Salmonella enterica Serovar Typhi in Bangladesh: Exploration of Genomic Diversity and Antimicrobial Resistance.

Abstract:

:Typhoid fever, caused by Salmonella enterica serovar Typhi, is a global public health concern due to increasing antimicrobial resistance (AMR). Characterization of S Typhi genomes for AMR and the evolution of different lineages, especially in countries where typhoid fever is endemic such as Bangladesh, will help public health professionals to better design and implement appropriate preventive measures. We studied whole-genome sequences (WGS) of 536 S Typhi isolates collected in Bangladesh during 1999 to 2013 and compared those sequences with data from a recent outbreak in Pakistan reported previously by E. J. Klemm, S. Shakoor, A. J. Page, F. N. Qamar, et al. (mBio 9:e00105-18, 2018, https://doi.org/10.1128/mBio.00105-18), and a laboratory surveillance in Nepal reported previously by C. D. Britto, Z. A. Dyson, S. Duchene, M. J. Carter, et al. [PLoS Negl. Trop. Dis. 12(4):e0006408, 2018, https://doi.org/10.1371/journal.pntd.0006408]. WGS had high sensitivity and specificity for prediction of ampicillin, chloramphenicol, co-trimoxazole, and ceftriaxone AMR phenotypes but needs further improvement for prediction of ciprofloxacin resistance. We detected a new local lineage of genotype 4.3.1 (named lineage Bd) which recently diverged into a sublineage (named Bdq) containing qnr genes associated with high-level ciprofloxacin resistance. We found a ceftriaxone-resistant isolate with the blaCTX-M-15 gene and a genotype distinct from the genotypes of extensively drug-resistant (XDR) isolates from Pakistan. This result suggests a different source and geographical origin of AMR. Genotype 4.3.1 was dominant in all three countries but formed country-specific clusters in the maximum likelihood phylogenetic tree. Thus, multiple independent genetic events leading to ciprofloxacin and ceftriaxone resistance took place in these neighboring regions of Pakistan, Nepal, and Bangladesh. These independent mutational events may enhance the risk of global spread of these highly resistant clones. A short-term global intervention plan is urgently needed.IMPORTANCE Typhoid fever, caused by Salmonella enterica serovar Typhi, is responsible for an estimated burden of approximately 17 million new episodes per year worldwide. Adequate and timely antimicrobial treatment invariably cures typhoid fever. The increasing antimicrobial resistance (AMR) of S Typhi severely limits the treatment options. We studied whole-genome sequences (WGS) of 536 S Typhi isolates collected in Bangladesh between 1999 and 2013 and compared those sequences with data from a recent outbreak in Pakistan and a laboratory surveillance in Nepal. The analysis suggests that multiple ancestral origins of resistance against ciprofloxacin and ceftriaxone are present in three countries. Such independent genetic events and subsequent dissemination could enhance the risk of a rapid global spread of these highly resistant clones. Given the current treatment challenges, vaccination seems to be the most appropriate short-term intervention to reduce the disease burden of typhoid fever at a time of increasing AMR.

journal_name

mBio

journal_title

mBio

authors

Tanmoy AM,Westeel E,De Bruyne K,Goris J,Rajoharison A,Sajib MSI,van Belkum A,Saha SK,Komurian-Pradel F,Endtz HP

doi

10.1128/mBio.02112-18

subject

Has Abstract

pub_date

2018-11-13 00:00:00

issue

6

issn

2150-7511

pii

mBio.02112-18

journal_volume

9

pub_type

杂志文章

相关文献

mBio文献大全
  • Chlamydia trachomatis Plasmid Gene Protein 3 Is Essential for the Establishment of Persistent Infection and Associated Immunopathology.

    abstract::Chlamydia trachomatis is an obligate intracellular bacterial pathogen that causes blinding trachoma and sexually transmitted disease afflicting hundreds of millions of people globally. A fundamental but poorly understood pathophysiological characteristic of chlamydial infection is the propensity to cause persistent in...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01902-20

    authors: Yang C,Kari L,Lei L,Carlson JH,Ma L,Couch CE,Whitmire WM,Bock K,Moore I,Bonner C,McClarty G,Caldwell HD

    更新日期:2020-08-18 00:00:00

  • Pharmacological Inhibition of Host Heme Oxygenase-1 Suppresses Mycobacterium tuberculosis Infection In Vivo by a Mechanism Dependent on T Lymphocytes.

    abstract::Heme oxygenase-1 (HO-1) is a stress response antioxidant enzyme which catalyzes the degradation of heme released during inflammation. HO-1 expression is upregulated in both experimental and human Mycobacterium tuberculosis infection, and in patients it is a biomarker of active disease. Whether the enzyme plays a prote...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01675-16

    authors: Costa DL,Namasivayam S,Amaral EP,Arora K,Chao A,Mittereder LR,Maiga M,Boshoff HI,Barry CE 3rd,Goulding CW,Andrade BB,Sher A

    更新日期:2016-10-25 00:00:00

  • Finding of Agr Phase Variants in Staphylococcus aureus.

    abstract::Staphylococcus aureus is an important human pathogen whose success is largely attributed to its vast arsenal of virulence factors that facilitate its invasion into, and survival within, the human host. The expression of these virulence factors is controlled by the quorum sensing accessory gene regulator (Agr) system. ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00796-19

    authors: Gor V,Takemura AJ,Nishitani M,Higashide M,Medrano Romero V,Ohniwa RL,Morikawa K

    更新日期:2019-08-06 00:00:00

  • Live Imaging of Host-Parasite Interactions in a Zebrafish Infection Model Reveals Cryptococcal Determinants of Virulence and Central Nervous System Invasion.

    abstract:UNLABELLED:The human fungal pathogen Cryptococcus neoformans is capable of infecting a broad range of hosts, from invertebrates like amoebas and nematodes to standard vertebrate models such as mice and rabbits. Here we have taken advantage of a zebrafish model to investigate host-pathogen interactions of Cryptococcus w...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01425-15

    authors: Tenor JL,Oehlers SH,Yang JL,Tobin DM,Perfect JR

    更新日期:2015-09-29 00:00:00

  • Proteolytic processing and activation of Clostridium perfringens epsilon toxin by caprine small intestinal contents.

    abstract::Epsilon toxin (ETX), a pore-forming toxin produced by type B and D strains of Clostridium perfringens, mediates severe enterotoxemia in livestock and possibly plays a role in human disease. During enterotoxemia, the nearly inactive ETX prototoxin is produced in the intestines but then must be activated by proteolytic ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01994-14

    authors: Freedman JC,Li J,Uzal FA,McClane BA

    更新日期:2014-10-21 00:00:00

  • Role of CTR4 in the Virulence of Cryptococcus neoformans.

    abstract:UNLABELLED:While research has identified an important contribution for metals, such as iron, in microbial pathogenesis, the roles of other transition metals, such as copper, remain mostly unknown. Recent evidence points to a requirement for copper homeostasis in the virulence of Cryptococcus neoformans based on a role ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00285-12

    authors: Waterman SR,Park YD,Raja M,Qiu J,Hammoud DA,O'Halloran TV,Williamson PR

    更新日期:2012-10-02 00:00:00

  • The ESCRT-Related ATPase Vps4 Is Modulated by Interferon during Herpes Simplex Virus 1 Infection.

    abstract::Interferons (IFNs) and autophagy are critical neuronal defenses against viral infection. IFNs alter neuronal autophagy by promoting the accumulation of IFN-dependent LC3-decorated autophagic structures, termed LC3 clusters. Here, we analyzed LC3 clusters in sensory ganglia following herpes simplex virus 1 (HSV-1) infe...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02567-18

    authors: Cabrera JR,Manivanh R,North BJ,Leib DA

    更新日期:2019-03-05 00:00:00

  • Toll-Like Receptor 3 Signaling via TRIF Contributes to a Protective Innate Immune Response to Severe Acute Respiratory Syndrome Coronavirus Infection.

    abstract:UNLABELLED:Toll-like receptors (TLRs) are sensors that recognize molecular patterns from viruses, bacteria, and fungi to initiate innate immune responses to invading pathogens. The emergence of highly pathogenic coronaviruses severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00638-15

    authors: Totura AL,Whitmore A,Agnihothram S,Schäfer A,Katze MG,Heise MT,Baric RS

    更新日期:2015-05-26 00:00:00

  • Chromosome End Repair and Genome Stability in Plasmodium falciparum.

    abstract::The human malaria parasite Plasmodium falciparum replicates within circulating red blood cells, where it is subjected to conditions that frequently cause DNA damage. The repair of DNA double-stranded breaks (DSBs) is thought to rely almost exclusively on homologous recombination (HR), due to a lack of efficient nonhom...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00547-17

    authors: Calhoun SF,Reed J,Alexander N,Mason CE,Deitsch KW,Kirkman LA

    更新日期:2017-08-08 00:00:00

  • Streptococcus pneumoniae is desiccation tolerant and infectious upon rehydration.

    abstract:UNLABELLED:Streptococcus pneumoniae (pneumococcus) is a frequent colonizer of the nasopharynx and one of the leading causative agents of otitis media, pneumonia, and meningitis. The current literature asserts that S. pneumoniae is transmitted person to person via respiratory droplets; however, environmental surfaces (f...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00092-11

    authors: Walsh RL,Camilli A

    更新日期:2011-05-24 00:00:00

  • Antagonistic Rgg regulators mediate quorum sensing via competitive DNA binding in Streptococcus pyogenes.

    abstract:UNLABELLED:Recent studies have established the fact that multiple members of the Rgg family of transcriptional regulators serve as key components of quorum sensing (QS) pathways that utilize peptides as intercellular signaling molecules. We previously described a novel QS system in Streptococcus pyogenes which utilizes...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00333-12

    authors: Lasarre B,Aggarwal C,Federle MJ

    更新日期:2013-01-02 00:00:00

  • A mouse model for human norovirus.

    abstract:UNLABELLED:Human noroviruses (HuNoVs) cause significant morbidity and mortality worldwide. However, despite substantial efforts, a small-animal model for HuNoV has not been described to date. Since "humanized" mice have been successfully used to study human-tropic pathogens in the past, we challenged BALB/c mice defici...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00450-13

    authors: Taube S,Kolawole AO,Höhne M,Wilkinson JE,Handley SA,Perry JW,Thackray LB,Akkina R,Wobus CE

    更新日期:2013-07-16 00:00:00

  • Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation.

    abstract:UNLABELLED:The opportunistic fungal pathogen Cryptococcus neoformans causes life-threatening meningitis in immunocompromised individuals. The expression of virulence factors, including capsule and melanin, is in part regulated by the cyclic-AMP/protein kinase A (cAMP/PKA) signal transduction pathway. In this study, we ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01862-15

    authors: Geddes JM,Caza M,Croll D,Stoynov N,Foster LJ,Kronstad JW

    更新日期:2016-01-12 00:00:00

  • AtrR Is an Essential Determinant of Azole Resistance in Aspergillus fumigatus.

    abstract::Aspergillosis associated with azole-resistant Aspergillus fumigatus has a mortality rate that can approach 90% in certain patient populations. The best-understood avenue for azole resistance involves changes in the cyp51A gene that encodes the target of azole drugs, lanosterol α-14 demethylase. The most common azole r...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02563-18

    authors: Paul S,Stamnes M,Thomas GH,Liu H,Hagiwara D,Gomi K,Filler SG,Moye-Rowley WS

    更新日期:2019-03-12 00:00:00

  • Sharing of prey: coinfection of a bacterium by a virus and a prokaryotic predator.

    abstract:UNLABELLED:Rarely, if ever, has a single bacterial cell been confirmed to simultaneously host two fundamentally different predators. Two such predators are viruses and the predatory prokaryotes known as Bdellovibrio and like organisms. Viruses or bacteriophage are particles requiring prey cells in an active metabolic s...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00051-12

    authors: Chen H,Williams HN

    更新日期:2012-04-17 00:00:00

  • Immune Regulation of Plasmodium Is Anopheles Species Specific and Infection Intensity Dependent.

    abstract::Malaria parasite ookinetes must traverse the vector mosquito midgut epithelium to transform into sporozoite-producing oocysts. The Anopheles innate immune system is a key regulator of this process, thereby determining vector competence and disease transmission. The role of Anopheles innate immunity factors as agonists...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01631-17

    authors: Simões ML,Mlambo G,Tripathi A,Dong Y,Dimopoulos G

    更新日期:2017-10-17 00:00:00

  • Noncanonical G-protein-dependent modulation of osteoclast differentiation and bone resorption mediated by Pasteurella multocida toxin.

    abstract:UNLABELLED:Pasteurella multocida toxin (PMT) induces atrophic rhinitis in animals, which is characterized by a degradation of nasal turbinate bones, indicating an effect of the toxin on bone cells such as osteoblasts and osteoclasts. The underlying molecular mechanism of PMT was defined as a persistent activation of he...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02190-14

    authors: Strack J,Heni H,Gilsbach R,Hein L,Aktories K,Orth JH

    更新日期:2014-11-11 00:00:00

  • Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information.

    abstract::Pulmonary exacerbations are the leading cause of death in cystic fibrosis (CF) patients. To track microbial dynamics during acute exacerbations, a CF rapid response (CFRR) strategy was developed. The CFRR relies on viromics, metagenomics, metatranscriptomics, and metabolomics data to rapidly monitor active members of ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00431-19

    authors: Cobián Güemes AG,Lim YW,Quinn RA,Conrad DJ,Benler S,Maughan H,Edwards R,Brettin T,Cantú VA,Cuevas D,Hamidi R,Dorrestein P,Rohwer F

    更新日期:2019-04-16 00:00:00

  • Contribution of resistance-nodulation-cell division efflux systems to antibiotic resistance and biofilm formation in Acinetobacter baumannii.

    abstract:UNLABELLED:Acinetobacter baumannii is a nosocomial pathogen of increasing importance due to its multiple resistance to antibiotics and ability to survive in the hospital environment linked to its capacity to form biofilms. To fully characterize the contribution of AdeABC, AdeFGH, and AdeIJK resistance-nodulation-cell d...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00309-15

    authors: Yoon EJ,Chabane YN,Goussard S,Snesrud E,Courvalin P,Dé E,Grillot-Courvalin C

    更新日期:2015-03-24 00:00:00

  • Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles.

    abstract::Emerging zoonotic viral diseases remain a challenge to global public health. Recent surveillance studies have implicated bats as potential reservoirs for a number of viral pathogens, including coronaviruses and Ebola viruses. Caliciviridae represent a major viral family contributing to emerging diseases in both human ...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00869-18

    authors: Kocher JF,Lindesmith LC,Debbink K,Beall A,Mallory ML,Yount BL,Graham RL,Huynh J,Gates JE,Donaldson EF,Baric RS

    更新日期:2018-05-22 00:00:00

  • Disentangling Host-Microbiota Regulation of Lipid Secretion by Enterocytes: Insights from Commensals Lactobacillus paracasei and Escherichia coli.

    abstract::The gut microbiota contributes to nutrients absorption and metabolism by enterocytes, but the molecular mechanisms involved remain poorly understood, and most conclusions are inferred from studies comparing germfree and conventional animals colonized with diverse bacterial species. We selected two model commensal micr...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01493-18

    authors: Tazi A,Araujo JR,Mulet C,Arena ET,Nigro G,Pédron T,Sansonetti PJ

    更新日期:2018-09-04 00:00:00

  • Characterization of H5N1 influenza virus variants with hemagglutinin mutations isolated from patients.

    abstract:UNLABELLED:A change in viral hemagglutinin (HA) receptor binding specificity from α2,3- to α2,6-linked sialic acid is necessary for highly pathogenic avian influenza (AI) virus subtype H5N1 to become pandemic. However, details of the human-adaptive change in the H5N1 virus remain unknown. Our database search of H5N1 cl...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00081-15

    authors: Watanabe Y,Arai Y,Daidoji T,Kawashita N,Ibrahim MS,El-Gendy Eel-D,Hiramatsu H,Kubota-Koketsu R,Takagi T,Murata T,Takahashi K,Okuno Y,Nakaya T,Suzuki Y,Ikuta K

    更新日期:2015-04-07 00:00:00

  • Gcn5p and Ubp8p Affect Protein Ubiquitylation and Cell Proliferation by Altering the Fermentative/Respiratory Flux Balance in Saccharomyces cerevisiae.

    abstract::Protein ubiquitylation regulates not only endocellular trafficking and proteasomal degradation but also the catalytic activity of enzymes. In Saccharomyces cerevisiae, we analyzed the composition of the ubiquitylated proteomes in strains lacking acetyltransferase Gcn5p, Ub-protease Ubp8p, or both to understand their i...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01504-20

    authors: De Palma A,Fanelli G,Cretella E,De Luca V,Palladino RA,Panzeri V,Roffia V,Saliola M,Mauri P,Filetici P

    更新日期:2020-08-11 00:00:00

  • Efficient and Highly Specific Gene Transfer Using Mutated Lentiviral Vectors Redirected with Bispecific Antibodies.

    abstract::Despite their exceptional potencies, the broad tropism of most commonly used lentivirus (LV) vectors limits their use for targeted gene delivery in vivo We hypothesized that we could improve the specificity of LV targeting by coupling (i) reduction of their binding to off-target cells with (ii) redirection of the vect...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02990-19

    authors: Parker CL,Jacobs TM,Huckaby JT,Harit D,Lai SK

    更新日期:2020-01-21 00:00:00

  • Cap0037, a Novel Global Regulator of Clostridium acetobutylicum Metabolism.

    abstract::An operon comprising two genes, CA_P0037 and CA_P0036, that encode proteins of unknown function that were previously shown to be highly expressed in acidogenic cells and repressed in solventogenic and alcohologenic cells is located on the pSOL1 megaplasmid of Clostridium acetobutylicum upstream of adhE2 A CA_P0037::in...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.01218-16

    authors: Nguyen NP,Linder S,Flitsch SK,Schiel-Bengelsdorf B,Dürre P,Soucaille P

    更新日期:2016-10-04 00:00:00

  • Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

    abstract::Cholera continues to be an important cause of human infections, and outbreaks are often observed after natural disasters, such as the one following the 2010 earthquake in Haiti. Once the cholera outbreak was confirmed, rumors spread that the disease was brought to Haiti by a battalion of Nepalese soldiers serving as U...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00157-11

    authors: Hendriksen RS,Price LB,Schupp JM,Gillece JD,Kaas RS,Engelthaler DM,Bortolaia V,Pearson T,Waters AE,Upadhyay BP,Shrestha SD,Adhikari S,Shakya G,Keim PS,Aarestrup FM

    更新日期:2011-09-01 00:00:00

  • Characterization of an M-Cluster-Substituted Nitrogenase VFe Protein.

    abstract::The Mo- and V-nitrogenases are two homologous members of the nitrogenase family that are distinguished mainly by the presence of different heterometals (Mo or V) at their respective cofactor sites (M- or V-cluster). However, the V-nitrogenase is ~600-fold more active than its Mo counterpart in reducing CO to hydrocarb...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00310-18

    authors: Rebelein JG,Lee CC,Newcomb M,Hu Y,Ribbe MW

    更新日期:2018-03-13 00:00:00

  • Chromosomal "stress-response" domains govern the spatiotemporal expression of the bacterial virulence program.

    abstract:UNLABELLED:Recent studies strongly suggest that the gene expression sustaining both normal and pathogenic bacterial growth is governed by the structural dynamics of the chromosome. However, the mechanistic device coordinating the chromosomal configuration with selective expression of the adaptive traits remains largely...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00353-15

    authors: Jiang X,Sobetzko P,Nasser W,Reverchon S,Muskhelishvili G

    更新日期:2015-04-28 00:00:00

  • Stapled Peptides Based on Human Angiotensin-Converting Enzyme 2 (ACE2) Potently Inhibit SARS-CoV-2 Infection In Vitro.

    abstract::SARS-CoV-2 uses human angiotensin-converting enzyme 2 (ACE2) as the primary receptor to enter host cells and initiate the infection. The critical binding region of ACE2 is an ∼30-amino-acid (aa)-long helix. Here, we report the design of four stapled peptides based on the ACE2 helix, which is expected to bind to SARS-C...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.02451-20

    authors: Curreli F,Victor SMB,Ahmed S,Drelich A,Tong X,Tseng CK,Hillyer CD,Debnath AK

    更新日期:2020-12-11 00:00:00

  • Novel metabolic attributes of the genus cyanothece, comprising a group of unicellular nitrogen-fixing Cyanothece.

    abstract:UNLABELLED:The genus Cyanothece comprises unicellular cyanobacteria that are morphologically diverse and ecologically versatile. Studies over the last decade have established members of this genus to be important components of the marine ecosystem, contributing significantly to the nitrogen and carbon cycle. System-lev...

    journal_title:mBio

    pub_type: 杂志文章

    doi:10.1128/mBio.00214-11

    authors: Bandyopadhyay A,Elvitigala T,Welsh E,Stöckel J,Liberton M,Min H,Sherman LA,Pakrasi HB

    更新日期:2011-10-04 00:00:00