Mesoscale structure, mechanics, and transport properties of source rocks' organic pore networks.

Abstract:

:Organic matter is responsible for the generation of hydrocarbons during the thermal maturation of source rock formation. This geochemical process engenders a network of organic hosted pores that governs the flow of hydrocarbons from the organic matter to fractures created during the stimulation of production wells. Therefore, it can be reasonably assumed that predictions of potentially recoverable confined hydrocarbons depend on the geometry of this pore network. Here, we analyze mesoscale structures of three organic porous networks at different thermal maturities. We use electron tomography with subnanometric resolution to characterize their morphology and topology. Our 3D reconstructions confirm the formation of nanopores and reveal increasingly tortuous and connected pore networks in the process of thermal maturation. We then turn the binarized reconstructions into lattice models including information from atomistic simulations to derive mechanical and confined fluid transport properties. Specifically, we highlight the influence of adsorbed fluids on the elastic response. The resulting elastic energy concentrations are localized at the vicinity of macropores at low maturity whereas these concentrations present more homogeneous distributions at higher thermal maturities, due to pores' topology. The lattice models finally allow us to capture the effect of sorption on diffusion mechanisms with a sole input of network geometry. Eventually, we corroborate the dominant impact of diffusion occurring within the connected nanopores, which constitute the limiting factor of confined hydrocarbon transport in source rocks.

authors

Berthonneau J,Obliger A,Valdenaire PL,Grauby O,Ferry D,Chaudanson D,Levitz P,Kim JJ,Ulm FJ,Pellenq RJ

doi

10.1073/pnas.1808402115

subject

Has Abstract

pub_date

2018-12-04 00:00:00

pages

12365-12370

issue

49

eissn

0027-8424

issn

1091-6490

pii

1808402115

journal_volume

115

pub_type

杂志文章
  • Simple and complex nuclear loci created by newly transferred chloroplast DNA in tobacco.

    abstract::Transfer of organelle DNA into the nuclear genome has been significant in eukaryotic evolution, because it appears to be the origin of many nuclear genes. Most studies on organelle DNA transfer have been restricted to evolutionary events but experimental systems recently became available to monitor the process in real...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0400853101

    authors: Huang CY,Ayliffe MA,Timmis JN

    更新日期:2004-06-29 00:00:00

  • Pathogenic polyglutamine proteins cause dendrite defects associated with specific actin cytoskeletal alterations in Drosophila.

    abstract::Whereas the neurodegeneration associated with various polyglutamine (polyQ) diseases has prompted extensive studies of polyQ-induced cell death, the neuronal loss that typically appears during late stages of the diseases may not account for the preceding movement and mental disorders. The cellular basis for polyQ-indu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1113573108

    authors: Lee SB,Bagley JA,Lee HY,Jan LY,Jan YN

    更新日期:2011-10-04 00:00:00

  • A colchicine-sensitive uptake system in Morris hepatomas.

    abstract::The interference of microtubular disruptors with the uptake of amino acids and other low molecular weight substrates has been studied in Morris hepatomas, host liver, and regenerating liver. Colchicine inhibits amino acid transport (alpha-aminoisobutyric acid, L-methionine, and L-leucine) in hepatomas by 59-98% wherea...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.77.9.5282

    authors: Tauber R,Reutter W

    更新日期:1980-09-01 00:00:00

  • Functional expression and photoaffinity labeling of a cloned P2U purinergic receptor.

    abstract::ATP and UTP can function as extracellular signaling molecules by activating plasma membrane receptors termed P2 purinergic receptors. In the present study a P2U receptor cDNA has been expressed in K-562 human leukemia cells, one of the few available mammalian cell lines that lacks an endogenous P2U receptor. In stably...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.22.10449

    authors: Erb L,Lustig KD,Sullivan DM,Turner JT,Weisman GA

    更新日期:1993-11-15 00:00:00

  • Sodium-coupled glycine uptake by Ehrlich ascites tumor cells results in an increase in cell volume and plasma membrane channel activities.

    abstract::The addition of 10 mM glycine to a physiological saline bathing Ehrlich ascites tumor cells is followed by a slow increase in cell volume that plateaus between 15 and 30 min at a level approximately equal to 17% greater than the control volume; this increase is not observed when glycine is added to cells suspended in ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.1.279

    authors: Hudson RL,Schultz SG

    更新日期:1988-01-01 00:00:00

  • ATP-gated ion channels mediate adaptation to elevated sound levels.

    abstract::The sense of hearing is remarkable for its auditory dynamic range, which spans more than 10(12) in acoustic intensity. The mechanisms that enable the cochlea to transduce high sound levels without damage are of key interest, particularly with regard to the broad impact of industrial, military, and recreational auditor...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1222295110

    authors: Housley GD,Morton-Jones R,Vlajkovic SM,Telang RS,Paramananthasivam V,Tadros SF,Wong AC,Froud KE,Cederholm JM,Sivakumaran Y,Snguanwongchai P,Khakh BS,Cockayne DA,Thorne PR,Ryan AF

    更新日期:2013-04-30 00:00:00

  • Dynamics of shear-induced ATP release from red blood cells.

    abstract::Adenosine triphosphate (ATP) is a regulatory molecule for many cell functions, both for intracellular and, perhaps less well known, extracellular functions. An important example of the latter involves red blood cells (RBCs), which help regulate blood pressure by releasing ATP as a vasodilatory signaling molecule in re...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0805779105

    authors: Wan J,Ristenpart WD,Stone HA

    更新日期:2008-10-28 00:00:00

  • Global view of the protein universe.

    abstract::To explore protein space from a global perspective, we consider 9,710 SCOP (Structural Classification of Proteins) domains with up to 70% sequence identity and present all similarities among them as networks: In the "domain network," nodes represent domains, and edges connect domains that share "motifs," i.e., signifi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1403395111

    authors: Nepomnyachiy S,Ben-Tal N,Kolodny R

    更新日期:2014-08-12 00:00:00

  • MitoNEET is a uniquely folded 2Fe 2S outer mitochondrial membrane protein stabilized by pioglitazone.

    abstract::Iron-sulfur (Fe-S) proteins are key players in vital processes involving energy homeostasis and metabolism from the simplest to most complex organisms. We report a 1.5 A x-ray crystal structure of the first identified outer mitochondrial membrane Fe-S protein, mitoNEET. Two protomers intertwine to form a unique dimeri...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0707189104

    authors: Paddock ML,Wiley SE,Axelrod HL,Cohen AE,Roy M,Abresch EC,Capraro D,Murphy AN,Nechushtai R,Dixon JE,Jennings PA

    更新日期:2007-09-04 00:00:00

  • A vertebrate fatty acid desaturase with Delta 5 and Delta 6 activities.

    abstract::Delta5 and Delta6 fatty acid desaturases are critical enzymes in the pathways for the biosynthesis of the polyunsaturated fatty acids arachidonic, eicosapentaenoic, and docosahexaenoic acids. They are encoded by distinct genes in mammals and Caenorhabditis elegans. This paper describes a cDNA isolated from zebrafish (...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.251516598

    authors: Hastings N,Agaba M,Tocher DR,Leaver MJ,Dick JR,Sargent JR,Teale AJ

    更新日期:2001-12-04 00:00:00

  • Structural basis for the CsrA-dependent modulation of translation initiation by an ancient regulatory protein.

    abstract::Regulation of translation is critical for maintaining cellular protein levels, and thus protein homeostasis. The conserved RNA-binding protein CsrA (also called RsmA; for carbon storage regulator and regulator of secondary metabolism, respectively; hereafter called CsrA) represents a well-characterized example of regu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1602425113

    authors: Altegoer F,Rensing SA,Bange G

    更新日期:2016-09-06 00:00:00

  • Direct photonic-plasmonic coupling and routing in single nanowires.

    abstract::Metallic nanoscale structures are capable of supporting surface plasmon polaritons (SPPs), propagating collective electron oscillations with tight spatial confinement at the metal surface. SPPs represent one of the most promising structures to beat the diffraction limit imposed by conventional dielectric optics. Ag na...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0902064106

    authors: Yan R,Pausauskie P,Huang J,Yang P

    更新日期:2009-12-15 00:00:00

  • The compression hypothesis and temporal resource partitioning.

    abstract::Contingency models of feeding compare the energy per unit time gained from utilizing a resource unit of a particular kind (food types, habitat patches, time periods) against that energy/time expected if the unit is skipped. Optimally, an animal should reject the particular unit if and only if the former energy/time is...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.10.4169

    authors: Schoener TW

    更新日期:1974-10-01 00:00:00

  • Prediction of an U2S3-type polymorph of Al2O3 at 3.7 Mbar.

    abstract::We predict by first principles a phase transition in alumina at approximately 3.7 Mbar and room temperature from the CaIrO(3)-type polymorph to another with the U(2)S(3)-type structure. Because alumina is used as window material in shock-wave experiments, this transformation should be important for the analysis of sho...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0711925105

    authors: Umemoto K,Wentzcovitch RM

    更新日期:2008-05-06 00:00:00

  • Tuning environmental timescales to evolve and maintain generalists.

    abstract::Natural environments can present diverse challenges, but some genotypes remain fit across many environments. Such "generalists" can be hard to evolve, outcompeted by specialists fitter in any particular environment. Here, inspired by the search for broadly neutralizing antibodies during B cell affinity maturation, we ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1914586117

    authors: Sachdeva V,Husain K,Sheng J,Wang S,Murugan A

    更新日期:2020-06-09 00:00:00

  • Direct observation of processive exoribonuclease motion using optical tweezers.

    abstract::Bacterial RNases catalyze the turnover of RNA and are essential for gene expression and quality surveillance of transcripts. In Escherichia coli, the exoribonucleases RNase R and polynucleotide phosphorylase (PNPase) play critical roles in degrading RNA. Here, we developed an optical-trapping assay to monitor the tran...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1514028112

    authors: Fazal FM,Koslover DJ,Luisi BF,Block SM

    更新日期:2015-12-08 00:00:00

  • Differential lectin binding to cellular membranes in the epidermis of the newborn rat.

    abstract::Three fluorescein-labeled lectins have been shown to exhibit specificity for the surface of cells in different layers of the epidermis in the newborn rat. An isolectin from seeds of Bandeiraea simplicifolia with specificity for alpha-D-galactosyl end groups labeled the basal and lower spinous cells; a lectin from Ulex...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.77.1.477

    authors: Brabec RK,Peters BP,Bernstein IA,Gray RH,Goldstein IJ

    更新日期:1980-01-01 00:00:00

  • Inhibition in verbal working memory revealed by brain activation.

    abstract::There are many occasions in which humans and other animals must inhibit the production of some behavior or inhibit the processing of some internal representation. Success in inhibitory processing under normal circumstances can be revealed by the fact that certain brain pathologies render inhibitory processing ineffect...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.14.8410

    authors: Jonides J,Smith EE,Marshuetz C,Koeppe RA,Reuter-Lorenz PA

    更新日期:1998-07-07 00:00:00

  • Multiple HLA-DR antigens: detection with monoclonal antibodies and translation in vitro.

    abstract::L203 and L227 are mouse monoclonal antibodies specific for human HLA-DR antigens. Their reactivity with multiple, structurally different, HLA-DR antigens was examined by using radioiodinated human lymphoblastoid cells and cell lines, heterozygous or homozygous at the HLA-D locus. Antibody L203 precipitates DR antigens...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.79.8.2658

    authors: Finn OJ,Levy R

    更新日期:1982-04-01 00:00:00

  • In vitro expression in eukaryotic cells of a prion protein gene cloned from scrapie-infected mouse brain.

    abstract::It has been proposed that the causative agent of scrapie represents a class of infectious particle that is devoid of nucleic acid and that an altered form of the endogenous prion protein (PrP) is the agent. However, it has been difficult to exclude the possibility that PrP purified from scrapie tissues might be contam...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.13.4657

    authors: Caughey B,Race RE,Vogel M,Buchmeier MJ,Chesebro B

    更新日期:1988-07-01 00:00:00

  • Gastric carcinoma: monoclonal epithelial malignant cells expressing Epstein-Barr virus latent infection protein.

    abstract::In 1000 primary gastric carcinomas, 70 (7.0%) contained Epstein-Barr virus (EBV) genomic sequences detected by PCR and Southern blots. The positive tumors comprised 8 of 9 (89%) undifferentiated lymphoepithelioma-like carcinomas, 27 of 476 (5.7%) poorly differentiated adenocarcinomas, and 35 of 515 (6.8%) moderately t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.19.9131

    authors: Imai S,Koizumi S,Sugiura M,Tokunaga M,Uemura Y,Yamamoto N,Tanaka S,Sato E,Osato T

    更新日期:1994-09-13 00:00:00

  • Application of entropy measures derived from the ergodic theory of dynamical systems to rat locomotor behavior.

    abstract::Measures of complexity derived from ergodic theory of dynamical systems were developed and applied to an exemplary data set describing locomotor movements of rats in a bounded space. A symbolic dynamical system was obtained by partitioning the event space into equally probable partition elements, using a k-dimensional...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.2.723

    authors: Paulus MP,Geyer MA,Gold LH,Mandell AJ

    更新日期:1990-01-01 00:00:00

  • Epstein-Barr virus RNA VII: size and direction of transcription of virus-specified cytoplasmic RNAs in a transformed cell line.

    abstract::At least three separate regions of the Epstein-Barr virus (EBV) genome encode RNA in a cell line that is growth transformed and nonpermissively infected with EBV. Six polyadenylylated cytoplasmic RNAs have been identified from these three regions. An abundant RNA 3.0-3.1 kilobases (kb) long is encoded by DNA of the in...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.3.1930

    authors: van Santen V,Cheung A,Kieff E

    更新日期:1981-03-01 00:00:00

  • Linking global climate and temperature variability to widespread amphibian declines putatively caused by disease.

    abstract::The role of global climate change in the decline of biodiversity and the emergence of infectious diseases remains controversial, and the effect of climatic variability, in particular, has largely been ignored. For instance, it was recently revealed that the proposed link between climate change and widespread amphibian...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0912883107

    authors: Rohr JR,Raffel TR

    更新日期:2010-05-04 00:00:00

  • RNA-protein hybrid ribozymes that efficiently cleave any mRNA independently of the structure of the target RNA.

    abstract::Ribozyme activity in vivo depends on achieving high-level expression, intracellular stability, target colocalization, and cleavage site access. At present, target site selection is problematic because of unforeseeable secondary and tertiary RNA structures that prevent cleavage. To overcome this design obstacle, we wis...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.091411398

    authors: Warashina M,Kuwabara T,Kato Y,Sano M,Taira K

    更新日期:2001-05-08 00:00:00

  • Evidence that brain prostaglandin E2 is involved in physiological sleep-wake regulation in rats.

    abstract::We reported in previous studies that prostaglandin E2 (PGE2) has central effects of augmenting wakefulness and suppressing slow-wave sleep (SWS) and paradoxical sleep (PS) in rats. In the present study, we tested the effect of AH 6809, an antagonist of PGE2 receptors, on sleep-wake activities. AH 6809 in saline was in...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.14.5666

    authors: Matsumura H,Honda K,Choi WS,Inoué S,Sakai T,Hayaishi O

    更新日期:1989-07-01 00:00:00

  • A metric map of humans: 23,500 loci in 850 bands.

    abstract::High-resolution maps integrated with the enhanced location data base software (LDB+) give improved estimates of genetic parameters and reveal characteristics of cytogenetic bands. Chiasma interference is intermediate between Kosambi and Carter-Falconer levels, as in Drosophila and the mouse. The autosomal genetic map ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.25.14771

    authors: Collins A,Frezal J,Teague J,Morton NE

    更新日期:1996-12-10 00:00:00

  • Growth inhibition and induction of differentiation of t(8;21) acute myeloid leukemia cells by the DNA-binding domain of PEBP2 and the AML1/MTG8(ETO)-specific antisense oligonucleotide.

    abstract::The translocation from chromosome 8 to chromosome 21, t(8;21), associated with acute myeloid leukemia results in production of an AML1/MTG8(ETO) fusion transcript. The product of the AML1 gene contains an evolutionarily conserved 128-amino acid region referred to as the "Runt domain," which is necessary for binding to...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.24.11723

    authors: Sakakura C,Yamaguchi-Iwai Y,Satake M,Bae SC,Takahashi A,Ogawa E,Hagiwara A,Takahashi T,Murakami A,Makino K

    更新日期:1994-11-22 00:00:00

  • Autophagy protects C. elegans against necrosis during Pseudomonas aeruginosa infection.

    abstract::Autophagy, a conserved pathway that delivers intracellular materials into lysosomes for degradation, is involved in development, aging, and a variety of diseases. Accumulating evidence demonstrates that autophagy plays a protective role against infectious diseases by diminishing intracellular pathogens, including bact...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1405032111

    authors: Zou CG,Ma YC,Dai LL,Zhang KQ

    更新日期:2014-08-26 00:00:00

  • Discovery of a highly synergistic anthelmintic combination that shows mutual hypersusceptibility.

    abstract::The soil-transmitted helminths or nematodes (hookworms, whipworms, and Ascaris) are roundworms that infect more than 1 billion of the poorest peoples and are leading causes of morbidity worldwide. Few anthelmintics are available for treatment, and only one is commonly used in mass drug administrations. New anthelminti...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0912327107

    authors: Hu Y,Platzer EG,Bellier A,Aroian RV

    更新日期:2010-03-30 00:00:00