Mapping the microRNA Expression Profiles in Glyoxalase Over-expressing Salinity Tolerant Rice.

Abstract:

:In the recent years, glyoxalase pathway has been an active area of research in both human and plants. This pathway is reported to confer stress tolerance in plants, by modulating the glutathione homeostasis to achieve detoxification of a potent cytotoxic and mutagenic compound, methylglyoxal. The microRNAs (miRNAs) are also reported to play significant role in stress tolerance for plants. However, the cross-talk of miRNAs with the metabolism regulated by glyoxalase in the salinity-tolerance is unexplored. We therefore investigated whether expression profiles of miRNAs are altered in response to glyoxalase overexpression, and if any of these are also responsible for modulating the stress responses of plants. In this study, the Next Generation Sequencing (NGS) was employed to profile miRNA expression levels from glyoxalase overexpressing transgenic lines. The associated targets of differentially expressed miRNAs were predicted and their functional annotation was carried out using Gene Ontology (GO) and KEGG Orthology (KO), which showed their involvement in several crucial biological pathways. The analysis of NGS datasets also identified other isoforms or isomiRs of selected miRNAs, which may have an active role in developing tolerance against salt stress. Different aspects of miRNA modifications were also studied in glyoxalase overexpressing lines.

journal_name

Curr Genomics

journal_title

Current genomics

authors

Tripathi A,Chacon O,Singla-Pareek SL,Sopory SK,Sanan-Mishra N

doi

10.2174/1389202918666170228134530

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

21-35

issue

1

eissn

1389-2029

issn

1875-5488

pii

CG-19-21

journal_volume

19

pub_type

杂志文章
  • Antigenic Differences Between Normal and Malignant Cells as a Basis for Treatment of Intracerebral Neoplasms Using a DNA-Based Vaccine.

    abstract::Antigenic differences between normal and malignant cells of the cancer patient form the rationale for clinical immunotherapeutic strategies. Because the antigenic phenotype of neoplastic cells varies widely among different cells within the same malignant cell-population, immunization with a vaccine that stimulates imm...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920206778426951

    authors: Lichtor T,Glick RP,O-Sullivan I,Cohen EP

    更新日期:2006-06-01 00:00:00

  • MicroRNAs in Lung Cancer Oncogenesis and Tumor Suppression: How it Can Improve the Clinical Practice?

    abstract:Background:Lung cancer (LC) development is a process that depends on genetic mutations. The DNA methylation, an important epigenetic modification, is associated with the expression of non-coding RNAs, such as microRNAs. MicroRNAs are particularly essential for cell physiology, since they play a critical role in tumor s...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202921999200630144712

    authors: Pozza DH,De Mello RA,Araujo RLC,Velcheti V

    更新日期:2020-08-01 00:00:00

  • Vegetable Oil: Nutritional and Industrial Perspective.

    abstract::Oils of plant origin have been predominantly used for food-based applications. Plant oils not only represent a non-polluting renewable resource but also provide a wide diversity in fatty acids (FAs) composition with diverse applications. Besides being edible, they are now increasingly being used in industrial applicat...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202917666160202220107

    authors: Kumar A,Sharma A,Upadhyaya KC

    更新日期:2016-06-01 00:00:00

  • A graphical weighted power improving multiplicity correction approach for SNP selections.

    abstract::Controlling for the multiplicity effect is an essential part of determining statistical significance in large-scale single-locus association genome scans on Single Nucleotide Polymorphisms (SNPs). Bonferroni adjustment is a commonly used approach due to its simplicity, but is conservative and has low power for large-s...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920291505141106103959

    authors: Saunders G,Fu G,Stevens JR

    更新日期:2014-10-01 00:00:00

  • Microarray-based gene expression analysis of hepatocellular carcinoma.

    abstract::Microarray studies have successfully shed light on various aspects of the molecular mechanisms behind the development of hepatocellular carcinoma (HCC), such as the identification of novel molecular subgroups and the genetic profiles associated with metastasis and venous invasion. These experiments, mainly comprising ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920210791233063

    authors: Maass T,Sfakianakis I,Staib F,Krupp M,Galle PR,Teufel A

    更新日期:2010-06-01 00:00:00

  • Estrogen Regulation of MicroRNA Expression.

    abstract::Women outlive men, but life expectancy is not influenced by hormone replacement (estrogen + progestin) therapy. Estrogens appear to protect brain, cardiovascular tissues, and bone from aging. Estrogens regulate genes directly through binding to estrogen receptors alpha and beta (ERalpha and ERbeta) that are ligand-act...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920209788185289

    authors: Klinge CM

    更新日期:2009-05-01 00:00:00

  • Post-translational Modifications are Required for Circadian Clock Regulation in Vertebrates.

    abstract::Circadian clocks are intrinsic, time-tracking systems that bestow upon organisms a survival advantage. Under natural conditions, organisms are trained to follow a 24-h cycle under environmental time cues such as light to maximize their physiological efficiency. The exact timing of this rhythm is established via cell-a...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202919666191014094349

    authors: Okamoto-Uchida Y,Izawa J,Nishimura A,Hattori A,Suzuki N,Hirayama J

    更新日期:2019-08-01 00:00:00

  • Do mtDNA Mutations Participate in the Pathogenesis of Sporadic Parkinson's Disease?

    abstract::The pathogenesis of sporadic Parkinson's disease (PD) remains enigmatic. Mitochondrial complex-I defects are known to occur in the substantia nigra (SN) of PD patients and are also debated in some extracerebral tissues. Early sequencing efforts of the mitochondrial DNA (mtDNA) did not reveal specific mutations, but a ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920209789503879

    authors: Kirches E

    更新日期:2009-12-01 00:00:00

  • Crosstalk Between DNA and Histones: Tet's New Role in Embryonic Stem Cells.

    abstract::Embryonic stem (ES) cells are characterized by the expression of an extensive and interconnected network of pluripotency factors which are downregulated in specialized cells. Epigenetic mechanisms, including DNA methylation and histone modifications, are also important in maintaining this pluripotency program in ES ce...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920212803759730

    authors: Sui X,Price C,Li Z,Chen J

    更新日期:2012-12-01 00:00:00

  • WITMSG: Large-scale Prediction of Human Intronic m6A RNA Methylation Sites from Sequence and Genomic Features.

    abstract:Introduction:N6-methyladenosine (m6A) is one of the most widely studied epigenetic modifications. It plays important roles in various biological processes, such as splicing, RNA localization and degradation, many of which are related to the functions of introns. Although a number of computational approaches have been p...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202921666200211104140

    authors: Liu L,Lei X,Meng J,Wei Z

    更新日期:2020-01-01 00:00:00

  • Repurposing Pathogenic Variants of DMD Gene and its Isoforms for DMD Exon Skipping Intervention.

    abstract:Background:Duchenne Muscular Dystrophy (DMD) is a progressive, fatal neuromuscular disorder caused by mutations in the DMD gene. Emerging antisense oligomer based exon skipping therapy provides hope for the restoration of the reading frame. Objectives:Population-based DMD mutation database may enable exon skipping to ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202920666191107142754

    authors: Tyagi R,Kumar S,Dalal A,Mohammed F,Mohanty M,Kaur P,Anand A

    更新日期:2019-11-01 00:00:00

  • EGFR Intron Recombination in Human Gliomas: Inappropriate Diversion of V(D)J Recombination?

    abstract::The epidermal growth factor receptor (EGFR) is a membrane-bound, 170 kDa, protein tyrosine kinase that plays an important role in tumorigenesis. The EGFR gene, which is composed of over 168 kb of sequence, including a 123-kb first intron, is frequently amplified and rearranged in malignant gliomas leading to the expre...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920207780833838

    authors: Fenstermaker RA,Ciesielski MJ

    更新日期:2007-05-01 00:00:00

  • The Genetics of Papillary Microcarcinomas of the Thyroid: Diagnostic and Prognostic Implications.

    abstract::Papillary microcarcinoma of the thyroid (mPTC) is defined by the WHO as a papillary thy-roid cancer measuring 10mm or less in diameter and it is nowadays a topic of intense debate among the members of the medical community due to its apparent "epidemic" rise. Although these tumors follow almost always an indolent clin...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202918666170105094459

    authors: Rodrigues AC,Penna G,Rodrigues E,Castro P,Sobrinho-Simões M,Soares P

    更新日期:2017-06-01 00:00:00

  • Overview of Genomic Tools for Circular Visualization in the Next-generation Genomic Sequencing Era.

    abstract::After human genome sequencing and rapid changes in genome sequencing methods, we have entered into the era of rapidly accumulating genome-sequencing data. This has derived the development of several types of methods for representing results of genome sequencing data. Circular genome visual-ization tools are also criti...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202920666190314092044

    authors: Parveen A,Khurana S,Kumar A

    更新日期:2019-02-01 00:00:00

  • Genetic alterations in poorly differentiated and undifferentiated thyroid carcinomas.

    abstract::Thyroid gland presents a wide spectrum of tumours derived from follicular cells that range from well differentiated, papillary and follicular carcinoma (PTC and FTC, respectively), usually carrying a good prognosis, to the clinically aggressive, poorly differentiated (PDTC) and undifferentiated thyroid carcinoma (UTC)...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920211798120853

    authors: Soares P,Lima J,Preto A,Castro P,Vinagre J,Celestino R,Couto JP,Prazeres H,Eloy C,Máximo V,Sobrinho-Simões M

    更新日期:2011-12-01 00:00:00

  • Exploitation of Potential Extremophiles for Bioremediation of Xenobiotics Compounds: A Biotechnological Approach.

    abstract::Microorganisms that are capable of live and adapt in hostile habitats of different environmental factors such as extremes temperature, salinity, nutrient availability and pressure are known as extremophiles. Exposure to xenobiotic compounds is global concern influencing the world population as a health hazard. Hence t...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202921999200422122253

    authors: Shukla AK,Singh AK

    更新日期:2020-04-01 00:00:00

  • Preterm Birth and the Risk of Neurodevelopmental Disorders - Is There a Role for Epigenetic Dysregulation?

    abstract::Preterm Birth (PTB) accounts for approximately 11% of all births worldwide each year and is a profound physiological stressor in early life. The burden of neuropsychiatric and developmental impairment is high, with severity and prevalence correlated with gestational age at delivery. PTB is a major risk factor for the ...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202919666171229144807

    authors: Fitzgerald E,Boardman JP,Drake AJ

    更新日期:2018-11-01 00:00:00

  • MicroRNA and Cancer: Tiny Molecules with Major Implications.

    abstract::Cancer is currently a major public health problem and, as such, emerging research is making significant progress in identifying major players in its biology. One recent topic of interest involves microRNAs (miRNAs) which are small, non-coding RNA molecules that inhibit gene expression post-transcriptionally. They acco...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920208784139555

    authors: Vandenboom Ii TG,Li Y,Philip PA,Sarkar FH

    更新日期:2008-04-01 00:00:00

  • CENPA a genomic marker for centromere activity and human diseases.

    abstract::Inheritance of genetic material requires that chromosomes segregate faithfully during cell division. Failure in this process can drive to aneuploidy phenomenon. Kinetochores are unique centromere macromolecular protein structures that attach chromosomes to the spindle for a proper movement and segregation. A unique ty...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/138920209788920985

    authors: Valdivia MM,Hamdouch K,Ortiz M,Astola A

    更新日期:2009-08-01 00:00:00

  • Prostate Cancer Gene Regulatory Network Inferred from RNA-Seq Data.

    abstract:Background:Cancer is a complex disease with a lucid etiology and in understanding the causation, we need to appreciate this complexity. Objective:Here we are aiming to gain insights into the genetic associations of prostate cancer through a network-based systems approach using the BC3Net algorithm. Methods:Specifical...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202919666181107122005

    authors: Moore D,Simoes RM,Dehmer M,Emmert-Streib F

    更新日期:2019-01-01 00:00:00

  • Recent Advances in Understanding the Molecular Mechanisms Regulating the Root System Response to Phosphate Deficiency in Arabidopsis.

    abstract::Phosphorus (P) is an essential macronutrient for plant growth and development. Inorganic phosphate (Pi) is the major form of P taken up from the soil by plant roots. It is well established that under Pi deficiency condition, plant roots undergo striking morphological changes; mainly a reduction in primary root length ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202917666160331201812

    authors: Bouain N,Doumas P,Rouached H

    更新日期:2016-08-01 00:00:00

  • Analytical Models For Genetics of Human Traits Influenced By Sex.

    abstract::Analytical models usually assume an additive sex effect by treating it as a covariate to identify genetic associations with sex-influenced traits. Their underlying assumptions are violated by ignoring interactions of sex with genetic factors and heterogeneous genetic effects by sex. Methods to deal with the problems a...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202917666160420142601

    authors: Lee C

    更新日期:2015-10-01 00:00:00

  • Genome-wide Scanning and Characterization of Sorghum bicolor L. Heat Shock Transcription Factors.

    abstract::A genome-wide scanning of Sorghum bicolor resulted in the identification of 25 SbHsf genes. Phylogenetic analysis shows the ortholog genes that are clustered with only rice, representing a common ancestor. Promoter analysis revealed the identification of different cis-acting elements that are responsible for abiotic a...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202916666150313230812

    authors: Nagaraju M,Reddy PS,Kumar SA,Srivastava RK,Kishor PB,Rao DM

    更新日期:2015-08-01 00:00:00

  • Reverse Engineering of Genome-wide Gene Regulatory Networks from Gene Expression Data.

    abstract::Transcriptional regulation plays vital roles in many fundamental biological processes. Reverse engineering of genome-wide regulatory networks from high-throughput transcriptomic data provides a promising way to characterize the global scenario of regulatory relationships between regulators and their targets. In this r...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202915666141110210634

    authors: Liu ZP

    更新日期:2015-02-01 00:00:00

  • The Relation Between Promoter Chromatin Status, Xyr1 and Cellulase Ex-pression in Trichoderma reesei.

    abstract::The ascomycete Trichoderma reesei is used for the production of plant cell wall-degrading enzymes in industrial scale. The interplay of the transactivator Xyr1 and the repressor Cre1 mainly regulates the expression of these enzymes. During induc-ing conditions, such as in the presence of sophorose, the transcription o...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202917666151116211812

    authors: Mello-de-Sousa TM,Rassinger A,Derntl C,Poças-Fonseca MJ,Mach RL,Mach-Aigner AR

    更新日期:2016-04-01 00:00:00

  • A Systematic In-silico Analysis of Helicobacter pylori Pathogenic Islands for Identification of Novel Drug Target Candidates.

    abstract:BACKGROUND:Helicobacter pylori is associated with inflammation of different areas, such as the duodenum and stomach, causing gastritis and gastric ulcers leading to lymphoma and cancer. Pathogenic islands are a type of clustered mobile elements ranging from 10-200 Kb contributing to the virulence of the respective path...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202918666170705160615

    authors: Nammi D,Yarla NS,Chubarev VN,Tarasov VV,Barreto GE,Pasupulati AMC,Aliev G,Neelapu NRR

    更新日期:2017-10-01 00:00:00

  • Retromer Dysfunction and Neurodegenerative Disease.

    abstract::In recent years, genomic, animal and cell biology studies have implicated deficiencies in retromer-mediated trafficking of proteins in an increasing number of neurodegenerative diseases including Alzheimer's Disease (AD), Parkinson's Disease (PD) and Frontotemporal Lobar Degener-ation (FTLD). The retromer complex, whi...

    journal_title:Current genomics

    pub_type: 杂志文章,评审

    doi:10.2174/1389202919666171024122809

    authors: Reitz C

    更新日期:2018-05-01 00:00:00

  • Computational approaches in detecting non- coding RNA.

    abstract::The important role of non coding RNAs (ncRNAs) in the cell has made their identification a critical issue in the biological research. However, traditional approaches such as PT-PCR and Northern Blot are costly. With recent progress in bioinformatics and computational prediction technology, the discovery of ncRNAs has ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/13892029113149990005

    authors: Wang C,Wei L,Guo M,Zou Q

    更新日期:2013-09-01 00:00:00

  • Integrated analysis of transcriptomic and proteomic data.

    abstract::Until recently, understanding the regulatory behavior of cells has been pursued through independent analysis of the transcriptome or the proteome. Based on the central dogma, it was generally assumed that there exist a direct correspondence between mRNA transcripts and generated protein expressions. However, recent st...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202911314020003

    authors: Haider S,Pal R

    更新日期:2013-04-01 00:00:00

  • Detecting the Genomic Signature of Divergent Selection in Presence of Gene Flow.

    abstract::The study of local adaptation is a main focus of evolutionary biology since it may contribute to explain the current species diversity. The genomic scan procedures permit for the first time to study the connection between specific DNA patterns and processes as natural selection, genetic drift, recombination, mutation ...

    journal_title:Current genomics

    pub_type: 杂志文章

    doi:10.2174/1389202916666150313230943

    authors: Rivas MJ,Domínguez-García S,Carvajal-Rodríguez A

    更新日期:2015-06-01 00:00:00