Chemical Probe To Monitor the Parkinsonism-Associated Protein DJ-1 in Live Cells.

Abstract:

:Reactive oxygen species (ROS) play an important role in the onset of Parkinson's disease (PD), and deciphering protective mechanisms is a major goal for therapeutic development. Here, DJ-1 (PARK7) gained major attention when a conserved cysteine residue with a putative role in oxidative stress sensing/protection was linked to PD. Inspired by previous studies with a bacterial homologue of DJ-1, several amino-epoxycylcohexenones were screened for enzyme inhibition, and a chemical probe with specificity for the human ortholog was selected for cellular studies. The probe selectively labeled the cysteine oxidation sensor and whole proteome analysis in HeLa, A549, and SHSY5Y cell lines confirmed strong enrichment of reduced DJ-1 as the most prominent target. Increasing levels of oxidative stress diminished this signal demonstrating the utility of our tool compound for selective in situ monitoring of this important biomarker in its reduced state.

journal_name

ACS Chem Biol

journal_title

ACS chemical biology

authors

Drechsel J,Mandl FA,Sieber SA

doi

10.1021/acschembio.8b00633

subject

Has Abstract

pub_date

2018-08-17 00:00:00

pages

2016-2019

issue

8

eissn

1554-8929

issn

1554-8937

journal_volume

13

pub_type

杂志文章
  • Identification of pim kinases as novel targets for PJ34 with confounding effects in PARP biology.

    abstract::Small molecules are widely used in chemical biology without complete knowledge of their target profile, at risk of deriving conclusions that ignore potential confounding effects from unknown off-target interactions. The prediction and further experimental confirmation of novel affinities for PJ34 on Pim1 (IC(50) = 3.7...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300317y

    authors: Antolín AA,Jalencas X,Yélamos J,Mestres J

    更新日期:2012-12-21 00:00:00

  • Furoxan Nitric Oxide Donors Disperse Pseudomonas aeruginosa Biofilms, Accelerate Growth, and Repress Pyoverdine Production.

    abstract::The use of nitric oxide (NO) as a signal for biofilm dispersal has been shown to increase the susceptibility of many biofilms to antibiotics, promoting their eradication. The delivery of NO to biofilms can be achieved by using NO donors with different kinetics and properties of NO release that can influence their effi...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00256

    authors: Poh WH,Barraud N,Guglielmo S,Lazzarato L,Rolando B,Fruttero R,Rice SA

    更新日期:2017-08-18 00:00:00

  • Myricetin Reduces Toxic Level of CAG Repeats RNA in Huntington's Disease (HD) and Spino Cerebellar Ataxia (SCAs).

    abstract::Huntington's disease (HD) is a neurodegenerative disorder that is caused by abnormal expansion of CAG repeats in the HTT gene. The transcribed mutant RNA contains expanded CAG repeats that translate into a mutant huntingtin protein. This expanded CAG repeat also causes mis-splicing of pre-mRNA due to sequestration of ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00699

    authors: Khan E,Tawani A,Mishra SK,Verma AK,Upadhyay A,Kumar M,Sandhir R,Mishra A,Kumar A

    更新日期:2018-01-19 00:00:00

  • Cell-Penetrating Peptides Escape the Endosome by Inducing Vesicle Budding and Collapse.

    abstract::Cell-penetrating peptides (CPPs) are capable of delivering membrane-impermeable cargoes (including small molecules, peptides, proteins, nucleic acids, and nanoparticles) into the cytosol of mammalian cells and have the potential to revolutionize biomedical research and drug discovery. However, the mechanism of action ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00478

    authors: Sahni A,Qian Z,Pei D

    更新日期:2020-09-18 00:00:00

  • Errors in translation cause selective neurodegeneration.

    abstract::The 3D structure of a protein is determined by the unique sequence of amino acid residues comprising the polypeptide chain. Sequence changes can cause protein misfolding, a potentially toxic phenomenon implicated in various neurodegenerative disorders. In a recent paper, translational misincorporation is proposed to b...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb6004068

    authors: Rochet JC

    更新日期:2006-10-24 00:00:00

  • Profiling heparin-chemokine interactions using synthetic tools.

    abstract::Glycosaminoglycans (GAGs), such as heparin or heparan sulfate, are required for the in vivo function of chemokines. Chemokines play a crucial role in the recruitment of leukocyte subsets to sites of inflammation and lymphocytes trafficking. GAG-chemokine interactions mediate cell migration and determine which leukocyt...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb700159m

    authors: de Paz JL,Moseman EA,Noti C,Polito L,von Andrian UH,Seeberger PH

    更新日期:2007-11-20 00:00:00

  • Turn-on Fluorene Push-Pull Probes with High Brightness and Photostability for Visualizing Lipid Order in Biomembranes.

    abstract::The rational design of environmentally sensitive dyes with superior properties is critical for elucidating the fundamental biological processes and understanding the biophysical behavior of cell membranes. In this study, a novel group of fluorene-based push-pull probes was developed for imaging membrane lipids. The de...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00658

    authors: Shaya J,Collot M,Bénailly F,Mahmoud N,Mély Y,Michel BY,Klymchenko AS,Burger A

    更新日期:2017-12-15 00:00:00

  • Reporter enzyme inhibitor study to aid assembly of orthogonal reporter gene assays.

    abstract::Reporter gene assays (RGAs) are commonly used to measure biological pathway modulation by small molecules. Understanding how such compounds interact with the reporter enzyme is critical to accurately interpret RGA results. To improve our understanding of reporter enzymes and to develop optimal RGA systems, we investig...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb3007264

    authors: Ho PI,Yue K,Pandey P,Breault L,Harbinski F,McBride AJ,Webb B,Narahari J,Karassina N,Wood KV,Hill A,Auld DS

    更新日期:2013-05-17 00:00:00

  • Stepwise Loop Insertion Strategy for Active Site Remodeling to Generate Novel Enzyme Functions.

    abstract::The remodeling of active sites to generate novel biocatalysts is an attractive and challenging task. We developed a stepwise loop insertion strategy (StLois), in which randomized residue pairs are inserted into active site loops. The phosphotriesterase-like lactonase from Geobacillus kaustophilus (GkaP-PLL) was used t...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00018

    authors: Hoque MA,Zhang Y,Chen L,Yang G,Khatun MA,Chen H,Hao L,Feng Y

    更新日期:2017-05-19 00:00:00

  • In vitro and in vivo characterization of a tunable dual-reactivity probe of the Nrf2-ARE pathway.

    abstract::The cell utilizes the Keap1/Nrf2-ARE signaling pathway to detoxify harmful chemicals in order to protect itself from oxidative stress and to maintain its reducing environment. When exposed to oxidative stress and xenobiotic inducers, the redox sensitive Keap1 is covalently modified at specific cysteine residues. Conse...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4000103

    authors: Wang R,Mason DE,Choe KP,Lewin AS,Peters EC,Luesch H

    更新日期:2013-08-16 00:00:00

  • The Supersized Class III Lanthipeptide Stackepeptin Displays Motif Multiplication in the Core Peptide.

    abstract::Lanthipeptides are ribosomally synthesized and post-translationally modified peptides bearing the characteristic amino acids lanthionine and/or labionin. Here, we report on the discovery and characterization of the stackepeptins, produced by the Actinomycete Stackebrandtia nassauensis DSM-44728(T). The stackepeptins a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00651

    authors: Jungmann NA,van Herwerden EF,Hügelland M,Süssmuth RD

    更新日期:2016-01-15 00:00:00

  • Membrane Curvature Affects the Formation of α-Hemolysin Nanopores.

    abstract::Membrane proteins perform their functions within or on the lipid membrane, and lipid compositions are known to affect membrane protein integration and activity. Recently, the geometric aspect of membrane curvature was shown to play an important role in membrane protein behavior. Certain membrane proteins are known to ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00107

    authors: Fujii S,Matsuura T,Yomo T

    更新日期:2015-07-17 00:00:00

  • Targeting native adult heart progenitors with cardiogenic small molecules.

    abstract::Targeting native progenitors with small molecule pharmaceuticals that direct cell fate decisions is an attractive approach for regenerative medicine. Here, we show that 3,5-disubstituted isoxazoles (Isx), stem cell-modulator small molecules originally recovered in a P19 embryonal carcinoma cell-based screen, directed ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb200525q

    authors: Russell JL,Goetsch SC,Aguilar HR,Frantz DE,Schneider JW

    更新日期:2012-06-15 00:00:00

  • CB-6644 Is a Selective Inhibitor of the RUVBL1/2 Complex with Anticancer Activity.

    abstract::RUVBL1 and RUVBL2 are ATPases associated with diverse cellular activities (AAAs) that form a complex involved in a variety of cellular processes, including chromatin remodeling and regulation of gene expression. RUVBLs have a strong link to oncogenesis, where overexpression is correlated with tumor growth and poor pro...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00904

    authors: Assimon VA,Tang Y,Vargas JD,Lee GJ,Wu ZY,Lou K,Yao B,Menon MK,Pios A,Perez KC,Madriaga A,Buchowiecki PK,Rolfe M,Shawver L,Jiao X,Le Moigne R,Zhou HJ,Anderson DJ

    更新日期:2019-02-15 00:00:00

  • Selective small molecule probes for the hypoxia inducible factor (HIF) prolyl hydroxylases.

    abstract::The hypoxia inducible factor (HIF) system is central to the signaling of low oxygen (hypoxia) in animals. The levels of HIF-α isoforms are regulated in an oxygen-dependent manner by the activity of the HIF prolyl-hydroxylases (PHD or EGLN enzymes), which are Fe(II) and 2-oxoglutarate (2OG) dependent oxygenases. Here, ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400088q

    authors: Chowdhury R,Candela-Lena JI,Chan MC,Greenald DJ,Yeoh KK,Tian YM,McDonough MA,Tumber A,Rose NR,Conejo-Garcia A,Demetriades M,Mathavan S,Kawamura A,Lee MK,van Eeden F,Pugh CW,Ratcliffe PJ,Schofield CJ

    更新日期:2013-07-19 00:00:00

  • Catalytic mechanisms and biocatalytic applications of aspartate and methylaspartate ammonia lyases.

    abstract::Ammonia lyases catalyze the formation of α,β-unsaturated bonds by the elimination of ammonia from their substrates. This conceptually straightforward reaction has been the emphasis of many studies, with the main focus on the catalytic mechanism of these enzymes and/or the use of these enzymes as catalysts for the synt...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb3002792

    authors: de Villiers M,Puthan Veetil V,Raj H,de Villiers J,Poelarends GJ

    更新日期:2012-10-19 00:00:00

  • Cruentaren A binds F1F0 ATP synthase to modulate the Hsp90 protein folding machinery.

    abstract::The molecular chaperone Hsp90 requires the assistance of immunophilins, co-chaperones, and partner proteins for the conformational maturation of client proteins. Hsp90 inhibition represents a promising anticancer strategy due to the dependence of numerous oncogenic signaling pathways upon Hsp90 function. Historically,...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400906e

    authors: Hall JA,Kusuma BR,Brandt GE,Blagg BS

    更新日期:2014-04-18 00:00:00

  • Conformational Changes in Alkyl Chains Determine the Thermodynamic and Kinetic Binding Profiles of Carbonic Anhydrase Inhibitors.

    abstract::Thermodynamics and kinetics of protein-ligand binding are both important aspects for the design of novel drug molecules. Presently, thermodynamic data are collected with isothermal titration calorimetry, while kinetic data are mostly derived from surface plasmon resonance. The new method of kinITC provides both thermo...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00895

    authors: Glöckner S,Ngo K,Sager CP,Hüfner-Wulsdorf T,Heine A,Klebe G

    更新日期:2020-03-20 00:00:00

  • Allostery, Recognition of Nascent Peptidoglycan, and Cross-linking of the Cell Wall by the Essential Penicillin-Binding Protein 2x of Streptococcus pneumoniae.

    abstract::Transpeptidases, members of the penicillin-binding protein (PBP) families, catalyze cross-linking of the bacterial cell wall. This transformation is critical for the survival of bacteria, and it is the target of inhibition by β-lactam antibiotics. We report herein our structural insights into catalysis by the essentia...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00817

    authors: Bernardo-García N,Mahasenan KV,Batuecas MT,Lee M,Hesek D,Petráčková D,Doubravová L,Branny P,Mobashery S,Hermoso JA

    更新日期:2018-03-16 00:00:00

  • Traceless labeling of glycoproteins and its application to the study of glycoprotein-protein interactions.

    abstract::A new chemical method for the traceless labeling of glycoproteins with synthetic boronic acid (BA)-tosyl probes was successfully developed. The BA moiety acts as an affinity head to direct the formation of a cyclic boronate diester with the diol groups of glycans. Following this step, the electrophilic tosyl group is ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400631w

    authors: Yang YL,Lee YP,Yang YL,Lin PC

    更新日期:2014-02-21 00:00:00

  • Site-Specific Radiofluorination of Biomolecules with 8-[(18)F]-Fluorooctanoic Acid Catalyzed by Lipoic Acid Ligase.

    abstract::New methodologies for site-specifically radiolabeling proteins with (18)F are required to generate high quality radiotracers for preclinical and clinical applications with positron emission tomography. Herein, we report an approach by which we use lipoic acid ligase (LplA) to conjugate [(18)F]-fluorooctanoic acid to a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00172

    authors: Drake CR,Sevillano N,Truillet C,Craik CS,VanBrocklin HF,Evans MJ

    更新日期:2016-06-17 00:00:00

  • NanoLuc Complementation Reporter Optimized for Accurate Measurement of Protein Interactions in Cells.

    abstract::Protein-fragment complementation assays (PCAs) are widely used for investigating protein interactions. However, the fragments used are structurally compromised and have not been optimized nor thoroughly characterized for accurately assessing these interactions. We took advantage of the small size and bright luminescen...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00753

    authors: Dixon AS,Schwinn MK,Hall MP,Zimmerman K,Otto P,Lubben TH,Butler BL,Binkowski BF,Machleidt T,Kirkland TA,Wood MG,Eggers CT,Encell LP,Wood KV

    更新日期:2016-02-19 00:00:00

  • Cell Permeable Ratiometric Fluorescent Sensors for Imaging Phosphoinositides.

    abstract::Phosphoinositides are critical cell-signal mediators present on the plasma membrane. The dynamic change of phosphoinositide concentrations on the membrane including clustering and declustering mediates signal transduction. The importance of phosphoinositides is scored by the fact that they participate in almost all ce...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00067

    authors: Mondal S,Rakshit A,Pal S,Datta A

    更新日期:2016-07-15 00:00:00

  • Profiling substrates of protein arginine N-methyltransferase 3 with S-adenosyl-L-methionine analogues.

    abstract::Protein arginine N-methyltransferase 3 (PRMT3) belongs to the family of type I PRMTs and harbors the activity to use S-adenosyl-l-methionine (SAM) as a methyl-donor cofactor for protein arginine labeling. However, PRMT3's functions remain elusive with the lacked knowledge of its target scope in cellular settings. Insp...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4008259

    authors: Guo H,Wang R,Zheng W,Chen Y,Blum G,Deng H,Luo M

    更新日期:2014-02-21 00:00:00

  • Harnessing Fluorine-Sulfur Contacts and Multipolar Interactions for the Design of p53 Mutant Y220C Rescue Drugs.

    abstract::Many oncogenic mutants of the tumor suppressor p53 are conformationally unstable, including the frequently occurring Y220C mutant. We have previously developed several small-molecule stabilizers of this mutant. One of these molecules, PhiKan083, 1-(9-ethyl-9H-carbazole-3-yl)-N-methylmethanamine, binds to a mutation-in...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00315

    authors: Bauer MR,Jones RN,Baud MG,Wilcken R,Boeckler FM,Fersht AR,Joerger AC,Spencer J

    更新日期:2016-08-19 00:00:00

  • Identification of C-β-d-Glucopyranosyl Azole-Type Inhibitors of Glycogen Phosphorylase That Reduce Glycogenolysis in Hepatocytes: In Silico Design, Synthesis, in Vitro Kinetics, and ex Vivo Studies.

    abstract::Several C-β-d-glucopyranosyl azoles have recently been uncovered as among the most potent glycogen phosphorylase (GP) catalytic site inhibitors discovered to date. Toward further exploring their translational potential, ex vivo experiments have been performed for their effectiveness in reduction of glycogenolysis in h...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00172

    authors: Barr D,Szennyes E,Bokor É,Al-Oanzi ZH,Moffatt C,Kun S,Docsa T,Sipos Á,Davies MP,Mathomes RT,Snape TJ,Agius L,Somsák L,Hayes JM

    更新日期:2019-07-19 00:00:00

  • Chemical Tools for Selective Activity Profiling of Endogenously Expressed MMP-14 in Multicellular Models.

    abstract::Matrix metalloproteases (MMPs) are a large family of zinc-dependent endopeptidases involved in a diverse set of physiological and pathological processes, most notably in cancer. Current methods for imaging and quantifying MMP activity lack sufficient selectivity and spatiotemporal resolution to allow studies of specif...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00562

    authors: Amara N,Tholen M,Bogyo M

    更新日期:2018-09-21 00:00:00

  • The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins.

    abstract::Combinatorial libraries built with severely restricted chemical diversity have yielded highly functional synthetic binding proteins. Structural analyses of these minimalist binding sites have revealed the dominant role of large tyrosine residues for mediating molecular contacts and of small serine/glycine residues for...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb800314v

    authors: Koide S,Sidhu SS

    更新日期:2009-05-15 00:00:00

  • Modular strategy for the semisynthesis of a K+ channel: investigating interactions of the pore helix.

    abstract::Chemical synthesis is a powerful method for precise modification of the structural and electronic properties of proteins. The difficulties in the synthesis and purification of peptides containing transmembrane segments have presented obstacles to the chemical synthesis of integral membrane proteins. Here, we present a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb900210r

    authors: Komarov AG,Linn KM,Devereaux JJ,Valiyaveetil FI

    更新日期:2009-12-18 00:00:00

  • The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins.

    abstract::Histo-blood group epitopes are fucosylated branched oligosaccharides with well-defined conformations in solution that are recognized by receptors, such as lectins from pathogens. We report here the results of a series of experimental and computational endeavors revealing the unusual distortion of histo-blood group ant...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00333

    authors: Topin J,Lelimousin M,Arnaud J,Audfray A,Pérez S,Varrot A,Imberty A

    更新日期:2016-07-15 00:00:00