Abstract:
:Salinity is one of the major abiotic factors that affect productivity in oat. Here, we report a comparison of the transcriptomes of two hexaploid oat cultivars, 'Hanyou-5' and 'Huazao-2', which differ with respect to salt tolerance, in seedlings exposed to salt stress. Analysis of the assembled unigenes from the osmotically stressed and control libraries of 'Hanyou-5' and 'Huazao-2' showed that the expression of 21.92% (36,462/166,326) of the assembled unigenes was differentially regulated in the two cultivars after different durations of salt stress. Bioinformatics analysis showed that the main functional categories enriched in these DEGs were "metabolic process", "response to stresses", "plant hormone signal transduction", "MAPK signalling", "oxidative phosphorylation", and the plant-pathogen interaction pathway. Some regulatory genes, such as those encoding MYB, WRKY, bHLH, and zinc finger proteins, were also found to be differentially expressed under salt stress. Physiological measurements also detected significant differences in the activities of POD (76.24 ± 1.07 Vs 81.53 ± 1.47 U/g FW) in the two genotypes in response to osmotic stress. Furthermore, differential expression of 18 of these genes was successfully validated using RNA-seq and qRT-PCR analyses. A number of stress-responsive genes were identified in both cultivars, and candidate genes with potential roles in the adaptation to salinity were proposed.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Wu B,Munkhtuya Y,Li J,Hu Y,Zhang Q,Zhang Zdoi
10.1038/s41598-018-34505-5subject
Has Abstractpub_date
2018-11-02 00:00:00pages
16248issue
1issn
2045-2322pii
10.1038/s41598-018-34505-5journal_volume
8pub_type
杂志文章abstract::Banana production is severely hindered by plant-parasitic nematodes in acidic, sandy soil. This study investigated the possibility of applying a novel fumigation agent based on ammonium bicarbonate as a strategy for controlling plant-parasitic nematodes under sealed conditions. Moreover, its effects on the nematode co...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep17597
更新日期:2015-12-01 00:00:00
abstract::The discovery of CRISPR/Cas gene editing has allowed for major advances in many biomedical disciplines and basic research. One arrangement of this biotechnology, a nuclease-based gene drive, can rapidly deliver a genetic element through a given population and studies in fungi and metazoans have demonstrated the succes...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-34909-3
更新日期:2018-11-22 00:00:00
abstract::We study localized photonic excitations in a quasi-two-dimensional non-ideal binary microcavity lattice with use of the virtual crystal approximation. The effect of point defects (vacancies) on the excitation spectrum is investigated by numerical modelling. We obtain the dispersion and the energy gap of the electromag...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep06945
更新日期:2014-11-06 00:00:00
abstract::The endogenous circadian clock drives oscillations that are completely synchronized with the environmental day-night rhythms with a period of approximately 24 hours. Temporal misalignment between one's internal circadian clock and the external solar time often occurs in shift workers and long-distance travelers; such ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep46702
更新日期:2017-04-26 00:00:00
abstract::Attosecond (asec) X-ray free-electron laser (XFEL) has attracted considerable interest over the past years. Nowadays typical XFEL application experiments demand 1010-1011 photons per pulse, which corresponds to a peak power of terawatts (TW) in case of asec hard X-ray pulse. To the realization of such TW asec-XFEL pul...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-57905-y
更新日期:2020-01-28 00:00:00
abstract::Microphysiological systems (MPSs) are in vitro models that capture facets of in vivo organ function through use of specialized culture microenvironments, including 3D matrices and microperfusion. Here, we report an approach to co-culture multiple different MPSs linked together physiologically on re-useable, open-syste...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-22749-0
更新日期:2018-03-14 00:00:00
abstract::The band structures of dilute-As AlNAs alloys with As composition ranging from 0% up to 12.5% are studied by using First-Principle Density Functional Theory (DFT) calculation. The energy band gap shows remarkable reduction from 6.19 eV to 3.87 eV with small amount of As content in the AlNAs alloy, which covers the dee...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep22215
更新日期:2016-02-24 00:00:00
abstract::To increase the yield potential while limiting the environmental impact of N management practices is an important issue in rice cultivation. The large-grain rice cultivar Akita 63 showed higher N-use efficiency for grain production. To elucidate this, we analyzed yield characteristics of Akita 63 in comparison with th...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-69289-0
更新日期:2020-07-22 00:00:00
abstract::The Casimir force exerted on a gold dipolar nanoparticle by a finite-thickness slab of the natural hyperbolic material namely, the ortorhombic crystalline modification of boron nitride, is investigated. The main contribution to the force originates from the TM-polarized waves, for frequencies at which the parallel and...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-73995-0
更新日期:2020-10-08 00:00:00
abstract::Still recently, bacterial fluid suspensions have motivated a lot of works, both experimental and theoretical, with the objective to understand their collective dynamics from universal and simple rules. Since some species are active, most of these works concern the strong interactions that these bacteria exert on a for...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep21269
更新日期:2016-02-18 00:00:00
abstract::Current literature suggests that epigenetically regulated super-enhancers (SEs) are drivers of aberrant gene expression in cancers. Many tumor types are still missing chromatin data to define cancer-specific SEs and their role in carcinogenesis. In this work, we develop a simple pipeline, which can utilize chromatin d...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-51018-x
更新日期:2019-10-21 00:00:00
abstract::To understand the mechanisms of male sterility in cotton (Gossypium spp.), combined histological, biochemical and transcription analysis using RNA-Seq was carried out in the anther of the single-gene recessive genic male sterility system of male sterile line 1355A and male fertile line 1355B, which are near-isogenic l...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep09608
更新日期:2015-06-05 00:00:00
abstract::Glucocorticoid receptor (GR) is a hormone-activated transcription regulatory protein involved in metabolism as well as adrenocortical responses to psychosocial stress. Ligand-activated GR localizes to the nucleus, where GR homodimers regulate gene transcription via direct binding to glucocorticoid response elements (G...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-25393-w
更新日期:2018-05-10 00:00:00
abstract::Fragmentation is a major driver of ecosystem degradation, reducing the capacity of habitats to provide many important ecosystem services. Mangrove ecosystem services, such as erosion prevention, shoreline protection and mitigation of climate change (through carbon sequestration), depend on the size and arrangement of ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-63880-1
更新日期:2020-04-28 00:00:00
abstract::Plastic degradation rates in the marine environment are essential to understand. This study demonstrates that in plastic-microbial interaction experiments, residual monomeric and oligomeric content of PA6 significantly influences the development of dissolved organic carbon. While it is well recognized that additives i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-38685-6
更新日期:2019-02-14 00:00:00
abstract::We compared markers of glucose homeostasis and their association with diabetes and impaired fasting glucose (IFG) in Fukuoka, Japanese subjects (n = 1108) and age-, gender- and menopausal status-matched participants in the Framingham Offspring Study (n = 1096). The markers examined included fasting glucose, insulin, a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep36725
更新日期:2016-11-10 00:00:00
abstract::We describe a new reproducibility-optimization method ROPECA for statistical analysis of proteomics data with a specific focus on the emerging data-independent acquisition (DIA) mass spectrometry technology. ROPECA optimizes the reproducibility of statistical testing on peptide-level and aggregates the peptide-level c...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-05949-y
更新日期:2017-07-19 00:00:00
abstract::Innate immunity is induced when pathogen-associated molecular patterns (PAMPs) bind host pattern recognition receptors (PRRs). Polyinosinic:polycytidylic acid [poly(I:C)] is a synthetic analogue of viral dsRNA that acts as a PAMP, inducing type I interferons (IFNs) in vertebrates. In the present study, the immunostimu...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-49931-2
更新日期:2019-09-20 00:00:00
abstract::Bipedalism is a defining feature of the human lineage. Despite evidence that walking on two feet dates back 6-7 Ma, reconstructing hominin gait evolution is complicated by a sparse fossil record and challenges in inferring biomechanical patterns from isolated and fragmentary bones. Similarly, patterns of social behavi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep28766
更新日期:2016-07-12 00:00:00
abstract::Macro- and micro-environmental factors modulate parasite loads in fish, determining parasitic abundances, diversity, and interaction dynamics. In this study, seasonal variations in larval ectoparasites on fish larvae in the northern Humboldt Current System (HCS) were evaluated using a delta-gamma generalized linear mo...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-79847-1
更新日期:2021-01-12 00:00:00
abstract::Graphene oxide is being used in energy, optical, electronic and sensor devices due to its unique properties. However, unlike its counterpart - graphene - the thermal transport properties of graphene oxide remain unknown. In this work, we use large-scale molecular dynamics simulations with reactive potentials to system...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep03909
更新日期:2014-01-28 00:00:00
abstract::This corrects the article DOI: 10.1038/srep34617. ...
journal_title:Scientific reports
pub_type: 杂志文章,已发布勘误
doi:10.1038/srep42267
更新日期:2017-09-27 00:00:00
abstract::Development of highly efficient and potential material for toxic p-nitrophenol is an important design for sensitive detection of hazardous species from ecology and environment. Here it is developed, an efficient as well as selective of p-nitrophenol using binary material by electrochemical performances, including good...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-55891-4
更新日期:2019-12-17 00:00:00
abstract::Atherosclerotic coronary artery disease (CAD) is the number one cause of death worldwide. The majority of CAD-induced deaths are due to the rupture of vulnerable plaques. Accurate assessment of plaques is crucial to optimize treatment and prevent death in patients with CAD. Current diagnostic techniques are often limi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18406
更新日期:2015-12-18 00:00:00
abstract::Surgical treatment of tendon lesions still yields unsatisfactory clinical outcomes. The use of bioresorbable scaffolds represents a way forward to improve tissue repair. Scaffolds for tendon reconstruction should have a structure mimicking that of the natural tendon, while providing adequate mechanical strength and st...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35536-8
更新日期:2018-11-21 00:00:00
abstract::Melting is considered to be one of the most fundamental problems in physical science. Generally, dimensionality plays an important role in melting. In three-dimension, it's well known that a crystal melts directly into a liquid via a first-order transition. In two-dimension (2D), however, the melting process has been ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep24056
更新日期:2016-04-07 00:00:00
abstract::Sequence-controlled polymers (SCPs) such as DNA and proteins play an important role in biology. Many efforts have been devoted to synthesize SCPs in the past half a century. However, to our knowledge, the artificial sequences containing independently functional groups have never been reported. Here, we present a facil...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep04387
更新日期:2014-03-17 00:00:00
abstract::Evolutionary processes, speciation in woody bamboos are presently little understood. Here we used Dendrocalamus sinicus Chia & J.L. Sun as a model species to investigate dispersal or vicariance speciation in woody bamboos. Variation in three chloroplast DNA (cpDNA) fragments and eight simple sequence repeat markers (S...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35269-8
更新日期:2018-11-16 00:00:00
abstract::While Brassica oleracea vegetables have been linked to cancer prevention, the exact mechanism remains unknown. Regulation of gene expression by cross-species microRNAs has been previously reported; however, its link to cancer suppression remains unexplored. In this study we address both issues. We confirm plant microR...
journal_title:Scientific reports
pub_type: 杂志文章,收录出版
doi:10.1038/srep32773
更新日期:2016-09-08 00:00:00
abstract::Most Group I Clostridium botulinum strains harbor botulinum neurotoxin (bont) genes on their chromosome, while some carry these genes (including bont/a, bont/b, and bont/f) on large plasmids. Prior work in our laboratory demonstrated that Group I BoNT plasmids were mobilized to C. botulinum recipient strains containin...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-21342-9
更新日期:2018-02-15 00:00:00