Building a local community of practice in scientific programming for life scientists.

abstract：:In some recent studies, a view emerged that stochastic dynamics governing the switching of cells from one differentiation state to another could be characterized by a peak in gene expression variability at the point of fate commitment. We have tested this hypothesis at the single-cell level by analyzing primary chicke...

journal_title：PLoS biology

authors： Richard A,Boullu L,Herbach U,Bonnafoux A,Morin V,Vallin E,Guillemin A,Papili Gao N,Gunawan R,Cosette J,Arnaud O,Kupiec JJ,Espinasse T,Gonin-Giraud S,Gandrillon O

更新日期：2016-12-27 00:00:00

abstract：:There is a widespread concern about the direct and indirect effects of industrial fisheries; this concern is particularly pertinent for so-called "marine protected areas" (MPAs), which should be safeguarded by national and international law. The intertidal flats of the Dutch Wadden Sea are a State Nature Monument and ...

journal_title：PLoS biology

authors： van Gils JA,Piersma T,Dekinga A,Spaans B,Kraan C

更新日期：2006-11-01 00:00:00

abstract：:From bacteria to humans, individual cells within isogenic populations can show significant variation in stress tolerance, but the nature of this heterogeneity is not clear. To investigate this, we used single-cell RNA sequencing to quantify transcript heterogeneity in single Saccharomyces cerevisiae cells treated with...

journal_title：PLoS biology

authors： Gasch AP,Yu FB,Hose J,Escalante LE,Place M,Bacher R,Kanbar J,Ciobanu D,Sandor L,Grigoriev IV,Kendziorski C,Quake SR,McClean MN

更新日期：2017-12-14 00:00:00

abstract：:Over the last decades, researchers have characterized a set of "clock genes" that drive daily rhythms in physiology and behavior. This arduous work has yielded results with far-reaching consequences in metabolic, psychiatric, and neoplastic disorders. Recent attempts to expand our understanding of circadian regulation...

journal_title：PLoS biology

authors： Anafi RC,Lee Y,Sato TK,Venkataraman A,Ramanathan C,Kavakli IH,Hughes ME,Baggs JE,Growe J,Liu AC,Kim J,Hogenesch JB

更新日期：2014-04-15 00:00:00

abstract：:The genetic code provides the translation table necessary to transform the information contained in DNA into the language of proteins. In this table, a correspondence between each codon and each amino acid is established: tRNA is the main adaptor that links the two. Although the genetic code is nearly universal, sever...

journal_title：PLoS biology

authors： Abascal F,Posada D,Knight RD,Zardoya R

更新日期：2006-05-01 00:00:00

abstract：:Patterned spontaneous activity in the developing retina is necessary to drive synaptic refinement in the lateral geniculate nucleus (LGN). Using perforated patch recordings from neurons in LGN slices during the period of eye segregation, we examine how such burst-based activity can instruct this refinement. Retinogeni...

journal_title：PLoS biology

authors： Butts DA,Kanold PO,Shatz CJ

更新日期：2007-03-01 00:00:00

abstract：:Eukaryotic cells contain several unconventional poly(A) polymerases in addition to the canonical enzymes responsible for the synthesis of poly(A) tails of nuclear messenger RNA precursors. The yeast protein Trf4p has been implicated in a quality control pathway that leads to the polyadenylation and subsequent exosome-...

journal_title：PLoS biology

authors： Vanácová S,Wolf J,Martin G,Blank D,Dettwiler S,Friedlein A,Langen H,Keith G,Keller W

更新日期：2005-06-01 00:00:00

abstract：:[This corrects the article DOI: 10.1371/journal.pbio.2006145.]. ...

journal_title：PLoS biology

authors： Saran AR,Kalinowska D,Oh S,Janknecht R,DiTacchio L

更新日期：2019-08-21 00:00:00

abstract：:Tumors develop through multiple stages, implicating multiple effectors, but the tools to assess how candidate genes contribute to stepwise tumor progression have been limited. We have developed a novel system in which progression of phenotypes in a mouse model of pancreatic islet cell tumorigenesis can be used to meas...

journal_title：PLoS biology

authors： Du YC,Lewis BC,Hanahan D,Varmus H

更新日期：2007-10-16 00:00:00

abstract：:Most models of cancer cell population expansion assume exponential growth kinetics at low cell densities, with deviations to account for observed slowing of growth rate only at higher densities due to limited resources such as space and nutrients. However, recent preclinical and clinical observations of tumor initiati...

journal_title：PLoS biology

authors： Johnson KE,Howard G,Mo W,Strasser MK,Lima EABF,Huang S,Brock A

更新日期：2019-08-05 00:00:00

abstract：:Over the past 3 decades, in a series of studies on some of the most extensively studied toxic chemicals and pollutants, scientists have found that the amount of toxic chemical linked with the development of a disease or death-which is central to determining "safe" or "hazardous" levels-is proportionately greater at th...

journal_title：PLoS biology

authors： Lanphear BP

更新日期：2017-12-19 00:00:00

abstract：:During gestation, uterine smooth muscle cells transition from a state of quiescence to one of contractility, but the molecular mechanisms underlying this transition at a genomic level are not well-known. To better understand these events, we evaluated the epigenetic landscape of the mouse myometrium during the pregnan...

journal_title：PLoS biology

authors： Shchuka VM,Abatti LE,Hou H,Khader N,Dorogin A,Wilson MD,Shynlova O,Mitchell JA

更新日期：2020-07-15 00:00:00

abstract：:Proopiomelanocortin (POMC) neurons in the arcuate nucleus of the hypothalamus (ARC) respond to numerous hormonal and neural signals, resulting in changes in food intake. Here, we demonstrate that ARC POMC neurons express capsaicin-sensitive transient receptor potential vanilloid 1 receptor (TRPV1)-like receptors. To s...

journal_title：PLoS biology

authors： Jeong JH,Lee DK,Liu SM,Chua SC Jr,Schwartz GJ,Jo YH

更新日期：2018-04-24 00:00:00

abstract：:Animal welfare requires the adequate housing of animals to ensure health and well-being. The application of environmental enrichment is a way to improve the well-being of laboratory animals. However, it is important to know whether these enrichment items can be incorporated in experimental mouse husbandry without crea...

journal_title：PLoS biology

authors： André V,Gau C,Scheideler A,Aguilar-Pimentel JA,Amarie OV,Becker L,Garrett L,Hans W,Hölter SM,Janik D,Moreth K,Neff F,Östereicher M,Racz I,Rathkolb B,Rozman J,Bekeredjian R,Graw J,Klingenspor M,Klopstock T,Ollert M

更新日期：2018-04-16 00:00:00

abstract：:Seasonal influenza virus infections can cause significant morbidity and mortality, but the threat from the emergence of a new pandemic influenza strain might have potentially even more devastating consequences. As such, there is intense interest in isolating and characterizing potent neutralizing antibodies that targe...

journal_title：PLoS biology

authors： Turner HL,Pallesen J,Lang S,Bangaru S,Urata S,Li S,Cottrell CA,Bowman CA,Crowe JE Jr,Wilson IA,Ward AB

更新日期：2019-02-04 00:00:00

abstract：:Cell proliferation and programmed cell death are closely controlled during animal development. Proliferative stimuli generally also induce apoptosis, and anti-apoptotic factors are required to allow net cell proliferation. Genetic studies in Drosophila have led to identification of a number of genes that control both ...

journal_title：PLoS biology

authors： Hipfner DR,Cohen SM

更新日期：2003-11-01 00:00:00

abstract：:Mimivirus is the largest known virus whose genome and physical size are comparable to some small bacteria, blurring the boundary between a virus and a cell. Structural studies of Mimivirus have been difficult because of its size and long surface fibers. Here we report the use of enzymatic digestions to remove the surf...

journal_title：PLoS biology

authors： Xiao C,Kuznetsov YG,Sun S,Hafenstein SL,Kostyuchenko VA,Chipman PR,Suzan-Monti M,Raoult D,McPherson A,Rossmann MG

更新日期：2009-04-28 00:00:00

abstract：:The authors of "Relatedness, Conflict, and the Evolution of Eusociality" respond to objections raised by Martin Nowak and Benjamin Allen. ...

journal_title：PLoS biology

authors： Queller DC,Rong S,Liao X

更新日期：2015-04-24 00:00:00

abstract：:The development of axonal arbors is a critical step in the establishment of precise neural circuits, but relatively little is known about the mechanisms of axonal elaboration in the neocortex. We used in vivo two-photon time-lapse microscopy to image axons in the neocortex of green fluorescent protein-transgenic mice ...

journal_title：PLoS biology

authors： Portera-Cailliau C,Weimer RM,De Paola V,Caroni P,Svoboda K

更新日期：2005-08-01 00:00:00

abstract：:The gene encoding the transcriptional coactivator peroxisome proliferator-activated receptor-gamma coactivator-1alpha (PGC-1alpha) was targeted in mice. PGC-1alpha null (PGC-1alpha(-/-)) mice were viable. However, extensive phenotyping revealed multi-system abnormalities indicative of an abnormal energy metabolic phen...

journal_title：PLoS biology

authors： Leone TC,Lehman JJ,Finck BN,Schaeffer PJ,Wende AR,Boudina S,Courtois M,Wozniak DF,Sambandam N,Bernal-Mizrachi C,Chen Z,Holloszy JO,Medeiros DM,Schmidt RE,Saffitz JE,Abel ED,Semenkovich CF,Kelly DP

更新日期：2005-04-01 00:00:00

abstract：:A cell is a minifactory in which structures and molecules are assembled, rearranged, disassembled, packaged, sorted, and transported. Because cellular structures and molecules are invisible to the human eye, students often have difficulty conceptualizing the dynamic nature of cells that function at multiple scales acr...

journal_title：PLoS biology

authors： Reindl KM,White AR,Johnson C,Vender B,Slator BM,McClean P

更新日期：2015-04-09 00:00:00

abstract：:The p75 neurotrophin receptor, a member of the tumor necrosis factor receptor superfamily, is required as a co-receptor for the Nogo receptor (NgR) to mediate the activity of myelin-associated inhibitors such as Nogo, MAG, and OMgp. p45/NRH2/PLAIDD is a p75 homologue and contains a death domain (DD). Here we report th...

journal_title：PLoS biology

authors： Vilar M,Sung TC,Chen Z,García-Carpio I,Fernandez EM,Xu J,Riek R,Lee KF

更新日期：2014-08-05 00:00:00

abstract：:During the entry process, the human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein (Env) trimer undergoes a sequence of conformational changes triggered by both CD4 and coreceptor engagement. Resolving the conformation of these transient entry intermediates has proven challenging. Here, we fine-mapped the...

journal_title：PLoS biology

authors： Ivan B,Sun Z,Subbaraman H,Friedrich N,Trkola A

更新日期：2019-01-16 00:00:00

abstract：:This primer discusses a study from Bradley et al. in which changes in transcription factor binding between two Drosophila species are revealed by chromatin immunoprecipitation and high-throughput sequencing. ...

journal_title：PLoS biology

authors： Wittkopp PJ

更新日期：2010-03-23 00:00:00

abstract：:Hox transcription factors control a number of developmental processes with the help of the PBC class proteins. In vitro analyses have established that the formation of Hox/PBC complexes relies on a short conserved Hox protein motif called the hexapeptide (HX). This paradigm is at the basis of the vast majority of expe...

journal_title：PLoS biology

authors： Hudry B,Remacle S,Delfini MC,Rezsohazy R,Graba Y,Merabet S

更新日期：2012-01-01 00:00:00

abstract：:Pruning that selectively eliminates unnecessary axons/dendrites is crucial for sculpting the nervous system during development. During Drosophila metamorphosis, dendrite arborization neurons, ddaCs, selectively prune their larval dendrites in response to the steroid hormone ecdysone, whereas mushroom body γ neurons sp...

journal_title：PLoS biology

authors： Wong JJ,Li S,Lim EK,Wang Y,Wang C,Zhang H,Kirilly D,Wu C,Liou YC,Wang H,Yu F

更新日期：2013-09-01 00:00:00

abstract：:Protein kinase B (PKB/Akt) belongs to the AGC superfamily of related serine/threonine protein kinases. It is a key regulator downstream of various growth factors and hormones and is involved in malignant transformation and chemo-resistance. Full-length PKB protein has not been crystallised, thus studying the molecular...

journal_title：PLoS biology

authors： Calleja V,Laguerre M,Parker PJ,Larijani B

更新日期：2009-01-20 00:00:00

abstract：:[This corrects the article DOI: 10.1371/journal.pbio.2002794.]. ...

journal_title：PLoS biology

authors： Obleser J,Henry MJ,Lakatos P

更新日期：2017-11-01 00:00:00

abstract：:Malaria parasites possess the remarkable ability to maintain chronic infections that fail to elicit a protective immune response, characteristics that have stymied vaccine development and cause people living in endemic regions to remain at risk of malaria despite previous exposure to the disease. These traits stem fro...

journal_title：PLoS biology

authors： Zhang X,Alexander N,Leonardi I,Mason C,Kirkman LA,Deitsch KW

更新日期：2019-05-13 00:00:00

abstract：:Cell differentiation is remarkably stable but can be reversed by somatic cell nuclear transfer, cell fusion, and iPS. Nuclear transfer to amphibian oocytes provides a special opportunity to test transcriptional reprogramming without cell division. We show here that, after nuclear transfer to amphibian oocytes, mitotic...

journal_title：PLoS biology

authors： Halley-Stott RP,Jullien J,Pasque V,Gurdon J

更新日期：2014-07-29 00:00:00