Abstract:
BACKGROUND:New sequencing techniques require new visualization strategies, as is the case for epigenomics data such as DNA base modifications, small non-coding RNAs, and histone modifications. RESULTS:We present a set of plugins for the genome browser JBrowse that are targeted for epigenomics visualizations. Specifically, we have focused on visualizing DNA base modifications, small non-coding RNAs, stranded read coverage, and sequence motif density. Additionally, we present several plugins for improved user experience such as configurable, high-quality screenshots. CONCLUSIONS:In visualizing epigenomics with traditional genomics data, we see these plugins improving scientific communication and leading to discoveries within the field of epigenomics.
journal_name
BMC Bioinformaticsjournal_title
BMC bioinformaticsauthors
Hofmeister BT,Schmitz RJdoi
10.1186/s12859-018-2160-zsubject
Has Abstractpub_date
2018-04-25 00:00:00pages
159issue
1issn
1471-2105pii
10.1186/s12859-018-2160-zjournal_volume
19pub_type
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