Decoding the LncRNA transcriptome of esophageal cancer: identification of clinically relevant LncRNAs.

Abstract:

AIM:LncRNAs may act as promising biomarkers in esophageal cancer (EC). Here, we illustrate the LncRNA profile and their clinical relevance in EC. PATIENTS & METHODS:In this study, we utilized the Cancer Genome Atlas RNA-sequencing and clinical data from 186 patients and 13 normal samples. Various statistical and gene set enrichment analysis (GSEA) were performed to identify the biomarkers. RESULTS:In a differential expression analysis, we identified a total of 127 LncRNAs with more differentially expressed in EC compared with normal and showed their function using guilt-by-association analysis. We generated a LncRNAs prognostic signature for EC. Using Cox regression analysis, we showed the prognostic ability of LncRNAs' prognostic signature in training and test-cohort (p-value < 0.01). CONCLUSION:In summary, we explored the LncRNA expression profile and their clinical utility in EC patients.

journal_name

Biomark Med

journal_title

Biomarkers in medicine

authors

Khadirnaikar S,Narayanan SP,Shukla SK

doi

10.2217/bmm-2018-0032

subject

Has Abstract

pub_date

2018-10-01 00:00:00

pages

1083-1093

issue

10

eissn

1752-0363

issn

1752-0371

journal_volume

12

pub_type

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