Abstract:
:Hypochlorous acid (HOCl) is a critical member of the reactive oxygen species (ROS) produced by immune cells to fight infections. On the other hand, HOCl in homeostasis causes oxidative damage to biomolecules and is linked to many diseases, including inflammatory, neurodegenerative, and cardiovascular diseases. Herein, we detail a procedure for the preparation of a boron-dipyrromethene (BODIPY)-derived fluorescent probe for HOCl (BClO) and its application as an imaging reagent in living cells. BClO is synthesized in one pot through a four-step procedure that is nearly the same as that for conventional BODIPY dye preparation, except for the ratio of starting materials. BClO has an extremely rapid response (saturated within seconds) and is ultrasensitive to HOCl. The detection limit of BClO reaches the subnanomolar range, which is the highest HOCl sensitivity to date. Taking advantage of the ultrasensitive character of BClO, we have previously demonstrated its ability to detect endogenous HOCl generated by macrophages and shown that it can also be used to discriminate cancer cell lines (which show high HOCl production) from non-cancer cell lines (which show low HOCl production). The protocol requires ~2 d for probe synthesis and up to ~18 h for fluorescence imaging and flow cytometry assays.
journal_name
Nat Protocjournal_title
Nature protocolsauthors
Zhu H,Zhang Z,Long S,Du J,Fan J,Peng Xdoi
10.1038/s41596-018-0041-6subject
Has Abstractpub_date
2018-10-01 00:00:00pages
2348-2361issue
10eissn
1754-2189issn
1750-2799pii
10.1038/s41596-018-0041-6journal_volume
13pub_type
杂志文章相关文献
Nature Protocols文献大全abstract::High-throughput transcriptional analysis has unveiled a myriad of novel RNAs. However, technical constraints in RNA sequencing library preparation and platform performance hamper the identification of rare transcripts contained within the RNA repertoire. Herein we present targeted-RNA directional sequencing (TARDIS), ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2015.120
更新日期:2015-12-01 00:00:00
abstract::Small-angle X-ray scattering (SAXS) and small-angle neutron scattering (SANS) are techniques used to extract structural parameters and determine the overall structures and shapes of biological macromolecules, complexes and assemblies in solution. The scattering intensities measured from a sample contain contributions ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2016.113
更新日期:2016-11-01 00:00:00
abstract::The bimolecular fluorescence complementation (BiFC) assay is a powerful tool for visualizing and identifying protein interactions in living cells. This assay is based on the principle of protein-fragment complementation, using two nonfluorescent fragments derived from fluorescent proteins. When two fragments are broug...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2008.16
更新日期:2008-01-01 00:00:00
abstract::A major challenge in the analysis of gene expression microarray data is to extract meaningful biological knowledge out of the huge volume of raw data. Expander (EXPression ANalyzer and DisplayER) is an integrated software platform for the analysis of gene expression data, which is freely available for academic use. It...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2009.230
更新日期:2010-02-01 00:00:00
abstract::Multipotent neural crest stem cells (NCSCs) have the potential to generate a wide range of cell types including melanocytes; peripheral neurons; and smooth muscle, bone, cartilage and fat cells. This protocol describes in detail how to perform a highly efficient, lineage-specific differentiation of human pluripotent c...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2012.156
更新日期:2013-01-01 00:00:00
abstract::Laser-mediated gene transfection into mammalian cells has recently emerged as a powerful alternative to more traditional transfection techniques. In particular, the use of a femtosecond-pulsed laser operating in the near-infrared (NIR) region has been proven to provide single-cell selectivity, localized delivery, low ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2013.071
更新日期:2013-06-01 00:00:00
abstract::A fluorescence-based microarray technique that does not require target DNA labeling is detailed. This 'label-free' approach utilizes a cationic, water-soluble conjugated polymer PFBT (poly[9,9'-bis(6''-(N,N,N-trimethylammonium)hexyl)fluorene-co-alt-4,7-(2,1,3-benzothiadiazole) dibromide]), and neutral PNA (peptide nuc...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2007.307
更新日期:2007-01-01 00:00:00
abstract::Mass spectrometry imaging (MSI) enables label-free spatial mapping of hundreds of biomolecules in tissue sections. This capability provides valuable information on tissue heterogeneity that is difficult to obtain using population-averaged assays. Despite substantial developments in both instrumentation and methodology...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/s41596-019-0237-4
更新日期:2019-12-01 00:00:00
abstract::Large-insert BAC (bacterial artificial chromosome) and BIBAC (binary BAC) libraries are essential for modern genomics research for all organisms. We helped pioneer the BAC and BIBAC technologies, and by using them we have constructed hundreds of BAC and BIBAC libraries for different species of plants, animals, marine ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2011.456
更新日期:2012-02-16 00:00:00
abstract::Telomeres have emerged as crucial cellular elements in aging and various diseases including cancer. To measure the average length of telomere repeats in cells, we describe our protocols that use fluorescent in situ hybridization (FISH) with labeled peptide nucleic acid (PNA) probes specific for telomere repeats in com...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2006.263
更新日期:2006-01-01 00:00:00
abstract::The study of angiogenic endothelial cells (ECs) has in recent years greatly stimulated multiple fields of vascular biology research. A number of cellular models and numerous complex developmental, manipulatory and tumor animal models have been developed to study angiogenesis in vitro and in vivo. To connect the versat...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2009.96
更新日期:2009-01-01 00:00:00
abstract::The accurate knowledge of receptor kinetics is crucial to our understanding of cell signal transduction in general and neural function in particular. The classical technique of probing membrane receptors on a millisecond scale involves placing a recording micropipette with a membrane patch in front of a double-barrel ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2013.075
更新日期:2013-01-01 00:00:00
abstract::The systematic mapping of protein interactions by bait-prey techniques, including affinity purification-mass spectrometry or the yeast two-hybrid system, contributes a unique and relevant perspective on the comprehensive picture of cellular machines. We describe here a protocol for statistical analysis of node-and-edg...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2009.26
更新日期:2009-01-01 00:00:00
abstract::RNA production using in vivo transcription by Escherichia coli allows preparation of milligram quantities of RNA for biochemical, biophysical and structural investigations. We describe here a generic protocol for the overproduction and purification of recombinant RNA using liquid chromatography. The strategy utilizes ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2009.67
更新日期:2009-01-01 00:00:00
abstract::AMPylation (adenylylation) has been recognized as an important post-translational modification that is used by pathogens to regulate host cellular proteins and their associated signaling pathways. AMPylation has potential functions in various cellular processes, and it is widely conserved across both prokaryotes and e...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2015.044
更新日期:2015-05-01 00:00:00
abstract::In the past few decades, marine natural products bioprospecting has yielded a considerable number of drug candidates. Two marine natural products have recently been admitted as new drugs: Prialt (also known as ziconotide) as a potent analgesic for severe chronic pain and Yondelis (known also as trabectedin or E-743) a...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2008.182
更新日期:2008-01-01 00:00:00
abstract::Transitivity Clustering is a method for the partitioning of biological data into groups of similar objects, such as genes, for instance. It provides integrated access to various functions addressing each step of a typical cluster analysis. To facilitate this, Transitivity Clustering is accessible online and offers thr...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2010.197
更新日期:2011-03-01 00:00:00
abstract::Differentiation of stem cells to hepatocytes has industrial applications, as well as the potential to develop new therapeutic strategies for liver disease. The protocol described here, sequentially using cytokines that are known to have a role in liver embryonic development, efficiently differentiates rat multipotent ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2010.80
更新日期:2010-07-01 00:00:00
abstract::Over the past 20 years, the starlet sea anemone, Nematostella vectensis, a small estuarine animal, has emerged as a powerful model system for field and laboratory studies of development, evolution, genomics, molecular biology and toxicology. Here we describe how to collect Nematostella, culture it through its entire s...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2013.044
更新日期:2013-05-01 00:00:00
abstract::The forced swim test (FST) is one of the most commonly used animal models for assessing antidepressant-like behavior. This protocol details using the FST in rats, which takes place over 48 h and is followed by the video analysis of the behavior. The swim test involves the scoring of active (swimming and climbing) or p...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2012.044
更新日期:2012-05-03 00:00:00
abstract::The glycocalyx comprises glycosylated proteins and lipids and fcorms the outermost layer of cells. It is involved in fundamental inter- and intracellular processes, including non-self-cell and self-cell recognition, cell signaling, cellular structure maintenance, and immune protection. Characterization of the glycocal...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/s41596-020-0350-4
更新日期:2020-08-01 00:00:00
abstract::This protocol describes a method combining phase-contrast and fluorescence microscopy, Raman spectroscopy and optical tweezers to characterize the germination of single bacterial spores. The characterization consists of the following steps: (i) loading heat-activated dormant spores into a temperature-controlled micros...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2011.307
更新日期:2011-05-01 00:00:00
abstract::The adeno-associated virus (AAV) is one of the most promising viral vectors for human gene therapy. As with any potential therapeutic system, a thorough understanding of it at the in vitro and in vivo levels is required. Over the years, numerous methods have been developed to better characterize AAV vectors. These met...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2006.207
更新日期:2006-01-01 00:00:00
abstract::At present, several assays that use radioisotope labeling to quantify the degradation of long-lived proteins have been developed to measure autophagic flux. Here, we describe a nonradioactive pulse-chase protocol using L-azidohomoalanine (AHA) labeling to quantify long-lived protein degradation during autophagy. AHA i...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2016.160
更新日期:2017-12-01 00:00:00
abstract::The scototaxis (dark/light preference) protocol is a behavioral model for fish that is being validated to assess the antianxiety effects of pharmacological agents and the behavioral effects of toxic substances, and to investigate the (epi)genetic bases of anxiety-related behavior. Briefly, a fish is placed in a centra...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2009.225
更新日期:2010-02-01 00:00:00
abstract::New technologies have recently enabled saturation mutagenesis and functional analysis of nearly all possible variants of regulatory elements or proteins of interest in single experiments. Here we discuss the past, present, and future of such multiplexed (functional) assays for variant effects (MAVEs). MAVEs provide de...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2016.135
更新日期:2016-10-01 00:00:00
abstract::The protein called 'small ubiquitin-like modifier' (SUMO) is post-translationally linked to target proteins at the ɛ-amino group of lysine residues. This 'SUMOylation' alters the behavior of the target protein, a change that is utilized to regulate diverse cellular processes. Understanding the target-specific conseque...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2015.095
更新日期:2015-09-01 00:00:00
abstract::A procedure for the conversion of a symmetrical ketone to an enantiomerically pure lactam is described. The technique described here involves a ring-expansion reaction of a 4-substituted cyclohexanone accomplished with a chiral 1,3-azidopropanol derivative. The procedure entails first a one-step preparation of (R)-1-p...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2007.518
更新日期:2008-01-01 00:00:00
abstract::Growing evidence indicates that RNA G-quadruplexes have important roles in various processes such as transcription, translation, regulation of telomere length, and formation of telomeric heterochromatin. Investigation of RNA G-quadruplex structures associated with biological events is therefore essential to understand...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/nprot.2017.156
更新日期:2018-04-01 00:00:00
abstract::The transmembrane (TM) anchors of cell surface proteins have been one of the 'blind spots' in structural biology because they are generally very hydrophobic, sometimes dynamic, and thus difficult targets for structural characterization. A plethora of examples show these membrane anchors are not merely anchors but can ...
journal_title:Nature protocols
pub_type: 杂志文章
doi:10.1038/s41596-019-0188-9
更新日期:2019-08-01 00:00:00