Mesorhizobium ephedrae sp. nov. isolated from the roots of Ephedra przewalskii in Kumtag desert.

Abstract:

:Strain 6GN-30T, a Gram-stain-negative, aerobic, non-spore-forming, rod-shaped, motile bacterium was isolated from Ephedra sinica roots in the Kumtag Desert. On the basis of the 16S rRNA gene sequence, the isolate represented a member of the genus Mesorhizobium of the family Phyllobacteriaceae. The results of a phylogenetic analysis indicated that 6GN-30T was phylogenetically related to Mesorhizobium soliNHI-8T. Strain 6GN-30T grew at a salinity of 0-1.0 % (w/v) NaCl (with optimum growth in the absence of NaCl), pH 6.0-9.0 (optimum 7.0-8.0) and 15-45 °C. The major cellular fatty acids were summed feature 8 (C18 : 1ω7c/C18 : 1ω6c), C19 : 0cyclo ω8c, iso-C17 : 0, C18 : 0, and C16 : 0. The draft genome of 6GN-30T was 6.11 Mb long, with a DNA G+C content of 66.4 mol%. The average nucleotide identity to M. soliNHI-8T was 84.32 %. The strain contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine,aminophospholipids and phospholipids. The chemotaxonomic, phylogenetic and phenotypic data indicate that 6GN-30T represents a novel species of the genus Mesorhizobiumfor which the name Mesorhizobiumephedrae sp. nov. is proposed. The type strain is 6GN-30T (=ACCC 60073T=KCTC 62410T).

authors

Liu L,Liang LX,Zhang XX,Li LB,Sun QW

doi

10.1099/ijsem.0.003044

subject

Has Abstract

pub_date

2018-11-01 00:00:00

pages

3615-3620

issue

11

eissn

1466-5026

issn

1466-5034

journal_volume

68

pub_type

杂志文章
  • Bacillus marisflavi sp. nov. and Bacillus aquimaris sp. nov., isolated from sea water of a tidal flat of the Yellow Sea in Korea.

    abstract::Two Gram-positive or Gram-variable, endospore-forming, moderately halophilic rods (strains TF-11(T) and TF-12(T)) were isolated from a tidal flat of the Yellow Sea in Korea and were subjected to a polyphasic taxonomic study. Strains TF-11(T) and TF-12(T) had cell-wall peptidoglycan based on meso-diaminopimelic acid. T...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02365-0

    authors: Yoon JH,Kim IG,Kang KH,Oh TK,Park YH

    更新日期:2003-09-01 00:00:00

  • Aspergillus saccharolyticus sp. nov., a black Aspergillus species isolated in Denmark.

    abstract::A novel species, Aspergillus saccharolyticus sp. nov., belonging to the Aspergillus section Nigri group is described. This species was isolated in Denmark from treated hardwood. Its taxonomic status was determined using a polyphasic taxonomic approach including phenotypic (morphology and extrolite profiles) and molecu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.029884-0

    authors: Sørensen A,Lübeck PS,Lübeck M,Nielsen KF,Ahring BK,Teller PJ,Frisvad JC

    更新日期:2011-12-01 00:00:00

  • Sulfuriflexusmobilis gen. nov., sp. nov., a sulfur-oxidizing bacterium isolated from a brackish lake sediment.

    abstract::A chemolithotrophic sulfur-oxidizing bacterium, strain aks1T, was isolated from sediment of a brackish lake in Japan. The cells were curved rod-shaped and Gram-stain-negative. The G+C content of the genomic DNA was 53 mol%. The major components in the cellular fatty acid profile were C16 : 0 and summed feature 3 (C16 ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001227

    authors: Kojima H,Fukui M

    更新日期:2016-09-01 00:00:00

  • Chryseobacterium lineare sp. nov., isolated from a limpid stream.

    abstract::A Gram-stain-negative, aerobic, non-motile, rod-shaped, yellow-pigmented bacterial strain, XC0022T, isolated from freshwater of a limpid stream in Zhejiang, China, was studied using a polyphasic approach. The phylogenetic analysis based on 16S rRNA gene sequences clearly showed an allocation to the genus Chryseobacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001629

    authors: Zhao Z,Tu YQ,Shen X,Han SB,Zhang CY,Sun C,Wu M

    更新日期:2017-04-01 00:00:00

  • Reclassification of Desulfotomaculum auripigmentum as Desulfosporosinus auripigmenti corrig., comb. nov.

    abstract::The species Desulfotomaculum auripigmentum is reclassified as Desulfosporosinus auripigmenti corrig., comb. nov. on the basis of morphological and physiological traits, phylogenetic position and chemotaxonomic properties. Characteristics supplementary to those provided in the original description reveal that the type ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02526-0

    authors: Stackebrandt E,Schumann P,Schüler E,Hippe H

    更新日期:2003-09-01 00:00:00

  • Flavobacterium collinsense sp. nov., isolated from a till sample of an Antarctic glacier.

    abstract::A novel rod-shaped, Gram-stain-negative, non-gliding and aerobic strain surrounded by a multilayer capsule, designated 4-T-2T, was isolated from a till sample of Collins glacier front, Antarctica. The bacterium formed yellow, circular, convex and smooth colonies. Growth occurred at 4-28 °C (optimum18-20 °C), at pH 7.0...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000688

    authors: Zhang Y,Jiang F,Chang X,Qiu X,Ren L,Qu Z,Deng S,Da X,Fang C,Peng F

    更新日期:2016-01-01 00:00:00

  • Proposal of Rhodoplanes tepidamans sp. nov. to accommodate the thermotolerant phototrophic bacterium previously referred to as 'Rhodoplanes (Rhodopseudomonas) cryptolactis'.

    abstract::Previously we proposed the reclassification of a thermotolerant phototrophic bacterium, 'Rhodopseudomonas cryptolactis' Stadtwald-Demchick et al. 1990, as 'Rhodoplanes cryptolactis' nom. rev., comb. nov. with strain DSM 9987T (ATCC 49414T) as the type strain. However, while both the names 'Rhodopseudomonas cryptolacti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001752

    authors: Hiraishi A,Okamura K

    更新日期:2017-05-01 00:00:00

  • Brucella papionis sp. nov., isolated from baboons (Papio spp.).

    abstract::Two Gram-negative, non-motile, non-spore-forming coccoid bacteria (strains F8/08-60(T) and F8/08-61) isolated from clinical specimens obtained from baboons (Papio spp.) that had delivered stillborn offspring were subjected to a polyphasic taxonomic study. On the basis of 16S rRNA gene sequence similarities, both strai...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.065482-0

    authors: Whatmore AM,Davison N,Cloeckaert A,Al Dahouk S,Zygmunt MS,Brew SD,Perrett LL,Koylass MS,Vergnaud G,Quance C,Scholz HC,Dick EJ,Hubbard G,Schlabritz-Loutsevitch NE

    更新日期:2014-12-01 00:00:00

  • Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana.

    abstract::Three anaerobic bacterial strains were isolated from the digestive tract of the medicinal leech Hirudo verbana, using mucin as the primary carbon and energy source. These strains, designated M3(T), M4 and M6, were Gram-stain-negative, non-spore-forming and non-motile. Cells were elongated bacilli approximately 2.4 µm ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000052

    authors: Nelson MC,Bomar L,Maltz M,Graf J

    更新日期:2015-03-01 00:00:00

  • Micromonospora sediminis sp. nov., isolated from mangrove sediment.

    abstract::The novel actinomycete, strain CH3-3T, was isolated from mangrove sediment collected from Chonburi Province, Thailand. On the basis of its spore morphology and chemotaxonomic characteristics, the strain belonged to the genus Micromonospora. It contained meso-diaminopimelic acid, glucose, mannose, xylose, ribose and rh...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001175

    authors: Phongsopitanun W,Kudo T,Ohkuma M,Pittayakhajonwut P,Suwanborirux K,Tanasupawat S

    更新日期:2016-08-01 00:00:00

  • Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea.

    abstract::A Gram-positive, facultatively anaerobic, motile, spore-forming bacterium, designated Gsoil 1411T, was isolated from soil of a ginseng field in Pocheon Province (South Korea) and was characterized using a polyphasic approach. Comparative analysis of 16S rRNA gene sequences revealed that strain Gsoil 1411T belongs to t...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64405-0

    authors: Ten LN,Baek SH,Im WT,Lee M,Oh HW,Lee ST

    更新日期:2006-11-01 00:00:00

  • Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium.

    abstract::The marine bacterial strain HY9(T) was isolated from sediment from the South China Sea. Strain HY9(T) is aerobic, heterotrophic and rose-pigmented. The cells are non-motile and curved, i.e. ring-like or horseshoe-shaped. The 16S rRNA gene sequence of strain HY9(T) was determined and blast searches revealed that it pos...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64510-0

    authors: Ying JY,Wang BJ,Yang SS,Liu SJ

    更新日期:2006-12-01 00:00:00

  • Cecembia calidifontis sp. nov., isolated from a hot spring runoff, and emended description of the genus Cecembia.

    abstract::Two red-pigmented isolates, designated RQ-33(T) and TU-13, were recovered from hot spring runoffs on the Island of São Miguel in the Azores, Portugal. These organisms have an optimum growth temperature of approximately 45 °C and an optimum pH for growth between 7.5 and 8.5. Based on 16S rRNA gene sequence analysis, th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044537-0

    authors: Albuquerque L,Tiago I,Nobre MF,Veríssimo A,da Costa MS

    更新日期:2013-04-01 00:00:00

  • Thermomonas fusca sp. nov. and Thermomonas brevis sp. nov., two mesophilic species isolated from a denitrification reactor with poly(epsilon-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas.

    abstract::Previously, 22 aerobic Gram-negative bacteria were isolated from biofilms growing on granules of the synthetic polyester poly(epsilon-caprolactone); the granules were used as a fixed bed in a denitrification reactor. All the strains showed similar fatty acid profiles. The 16S rRNA gene sequences of five strains were p...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02684-0

    authors: Mergaert J,Cnockaert MC,Swings J

    更新日期:2003-11-01 00:00:00

  • Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake.

    abstract::A Gram-positive, moderately halophilic rod, designated X5BT, was isolated from saline mud of the hypersaline lake Aran-Bidgol in Iran. Strain X5BT was a strictly aerobic, motile bacterium that produced ellipsoidal endospores at a central-subterminal position in non-swollen sporangia. The isolate grew at pH 7.0-10.0 (o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030874-0

    authors: Bagheri M,Didari M,Amoozegar MA,Schumann P,Sánchez-Porro C,Mehrshad M,Ventosa A

    更新日期:2012-04-01 00:00:00

  • The status of the genus Pelczaria (Poston 1994) and the species Pelczaria aurantia (Poston 1994). Request for an Opinion.

    abstract::Based upon the results of another publication [P. Schumann et al. (2000). Int J Syst Evol Microbiol 50, 1421-1424) it is concluded that the culture Pelczaria aurantia ATCC 49321T (= DSM 12801T) currently being distributed does not conform to the description of the type strain of Pelczaria aurantia (Poston 1994) and th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-4-1695

    authors: Tindall BJ,Schumann P,Stackebrandt E

    更新日期:2000-07-01 00:00:00

  • Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China.

    abstract::A Gram-positive, non-motile actinobacterium, designated strain YIM 70177(T), was isolated from a saline soil sample from Qinghai Province, north-west China. Phylogenetic analysis of this organism based on 16S rRNA gene sequences revealed 98.3% similarity to Isoptericola variabilis DSM 10177(T). Chemotaxonomic data det...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63641-0

    authors: Zhang YQ,Schumann P,Li WJ,Chen GZ,Tian XP,Stackebrandt E,Xu LH,Jiang CL

    更新日期:2005-09-01 00:00:00

  • Bacillus panacisoli sp. nov., isolated from ginseng soil.

    abstract::A Gram-staining-positive, motile, facultatively anaerobic, endospore-forming and rod-shaped bacterium, designated strain CJ32(T), was isolated from ginseng soil at Geumsan in Korea. The isolate grew optimally at 30 °C, 2% (w/v) NaCl and pH 7.0. Colonies of strain CJ32(T) were beige and circular with an entire margin o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.054320-0

    authors: Choi JH,Cha CJ

    更新日期:2014-03-01 00:00:00

  • Acetobacter oeni sp. nov., isolated from spoiled red wine.

    abstract::A bacterial strain, designated B13T, was isolated from spoiled red wine from the Dão region, Portugal. The strain was Gram-negative, strictly aerobic, rod-shaped and motile. Phylogenetic analysis on the basis of 16S rRNA gene sequences indicated that B13T belonged to the genus Acetobacter within the Alphaproteobacteri...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.46000-0

    authors: Silva LR,Cleenwerck I,Rivas R,Swings J,Trujillo ME,Willems A,Velázquez E

    更新日期:2006-01-01 00:00:00

  • Thermus arciformis sp. nov., a thermophilic species from a geothermal area.

    abstract::Two aerobic, Gram-negative, non-motile, non-sporulating, yellow-pigmented bacteria, strains TH92(T) and TH91, were isolated from a hot spring located in Laibin, Guangxi, in the south-eastern geothermal area of China. The isolates grew at 40-77 degrees C (optimally at 70 degrees C) and at pH 6.0-9.5 (optimally at pH 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007690-0

    authors: Zhang XQ,Ying Y,Ye Y,Xu XW,Zhu XF,Wu M

    更新日期:2010-04-01 00:00:00

  • Metallosphaera tengchongensis sp. nov., an acidothermophilic archaeon isolated from a hot spring.

    abstract::Two novel acidothermophilic archaea, strains Ric-A(T) and Ric-F, were isolated from muddy water samples of a sulfuric hot spring located in Tengchong County, Yunnan Province, PR China. The strains were aerobic and facultatively chemolithoautotrophic. Both strains could oxidize S(0) and K2S4O6 for autotrophic growth, a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.070870-0

    authors: Peng TJ,Liu LJ,Liu C,Yang ZF,Liu SJ,Jiang CY

    更新日期:2015-02-01 00:00:00

  • Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China.

    abstract::A moderately halophilic, Gram-positive coccus, designated strain W24(T), was isolated from saline soil in Qinghai province, China. The isolate was able to grow at salinities of 0-24 % (w/v) NaCl (optimally at 8 %, w/v), at pH 5.5-9.0 (optimally at pH 7.5) and at 8-43 degrees C (optimally at 28 degrees C). The genomic ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65467-0

    authors: Wang X,Xue Y,Yuan S,Zhou C,Ma Y

    更新日期:2008-07-01 00:00:00

  • Dietzia alimentaria sp. nov., isolated from a traditional Korean food.

    abstract::An actinobacterial strain, designated 72(T), was isolated from a traditional salt-fermented seafood in Korea. Colonies were coral red and cells were Gram-reaction-positive, non-motile rods. Strain 72(T) grew with 0-10 % (w/v) NaCl, at pH 7-10 and at 15-37 °C. Optimum growth conditions were 2 % NaCl, pH 7.0 and 30 °C. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.021501-0

    authors: Kim J,Roh SW,Choi JH,Jung MJ,Nam YD,Kim MS,Park EJ,Shin KS,Bae JW

    更新日期:2011-09-01 00:00:00

  • Zygotorulaspora chibaensis sp. nov. and Zygotorulaspora danielsina sp. nov., novel ascomycetous yeast species from tree bark and soil.

    abstract::Multiple isolates belonging to the ascomycetous genus Zygotorulaspora were obtained from forest soils and tree bark in Shiba Prefecture in Japan, and Lake Daniels, Lewis Pass, in New Zealand. Phylogenetic analyses employing combined sequences of the D1/D2 domain and ITS region support the recognition of two new specie...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002889

    authors: Carvalho C,Tomás A,Libkind D,Imanishi Y,Sampaio JP

    更新日期:2018-08-01 00:00:00

  • Hymenobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil.

    abstract::A non-motile, rod-shaped, red-pigmented bacterium, designated strain BZ33r(T), was isolated from soil of an industrial site. Cells stained Gram-negative and were aerobic and psychrophilic, showing good growth at 1-20 °C. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain BZ33r(T) was related to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023465-0

    authors: Zhang DC,Busse HJ,Liu HC,Zhou YG,Schinner F,Margesin R

    更新日期:2011-04-01 00:00:00

  • Acidibrevibacterium fodinaquatile gen. nov., sp. nov., isolated from acidic mine drainage.

    abstract::A heterotrophic and acidophilic bacterial strain, G45-3T, was isolated from acidic mine drainage sampled in Fujian Province, PR China. Cells of strain G45-3T were Gram-stain-negative, non-spore-forming, non-motile and rod-shaped. Catalase and oxidase activities were positive. Strain G45-3T grew aerobically at 20-45 °C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003618

    authors: Muhadesi JB,Huang Y,Wang BJ,Jiang CY,Liu SJ

    更新日期:2019-10-01 00:00:00

  • Streptomyces shaanxiensis sp. nov., a blue pigment-producing streptomycete from sewage irrigation soil.

    abstract::A novel isolate belonging to the genus Streptomyces, strain CCNWHQ 0031(T), was isolated from soil in a sewage irrigation area in Shaanxi province, China. The isolate produced light greyish-blue aerial mycelium and dark blue diffusible pigment on Gause's synthetic agar. Strain CCNWHQ 0031(T) formed Spirales-type chain...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.029959-0

    authors: Lin YB,Wang XY,Fang H,Ma YN,Tang J,Tang M,Wei GH

    更新日期:2012-08-01 00:00:00

  • Deinococcus persicinus sp. nov., a radiation-resistant bacterium from soil.

    abstract::Two Gram-stain-negative, oxidase-negative, catalase-positive, aerobic and coccus-shaped bacterial strains, KSY3-6T and JSH6-18, were isolated from soil in South Korea. Strains KSY3-6T and JSH6-18 showed high resistance to gamma-ray and UVC irradiation. The 16S rRNA gene sequences of strains KSY3-6T and JSH6-18 showed ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001473

    authors: Jeon SH,Kang MS,Joo ES,Kim EB,Lim S,Jeong SW,Jung HY,Srinivasan S,Kim MK

    更新日期:2016-12-01 00:00:00

  • Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients.

    abstract::A re-evaluation of the taxonomic position of five strains, one assigned to Cronobacter sakazakii (strain 1330(T), isolated from spiced meat purchased in Slovakia), two previously assigned to Cronobacter genomospecies 1 (strains NCTC 9529(T) and 731, isolated from water and a leg infection, respectively) and two previo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.032292-0

    authors: Joseph S,Cetinkaya E,Drahovska H,Levican A,Figueras MJ,Forsythe SJ

    更新日期:2012-06-01 00:00:00

  • Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.

    abstract::A novel actinomycete, designated strain NEAU-Ht49T, was isolated from sea sand sampled in Sanya and characterized by using a polyphasic approach. The 16S rRNA gene sequence analysis showed that strain NEAU-Ht49T was most closely related to Actinomadura rhizosphaerae SDA37T (98.8 %), Actinomadura logoneensis NEAU-G17T ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003819

    authors: Hu J,Han C,Yu B,Zhao J,Guo X,Shen Y,Wang X,Xiang W

    更新日期:2020-02-01 00:00:00