order to translate these unique materials properties into device functionalities these materials must be doped; however, the nature of carriers and their ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15769

    authors: Verdi C,Caruso F,Giustino F

    更新日期:2017-06-08 00:00:00

  • Few-femtosecond passage of conical intersections in the benzene cation.

    abstract::Observing the crucial first few femtoseconds of photochemical reactions requires tools typically not available in the femtochemistry toolkit. Such dynamics are now within reach with the instruments provided by attosecond science. Here, we apply experimental and theoretical methods to assess the ultrafast nonadiabatic ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01133-y

    authors: Galbraith MCE,Scheit S,Golubev NV,Reitsma G,Zhavoronkov N,Despré V,Lépine F,Kuleff AI,Vrakking MJJ,Kornilov O,Köppel H,Mikosch J

    更新日期:2017-10-18 00:00:00

  • Elastic spheres can walk on water.

    abstract::Incited by public fascination and engineering application, water-skipping of rigid stones and spheres has received considerable study. While these objects can be coaxed to ricochet, elastic spheres demonstrate superior water-skipping ability, but little is known about the effect of large material compliance on water i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10551

    authors: Belden J,Hurd RC,Jandron MA,Bower AF,Truscott TT

    更新日期:2016-02-04 00:00:00

  • Quantitative modeling predicts mechanistic links between pre-treatment microbiome composition and metronidazole efficacy in bacterial vaginosis.

    abstract::Bacterial vaginosis is a condition associated with adverse reproductive outcomes and characterized by a shift from a Lactobacillus-dominant vaginal microbiota to a polymicrobial microbiota, consistently colonized by strains of Gardnerella vaginalis. Metronidazole is the first-line treatment; however, treatment failure...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19880-w

    authors: Lee CY,Cheu RK,Lemke MM,Gustin AT,France MT,Hampel B,Thurman AR,Doncel GF,Ravel J,Klatt NR,Arnold KB

    更新日期:2020-12-01 00:00:00