Abstract:
:Chemical genetics is a powerful approach for identifying therapeutically active small molecules, but identifying the mechanisms of action underlying hit compounds remains challenging. Chemoproteomic platforms have arisen to tackle this challenge and enable rapid mechanistic deconvolution of small-molecule screening hits. Here, we have screened a cysteine-reactive covalent ligand library to identify hit compounds that impair cell survival and proliferation in nonsmall cell lung carcinoma cells, but not in primary human bronchial epithelial cells. Through this screen, we identified a covalent ligand hit, DKM 3-42, which impaired both in situ and in vivo lung cancer pathogenicity. We used activity-based protein profiling to discover that the primary target of DKM 3-42 was the catalytic cysteine in aldehyde dehydrogenase 3A1 (ALDH3A1). We performed further chemoproteomics-enabled covalent ligand screening directly against ALDH3A1, and identified a more potent and selective lead covalent ligand, EN40, which inhibits ALDH3A1 activity and impairs lung cancer pathogenicity. We show here that ALDH3A1 represents a potentially novel therapeutic target for lung cancers that express ALDH3A1 and put forth two selective ALDH3A1 inhibitors. Overall, we show the utility of combining chemical genetics screening of covalent ligand libraries with chemoproteomic approaches to rapidly identify anticancer leads and targets.
journal_name
ACS Chem Bioljournal_title
ACS chemical biologyauthors
Counihan JL,Wiggenhorn AL,Anderson KE,Nomura DKdoi
10.1021/acschembio.8b00381subject
Has Abstractpub_date
2018-08-17 00:00:00pages
1970-1977issue
8eissn
1554-8929issn
1554-8937journal_volume
13pub_type
杂志文章abstract::Establishing the relative configuration of a bioactive natural product represents the most challenging part in determining its structure. Residual dipolar couplings (RDCs) are sensitive probes of the relative spatial orientation of internuclear vectors. We adapted a force field structure calculation methodology to all...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.7b00281
更新日期:2017-08-18 00:00:00
abstract::The heterologous biosynthesis of complex natural products has enabled access to polyketide, nonribosomal peptide, isoprenoid, and other compounds with wide-spanning societal value. Though several surrogate host systems exist, Escherichia coli is often a preferred choice due to its rapid growth kinetics and extensive m...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.9b00827
更新日期:2020-05-15 00:00:00
abstract::The number of bacterial strains that are resistant against antibiotics increased dramatically during the past decades. This fact stresses the urgent need for the development of new antibacterial agents with novel modes of action targeting essential enzymes such as RNA polymerase (RNAP). Bacterial RNAP is a large multi...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb3005758
更新日期:2013-04-19 00:00:00
abstract::Access to well-defined ubiquitin conjugates has been key to elucidating the biochemical functions of proteins in the ubiquitin signaling network. Yet, we have a poor understanding of how deubiquitinases and ubiquitin-binding proteins respond to ubiquitin modifications when anchored to a protein other than ubiquitin or...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.8b00759
更新日期:2018-09-21 00:00:00
abstract::Although protein kinase inhibitors present excellent pharmaceutical opportunities, lack of selectivity and associated therapeutic side effects are common. Bisubstrate-based inhibitors targeting both the high-selectivity peptide substrate binding groove and the high-affinity ATP pocket address this. However, they are t...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb300709g
更新日期:2013-07-19 00:00:00
abstract::Vitamin A serves essential functions in mammalian biology as a signaling molecule and chromophore. This lipid can be synthesized from more than 50 putative dietary provitamin A precursor molecules which contain at least one unsubstituted β-ionone ring. We here scrutinized the enzymatic properties and substrate specifi...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.8b00290
更新日期:2018-08-17 00:00:00
abstract::Histo-blood group epitopes are fucosylated branched oligosaccharides with well-defined conformations in solution that are recognized by receptors, such as lectins from pathogens. We report here the results of a series of experimental and computational endeavors revealing the unusual distortion of histo-blood group ant...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.6b00333
更新日期:2016-07-15 00:00:00
abstract::The β-hydroxylation of l-histidine is the first step in the biosynthesis of the imidazolone base of the antifungal drug nikkomycin. The cytochrome P450 (NikQ) hydroxylates the amino acid while it is appended via a phosphopantetheine linker to the non-ribosomal peptide synthetase (NRPS) NikP1. The latter enzyme is comp...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.7b00081
更新日期:2017-05-19 00:00:00
abstract::Reactive oxygen species (ROS) play an important role in the onset of Parkinson's disease (PD), and deciphering protective mechanisms is a major goal for therapeutic development. Here, DJ-1 (PARK7) gained major attention when a conserved cysteine residue with a putative role in oxidative stress sensing/protection was l...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.8b00633
更新日期:2018-08-17 00:00:00
abstract::Stapled peptides have great potential as modulators of protein-protein interactions (PPIs). However, there is a vast landscape of chemical features that can be varied for any given peptide, and identifying a set of features that maximizes cellular uptake and subsequent target engagement remains a key challenge. Herein...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.9b00063
更新日期:2019-03-15 00:00:00
abstract::Combination therapies that enhance efficacy or permit reduced dosages to be administered have seen great success in a variety of therapeutic applications. More fundamentally, the discovery of epistatic pathway interactions not only informs pharmacologic intervention but can be used to better understand the underlying ...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb2003225
更新日期:2011-12-16 00:00:00
abstract::Replacing the two Mn(2+) ions normally present in human Arginase I with Co(2+) resulted in a significantly lowered K(M) value without a concomitant reduction in k(cat). In addition, the pH dependence of the reaction was shifted from a pK(a) of 8.5 to a pK(a) of 7.5. The combination of these effects led to a 10-fold in...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb900267j
更新日期:2010-03-19 00:00:00
abstract::Phenotypic screening of compound libraries is a significant trend in drug discovery, yet success can be hindered by difficulties in identifying the underlying cellular targets. Current approaches rely on tethering bioactive compounds to a capture tag or surface to allow selective enrichment of interacting proteins for...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.5b00351
更新日期:2015-10-16 00:00:00
abstract::Next-generation DNA sequencing technologies have led to a massive accumulation of genomic and transcriptomic data from patients and healthy individuals. The major challenge ahead is to understand the functional significance of the elements of the human genome and transcriptome, and implications for diagnosis and treat...
journal_title:ACS chemical biology
pub_type: 杂志文章,评审
doi:10.1021/acschembio.7b00657
更新日期:2018-02-16 00:00:00
abstract::Virus entry depends on biomolecular recognition at the surface of cell membranes. In the case of glycolipid receptors, these events are expected to be influenced by how the glycan epitope close to the membrane is presented to the virus. This presentation of membrane-associated glycans is more restricted than that of g...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.7b00152
更新日期:2017-05-19 00:00:00
abstract::Small molecules are widely used in chemical biology without complete knowledge of their target profile, at risk of deriving conclusions that ignore potential confounding effects from unknown off-target interactions. The prediction and further experimental confirmation of novel affinities for PJ34 on Pim1 (IC(50) = 3.7...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb300317y
更新日期:2012-12-21 00:00:00
abstract::The steady increase in the prevalence of multidrug-resistant Staphylococcus aureus has made the search for novel antibiotics to combat this clinically important pathogen an urgent matter. In an effort to discover antibacterials with new chemical structures and mechanisms, we performed a growth inhibition screen of a s...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.9b00982
更新日期:2020-07-17 00:00:00
abstract::The development of HIV-1 protease inhibitors has been the historic paradigm of rational structure-based drug design, where structural and thermodynamic analyses have assisted in the discovery of novel inhibitors. While the total enthalpy and entropy change upon binding determine the affinity, often the thermodynamics ...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb300191k
更新日期:2012-09-21 00:00:00
abstract::Miniproteins have a size between that of larger biologics and small molecules and presumably possess the advantages of both; they represent an expanding class of promising scaffolds for the design of affinity reagents, enzymes, and therapeutics. Conventional strategies to promote cellular uptake of miniproteins rely o...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.8b00564
更新日期:2018-11-16 00:00:00
abstract::The arabinosyltransferases responsible for the biosynthesis of the arabinan domains of two abundant heteropolysaccharides of the cell envelope of all mycobacterial species, lipoarabinomannan and arabinogalactan, are validated drug targets. Using a cell envelope preparation from Mycobacterium smegmatis as the enzyme so...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.6b00093
更新日期:2016-06-17 00:00:00
abstract::Polyalkoxybenzenes are plant components displaying a wide range of biological activities. In these studies, we synthesized apiol and dillapiol isoxazoline analogues of combretastatins and evaluated their effect on sea urchin embryos. We have shown that p-methoxyphenyl isoxazoline caused sea urchin embryo immobilizatio...
journal_title:ACS chemical biology
pub_type: 信件
doi:10.1021/cb700163q
更新日期:2008-02-15 00:00:00
abstract::A complication of diabetes is the inability of wounds to heal in diabetic patients. Diabetic wounds are refractory to healing due to the involvement of activated matrix metalloproteinases (MMPs), which remodel the tissue resulting in apoptosis. There are no readily available methods that identify active unregulated MM...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb4005468
更新日期:2014-01-17 00:00:00
abstract::APOBEC3G is a single-stranded DNA cytosine deaminase that comprises part of the innate immune response to viruses and transposons. Although APOBEC3G is the prototype for understanding the larger mammalian polynucleotide deaminase family, no specific chemical inhibitors exist to modulate its activity. High-throughput s...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb200440y
更新日期:2012-03-16 00:00:00
abstract::Autophagy is a bulk, nonspecific protein degradation pathway that is involved in the pathogenesis of cancer and neurodegenerative disease. Here, we observed that xanthohumol (XN), a prenylated chalcone present in hops (Humulus lupulus L.) and beer, modulates autophagy. By using XN-immobilized beads, valosin-containing...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb200492h
更新日期:2012-05-18 00:00:00
abstract::Dihydrofolate reductase (DHFR) is a potential drug target for Trypanosoma brucei, a human parasite, which is the causative agent for African sleeping sickness. No drug is available against this target, since none of the classical antifolates such as pyrimethamine (PYR), cycloguanil, or trimethoprim are effective as se...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb200124r
更新日期:2011-09-16 00:00:00
abstract::It has been known for nearly a half century that human tumors, including those derived from the nervous system such as glioblastomas, medulloblastoma, and neuroblastomas are much more sensitive than normal tissues to l-methionine (l-Met) starvation. More recently, systemic l-Met depletion by administration of Pseudomo...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb300335j
更新日期:2012-11-16 00:00:00
abstract::The ATP site of kinases displays remarkable conformational flexibility when accommodating chemically diverse small molecule inhibitors. The so-called activation segment, whose conformation controls catalytic activity and access to the substrate binding pocket, can undergo a large conformational change with the active ...
journal_title:ACS chemical biology
pub_type: 杂志文章,评审
doi:10.1021/cb500129t
更新日期:2014-06-20 00:00:00
abstract::Base deamination is a common type of DNA damage that occurs in all organisms. DNA repair mechanisms are critical to maintain genome integrity, in which the base excision repair pathway plays an essential role. In the BER pathway, the uracil DNA glycosylase superfamily is responsible for removing the deaminated bases f...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.6b00164
更新日期:2016-06-17 00:00:00
abstract::Developing computational tools for a chassis-centered biosynthetic pathway design is very important for a productive heterologous biosynthesis system by considering enormous foreign biosynthetic reactions. For many cases, a pathway to produce a target molecule consists of both native and heterologous reactions when ut...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/acschembio.7b00605
更新日期:2017-11-17 00:00:00
abstract::Angiogenesis, the formation of new blood vessels, is implicated in a number of important human diseases, including cancer, diabetic retinopathy, and rheumatoid arthritis. To identify clinically useful angiogenesis inhibitors, we assembled and screened a library of mostly Food and Drug Administration-approved drugs for...
journal_title:ACS chemical biology
pub_type: 杂志文章
doi:10.1021/cb600362d
更新日期:2007-04-24 00:00:00