Publisher Correction: Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer.


:In the original version of this Article, the sixth sentence of the abstract incorrectly read 'Most of the genes upregulated and with hypermethylated CGIs in the Alb-R26Met HCC model undergo the same change.', and should have read 'Most of the genes upregulated and with hypermethylated CGIs in the Alb-R26Met HCC model undergo the same change in a large proportion of HCC patients.'. This has been corrected in both the PDF and HTML versions of the Article.


Nat Commun


Nature communications


Arechederra M,Daian F,Yim A,Bazai SK,Richelme S,Dono R,Saurin AJ,Habermann BH,Maina F




Has Abstract


2018-09-25 00:00:00












  • 2N+4-rule and an atlas of bulk optical resonances of zigzag graphene nanoribbons.

    abstract::Development of on-chip integrated carbon-based optoelectronic nanocircuits requires fast and non-invasive structural characterization of their building blocks. Recent advances in synthesis of single wall carbon nanotubes and graphene nanoribbons allow for their use as atomically precise building blocks. However, while...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Payod RB,Grassano D,Santos GNC,Levshov DI,Pulci O,Saroka VA

    更新日期:2020-01-03 00:00:00

  • Demographic amplification is a predictor of invasiveness among plants.

    abstract::Invasive plant species threaten native biodiversity, ecosystems, agriculture, industry and human health worldwide, lending urgency to the search for predictors of plant invasiveness outside native ranges. There is much conflicting evidence about which plant characteristics best predict invasiveness. Here we use a glob...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Jelbert K,Buss D,McDonald J,Townley S,Franco M,Stott I,Jones O,Salguero-Gómez R,Buckley Y,Knight T,Silk M,Sargent F,Rolph S,Wilson P,Hodgson D

    更新日期:2019-12-06 00:00:00

  • Determining the rotation direction in pulsars.

    abstract::Pulsars are rotating neutron stars emitting lighthouse-like beams. Owing to their unique properties, pulsars are a unique astrophysical tool to test general relativity, inform on matter in extreme conditions, and probe galactic magnetic fields. Understanding pulsar physics and emission mechanisms is critical to these ...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Gueroult R,Shi Y,Rax JM,Fisch NJ

    更新日期:2019-07-19 00:00:00

  • Elucidation of the biosynthesis of carnosic acid and its reconstitution in yeast.

    abstract::Rosemary extracts containing the phenolic diterpenes carnosic acid and its derivative carnosol are approved food additives used in an increasingly wide range of products to enhance shelf-life, thanks to their high anti-oxidant activity. We describe here the elucidation of the complete biosynthetic pathway of carnosic ...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Scheler U,Brandt W,Porzel A,Rothe K,Manzano D,Božić D,Papaefthimiou D,Balcke GU,Henning A,Lohse S,Marillonnet S,Kanellis AK,Ferrer A,Tissier A

    更新日期:2016-10-05 00:00:00

  • Charge stripe order near the surface of 12-percent doped La₂-xSrxCuO₄.

    abstract::A collective order of spin and charge degrees of freedom into stripes has been predicted to be a possible ground state of hole-doped CuO(2) planes, which are the building blocks of high-temperature superconductors. In fact, stripe-like spin and charge order has been observed in various layered cuprate systems. For the...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Wu HH,Buchholz M,Trabant C,Chang CF,Komarek AC,Heigl F,Zimmermann MV,Cwik M,Nakamura F,Braden M,Schüßler-Langeheine C

    更新日期:2012-01-01 00:00:00

  • Ensemble-averaged Rabi oscillations in a ferromagnetic CoFeB film.

    abstract::Rabi oscillations describe the process whereby electromagnetic radiation interacts coherently with spin states in a non-equilibrium interaction. To date, Rabi oscillations have not been studied in one of the most common spin ensembles in nature: spins in ferromagnets. Here, using a combination of femtosecond laser pul...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Capua A,Rettner C,Yang SH,Phung T,Parkin SSP

    更新日期:2017-06-28 00:00:00

  • Publisher Correction: Electrosynthesis of high-entropy metallic glass nanoparticles for designer, multi-functional electrocatalysis.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误


    authors: Glasscott MW,Pendergast AD,Goines S,Bishop AR,Hoang AT,Renault C,Dick JE

    更新日期:2019-07-10 00:00:00

  • MicroRNA regulation of endothelial TREX1 reprograms the tumour microenvironment.

    abstract::Rather than targeting tumour cells directly, elements of the tumour microenvironment can be modulated to sensitize tumours to the effects of therapy. Here we report a unique mechanism by which ectopic microRNA-103 can manipulate tumour-associated endothelial cells to enhance tumour cell death. Using gain-and-loss of f...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Wilson R,Espinosa-Diez C,Kanner N,Chatterjee N,Ruhl R,Hipfinger C,Advani SJ,Li J,Khan OF,Franovic A,Weis SM,Kumar S,Coussens LM,Anderson DG,Chen CC,Cheresh DA,Anand S

    更新日期:2016-11-25 00:00:00

  • Drawing a high-resolution functional map of adeno-associated virus capsid by massively parallel sequencing.

    abstract::Adeno-associated virus (AAV) capsid engineering is an emerging approach to advance gene therapy. However, a systematic analysis on how each capsid amino acid contributes to multiple functions remains challenging. Here we show proof-of-principle and successful application of a novel approach, termed AAV Barcode-Seq, th...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Adachi K,Enoki T,Kawano Y,Veraz M,Nakai H

    更新日期:2014-01-01 00:00:00

  • Tunable multiphase dynamics of arginine and lysine liquid condensates.

    abstract::Liquid phase separation into two or more coexisting phases has emerged as a new paradigm for understanding subcellular organization, prebiotic life, and the origins of disease. The design principles underlying biomolecular phase separation have the potential to drive the development of novel liquid-based organelles an...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Fisher RS,Elbaum-Garfinkle S

    更新日期:2020-09-15 00:00:00

  • Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

    abstract::Zea mays is an important genetic model for elucidating transcriptional networks. Uncertainties about the complete structure of mRNA transcripts limit the progress of research in this system. Here, using single-molecule sequencing technology, we produce 111,151 transcripts from 6 tissues capturing ∼70% of the genes ann...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Wang B,Tseng E,Regulski M,Clark TA,Hon T,Jiao Y,Lu Z,Olson A,Stein JC,Ware D

    更新日期:2016-06-24 00:00:00

  • The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice.

    abstract::Post-translational protein modifications are systems designed to expand restricted genomic information through functional conversion of target molecules. Ubiquitin-like post-translational modifiers regulate numerous cellular events through their covalent linkages to target protein(s) by an enzymatic cascade analogous ...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Tatsumi K,Yamamoto-Mukai H,Shimizu R,Waguri S,Sou YS,Sakamoto A,Taya C,Shitara H,Hara T,Chung CH,Tanaka K,Yamamoto M,Komatsu M

    更新日期:2011-02-08 00:00:00

  • High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics.

    abstract::The ever-increasing speed and resolution of modern microscopes make the storage and post-processing of images challenging and prevent thorough statistical analyses in developmental biology. Here, instead of deploying massive storage and computing power, we exploit the spherical geometry of zebrafish embryos by computi...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Schmid B,Shah G,Scherf N,Weber M,Thierbach K,Campos CP,Roeder I,Aanstad P,Huisken J

    更新日期:2013-01-01 00:00:00

  • Fibre-optic metadevice for all-optical signal modulation based on coherent absorption.

    abstract::Recently, coherent control of the optical response of thin films in standing waves has attracted considerable attention, ranging from applications in excitation-selective spectroscopy and nonlinear optics to all-optical image processing. Here, we show that integration of metamaterial and optical fibre technologies all...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Xomalis A,Demirtzioglou I,Plum E,Jung Y,Nalla V,Lacava C,MacDonald KF,Petropoulos P,Richardson DJ,Zheludev NI

    更新日期:2018-01-12 00:00:00

  • Purging of highly deleterious mutations through severe bottlenecks in Alpine ibex.

    abstract::Human activity has caused dramatic population declines in many wild species. The resulting bottlenecks have a profound impact on the genetic makeup of a species with unknown consequences for health. A key genetic factor for species survival is the evolution of deleterious mutation load, but how bottleneck strength and...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Grossen C,Guillaume F,Keller LF,Croll D

    更新日期:2020-02-21 00:00:00

  • DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation.

    abstract::DNA methylation maintenance by DNMT1 is an essential process in mammals but molecular mechanisms connecting DNA methylation patterns and enzyme activity remain elusive. Here, we systematically analyzed the specificity of DNMT1, revealing a pronounced influence of the DNA sequences flanking the target CpG site on DNMT1...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Adam S,Anteneh H,Hornisch M,Wagner V,Lu J,Radde NE,Bashtrykov P,Song J,Jeltsch A

    更新日期:2020-07-24 00:00:00

  • Diffusion in translucent media.

    abstract::Diffusion is the result of repeated random scattering. It governs a wide range of phenomena from Brownian motion, to heat flow through window panes, neutron flux in fuel rods, dispersion of light in human tissue, and electronic conduction. It is universally acknowledged that the diffusion approach to describing wave t...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Shi Z,Genack AZ

    更新日期:2018-05-10 00:00:00

  • Region-specific and state-dependent action of striatal GABAergic interneurons.

    abstract::Striatum processes a wide range of functions including goal-directed behavior and habit formation, respectively encoded by the dorsomedial striatum (DMS) and dorsolateral striatum (DLS). GABAergic feedforward inhibition is known to control the integration of cortical information by striatal projection neurons (SPNs). ...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Fino E,Vandecasteele M,Perez S,Saudou F,Venance L

    更新日期:2018-08-21 00:00:00

  • High-power lithium-selenium batteries enabled by atomic cobalt electrocatalyst in hollow carbon cathode.

    abstract::Selenium cathodes have attracted considerable attention due to high electronic conductivity and volumetric capacity comparable to sulphur cathodes. However, practical development of lithium-selenium batteries has been hindered by the low selenium reaction activity with lithium, high volume changes and rapid capacity f...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Tian H,Tian H,Wang S,Chen S,Zhang F,Song L,Liu H,Liu J,Wang G

    更新日期:2020-10-06 00:00:00

  • Electron-vibration coupling induced renormalization in the photoemission spectrum of diamondoids.

    abstract::The development of theories and methods devoted to the accurate calculation of the electronic quasi-particle states and levels of molecules, clusters and solids is of prime importance to interpret the experimental data. These quantum systems are often modelled by using the Born-Oppenheimer approximation where the coup...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Gali A,Demján T,Vörös M,Thiering G,Cannuccia E,Marini A

    更新日期:2016-04-22 00:00:00

  • Interfacial control of oxygen vacancy doping and electrical conduction in thin film oxide heterostructures.

    abstract::Oxygen vacancies in proximity to surfaces and heterointerfaces in oxide thin film heterostructures have major effects on properties, resulting, for example, in emergent conduction behaviour, large changes in metal-insulator transition temperatures or enhanced catalytic activity. Here we report the discovery of a means...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Veal BW,Kim SK,Zapol P,Iddir H,Baldo PM,Eastman JA

    更新日期:2016-06-10 00:00:00

  • A comprehensive multiscale framework for simulating optogenetics in the heart.

    abstract::Optogenetics has emerged as an alternative method for electrical control of the heart, where illumination is used to elicit a bioelectric response in tissue modified to express photosensitive proteins (opsins). This technology promises to enable evocation of spatiotemporally precise responses in targeted cells or tiss...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Boyle PM,Williams JC,Ambrosi CM,Entcheva E,Trayanova NA

    更新日期:2013-01-01 00:00:00

  • Protein-targeted corona phase molecular recognition.

    abstract::Corona phase molecular recognition (CoPhMoRe) uses a heteropolymer adsorbed onto and templated by a nanoparticle surface to recognize a specific target analyte. This method has not yet been extended to macromolecular analytes, including proteins. Herein we develop a variant of a CoPhMoRe screening procedure of single-...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Bisker G,Dong J,Park HD,Iverson NM,Ahn J,Nelson JT,Landry MP,Kruss S,Strano MS

    更新日期:2016-01-08 00:00:00

  • Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona.

    abstract::Large-scale, unbiased proteomics studies are constrained by the complexity of the plasma proteome. Here we report a highly parallel protein quantitation platform integrating nanoparticle (NP) protein coronas with liquid chromatography-mass spectrometry for efficient proteomic profiling. A protein corona is a protein l...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Blume JE,Manning WC,Troiano G,Hornburg D,Figa M,Hesterberg L,Platt TL,Zhao X,Cuaresma RA,Everley PA,Ko M,Liou H,Mahoney M,Ferdosi S,Elgierari EM,Stolarczyk C,Tangeysh B,Xia H,Benz R,Siddiqui A,Carr SA,Ma P,Lan

    更新日期:2020-07-22 00:00:00

  • Single-shot link discovery for terahertz wireless networks.

    abstract::Of the many challenges in building a wireless network at terahertz frequencies, link discovery remains one of the most critical and least explored. In a network of mobile receivers using narrow directional beams, how do the nodes rapidly locate each other? This direction information is crucial for beam forming and ste...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Ghasempour Y,Shrestha R,Charous A,Knightly E,Mittleman DM

    更新日期:2020-04-24 00:00:00

  • Rapid single-wavelength lightsheet localization microscopy for clarified tissue.

    abstract::Optical super-resolution microscopy allows nanoscale imaging of protein molecules in intact biological tissues. However, it is still challenging to perform large volume super-resolution imaging for entire animal organs. Here we develop a single-wavelength Bessel lightsheet method, optimized for refractive-index matchi...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Chu LA,Lu CH,Yang SM,Liu YT,Feng KL,Tsai YC,Chang WK,Wang WC,Chang SW,Chen P,Lee TK,Hwu YK,Chiang AS,Chen BC

    更新日期:2019-10-18 00:00:00

  • Surfaces away from horizons are not thermodynamic.

    abstract::Since the 1970s, it has been known that black-hole (and other) horizons are truly thermodynamic. More generally, surfaces which are not horizons have also been conjectured to behave thermodynamically. Initially, for surfaces microscopically expanded from a horizon to so-called stretched horizons, and more recently, fo...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Wang ZW,Braunstein SL

    更新日期:2018-07-30 00:00:00

  • Irisin is a pro-myogenic factor that induces skeletal muscle hypertrophy and rescues denervation-induced atrophy.

    abstract::Exercise induces expression of the myokine irisin, which is known to promote browning of white adipose tissue and has been shown to mediate beneficial effects following exercise. Here we show that irisin induces expression of a number of pro-myogenic and exercise response genes in myotubes. Irisin increases myogenic d...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Reza MM,Subramaniyam N,Sim CM,Ge X,Sathiakumar D,McFarlane C,Sharma M,Kambadur R

    更新日期:2017-10-24 00:00:00

  • Surface-wetting effects on the liquid-liquid transition of a single-component molecular liquid.

    abstract::Even a single-component liquid may have more than two liquid states. The transition between them is called a 'liquid-liquid transition' (LLT). Such LLTs have recently attracted considerable attention mainly because of the fundamental interest in the physical origin of this counter-intuitive phenomenon. In this study, ...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Murata K,Tanaka H

    更新日期:2010-05-04 00:00:00

  • The self-interaction of native TDP-43 C terminus inhibits its degradation and contributes to early proteinopathies.

    abstract::The degraded, misfolded C terminus of TAR DNA-binding protein-43 is associated with a wide spectrum of neurodegenerative diseases, particularly frontotemporal lobar degeneration with ubiquitin-positive inclusions and amyotrophic lateral sclerosis. However, the precise mechanism of pathological cleavage of the TAR DNA-...

    journal_title:Nature communications

    pub_type: 杂志文章


    authors: Wang IF,Chang HY,Hou SC,Liou GG,Way TD,James Shen CK

    更新日期:2012-04-03 00:00:00