Transcriptomic profiling of developing fiber in levant cotton (Gossypium herbaceum L.).

abstract：:MicroRNAs (miRNAs) play a pivotal role in post-transcriptional regulation of gene expression in plants. In this study, we investigate miRNAs in an agronomically important common tobacco in China, named Honghua Dajinyuan (a drought-tolerant cultivar). Here, we report a comprehensive analysis of miRNA expression profile...

journal_title：Functional & integrative genomics

authors： Yin F,Gao J,Liu M,Qin C,Zhang W,Yang A,Xia M,Zhang Z,Shen Y,Lin H,Luo C,Pan G

更新日期：2014-06-01 00:00:00

abstract：:Stem blister canker, caused by Botryosphaeria dothidea, is becoming the most serious disease of poplar in China. The molecular basis of the poplar in response to stem blister canker is not well understood. To reveal the global transcriptional changes of poplar to infection by B. dothidea, Solexa paired-end sequencing ...

journal_title：Functional & integrative genomics

authors： Liao W,Ji L,Wang J,Chen Z,Ye M,Ma H,An X

更新日期：2014-09-01 00:00:00

abstract：:Intronless genes, a characteristic feature of prokaryotes, constitute a significant portion of the eukaryotic genomes. Our analysis revealed the presence of 11,109 (19.9%) and 5,846 (21.7%) intronless genes in rice and Arabidopsis genomes, respectively, belonging to different cellular role and gene ontology categories...

journal_title：Functional & integrative genomics

authors： Jain M,Khurana P,Tyagi AK,Khurana JP

更新日期：2008-02-01 00:00:00

abstract：:Seasonal estrus is a key factor limiting animal fertility, and understanding the molecular mechanisms that regulate animal estrus is important for improving animal fertility. The pituitary gland, which is the most important endocrine gland in mammals, plays an important role in regulating the physiological processes s...

journal_title：Functional & integrative genomics

authors： Li X,Li C,Xu Y,Yao R,Li H,Ni W,Quan R,Zhang M,Liu L,Yu S,Ullah Y,Hu R,Li Y,Guo T,Wang X,Hu S

更新日期：2020-07-01 00:00:00

abstract：:Culex pipiens mosquitoes are important disease vectors inhabiting temperate zones, worldwide. The seasonal reduction in temperature and photoperiod accompanying late summer and early fall prompts female mosquitoes to enter diapause, a stage of developmental arrest and physiological conditioning that enhances survival ...

journal_title：Functional & integrative genomics

authors： Hickner PV,Mori A,Zeng E,Tan JC,Severson DW

更新日期：2015-07-01 00:00:00

abstract：:Although the economic value of wheat flour is determined by the complement of gluten proteins, these proteins have been challenging to study because of the complexity of the major protein groups and the tremendous sequence diversity among wheat cultivars. The completion of a high-quality wheat genome sequence from the...

journal_title：Functional & integrative genomics

authors： Altenbach SB,Chang HC,Simon-Buss A,Mohr T,Huo N,Gu YQ

更新日期：2020-01-01 00:00:00

abstract：:As the amino acid storing organelle, the protein bodies provide nutrients for embryo development, seed germination and early seedling growth through storage proteolysis in cereal plants, such as wheat and rice. In protein bodies, the monomeric and polymeric prolamins, i.e. gliadins and glutenins, form gluten and play ...

journal_title：Functional & integrative genomics

authors： She M,Ye X,Yan Y,Howit C,Belgard M,Ma W

更新日期：2011-03-01 00:00:00

abstract：:In silico analysis together with cloning, molecular characterization and heterologous expression reports that the hypothetical protein All5371 of Anabaena sp. PCC7120 is a novel hydroperoxide scavenging protein similar to AhpD of bacteria. The presence of E(X)11CX HC(X)3H motif in All5371 confers peroxidase activity a...

journal_title：Functional & integrative genomics

authors： Shrivastava AK,Singh S,Singh PK,Pandey S,Rai LC

更新日期：2015-01-01 00:00:00

abstract：:The response of a grass halophyte Spartina alterniflora at early stages of salt stress was investigated through generation and systematic analysis of expressed sequence tags (ESTs) from both leaf and root tissues. Random EST sequencing produced 1,227 quality ESTs, which were clustered into 127 contigs, and 368 were si...

journal_title：Functional & integrative genomics

authors： Baisakh N,Subudhi PK,Varadwaj P

更新日期：2008-08-01 00:00:00

abstract：:MicroRNAs (miRNAs) are small RNAs (sRNAs) that regulate gene expression in development and adaptive responses to the environment. The early days in the sRNA field was one of the most exciting and promising moments in modern biology, attracting large investments to the understanding of the underlining mechanisms and th...

journal_title：Functional & integrative genomics

authors： Reis RS

更新日期：2017-05-01 00:00:00

abstract：:MicroRNAs, small regulatory molecules with significant impacts on the transcriptional network of all living organisms, have been the focus of several studies conducted mostly on modern wheat cultivars. In this study, we investigated miRNA repertoires of modern durum wheat and its wild relatives, with differing degrees...

journal_title：Functional & integrative genomics

authors： Akpinar BA,Kantar M,Budak H

更新日期：2015-09-01 00:00:00

abstract：:The root-knot nematode Meloidogyne incognita is among the most damaging plant-parasitic pests of several crops including cotton (Gossypium hirsutum) and tomato (Lycopersicon escultentum). Recently, a genome has become available for M. incognita, which greatly facilitates investigation of the interactions between M. in...

journal_title：Functional & integrative genomics

authors： Zhang Y,Wang Y,Xie F,Li C,Zhang B,Nichols RL,Pan X

更新日期：2016-03-01 00:00:00

abstract：:Advances in our understanding of genome structure provide consistent evidence for the existence of a core genome representing species classically defined by phenotype, as well as conditionally dispensable components of the genome that shows extensive variation between individuals of a given species. Generally, conserv...

journal_title：Functional & integrative genomics

authors： Appels R,Barrero R,Bellgard M

更新日期：2013-03-01 00:00:00

abstract：:Aldo/keto reductases (AKRs) constitute a multitasking protein family that catalyzes diverse metabolic transformations including detoxification of stress generated reactive aldehydes. Yet this important protein family is poorly understood particularly in cyanobacteria, the ecologically most diverse and significant grou...

journal_title：Functional & integrative genomics

authors： Agrawal C,Yadav S,Rai S,Chatterjee A,Sen S,Rai R,Rai LC

更新日期：2017-07-01 00:00:00

abstract：:Jatropha curcas is a new promising bioenergy crop due to the high oil content in its seeds that can be converted into biodiesel. Seed size, a major determinant of Jatropha oil yield, is a target trait for Jatropha breeding. Due to the vital roles of phytohormone auxin in controlling seed and fruit development, we scre...

journal_title：Functional & integrative genomics

authors： Ye J,Liu P,Zhu C,Qu J,Wang X,Sun Y,Sun F,Jiang Y,Yue G,Wang C

更新日期：2014-12-01 00:00:00

abstract：:Carefully analyzed expression profiles can serve as a valuable reference for deciphering gene functions. We exploited the potential of whole genome microarrays to measure the spatial and temporal expression profiles of rice genes in 19 stages of vegetative and reproductive development. We could verify expression of 22...

journal_title：Functional & integrative genomics

authors： Sharma R,Agarwal P,Ray S,Deveshwar P,Sharma P,Sharma N,Nijhawan A,Jain M,Singh AK,Singh VP,Khurana JP,Tyagi AK,Kapoor S

更新日期：2012-06-01 00:00:00

abstract：:The oomycete pathogen Plasmopara viticola (Berk. et Curt.) Berl. et de Toni is the causing agent of the destructive downy mildew disease in grapevine. Despite the advances towards elucidation of grapevine resistance mechanisms to downy mildew, increased knowledge of the biological and genetic components of the pathosy...

journal_title：Functional & integrative genomics

authors： Figueiredo A,Monteiro F,Fortes AM,Bonow-Rex M,Zyprian E,Sousa L,Pais MS

更新日期：2012-06-01 00:00:00

abstract：:Fungal species are potential dye decomposers since these secrete spectra of extracellular enzymes involved in catabolism. However, cellular mechanisms underlying azo dye catalysis and detoxification are incompletely understood and obscure. A potential strain designated as Penicillium oxalicum SAR-3 demonstrated broad-...

journal_title：Functional & integrative genomics

authors： Saroj S,Kumar K,Prasad M,Singh RP

更新日期：2014-12-01 00:00:00

abstract：:GRAS domain genes are a group of important plant-specific transcription factors that have been reported to be involved in plant development. In order to know the roles of GRAS genes in grapevine, a widely cultivated fruit crop, the study on grapevine GRAS (VvGRAS) was carried out, and from which, 43 were identified fr...

journal_title：Functional & integrative genomics

authors： Sun X,Xie Z,Zhang C,Mu Q,Wu W,Wang B,Fang J

更新日期：2016-07-01 00:00:00

abstract：:Gastrointestinal nematodes of the genus Cooperia are arguably the most important parasites of cattle. The bovine jejunal transcriptome was characterized in response to Cooperia oncophora infection using RNA-seq technology. Approximately 71% of the 25,670 bovine genes were detected in the jejunal transcriptome. However...

journal_title：Functional & integrative genomics

authors： Li RW,Schroeder SG

更新日期：2012-03-01 00:00:00

abstract：:Winter wheat lines can achieve cold acclimation (development of tolerance to freezing temperatures) and vernalization (delay in transition from vegetative to reproductive phase) in response to low non-freezing temperatures. To describe cold-acclimation-specific processes and pathways, we utilized cold acclimation tran...

journal_title：Functional & integrative genomics

authors： Karki A,Horvath DP,Sutton F

更新日期：2013-03-01 00:00:00

abstract：:Control of proteolysis is important for plant growth, development, responses to stress, and defence against insects and pathogens. Members of the serpin protein family are likely to play a critical role in this control through irreversible inhibition of endogenous and exogenous target proteinases. Serpins have been fo...

journal_title：Functional & integrative genomics

authors： Roberts TH,Hejgaard J

更新日期：2008-02-01 00:00:00

abstract：:Medicago sativa L. (alfalfa) 'Zhaodong' is an important forage legume that can safely survive in northern China where winter temperatures reach as low as -30 °C. Survival of alfalfa following freezing stress depends on the amount and revival ability of crown buds. In order to investigate the molecular mechanisms of fr...

journal_title：Functional & integrative genomics

authors： Song L,Jiang L,Chen Y,Shu Y,Bai Y,Guo C

更新日期：2016-09-01 00:00:00

abstract：:In theory, gene therapy is a simple concept which holds great promise as a cure for disease. In practice, however, considerable obstacles have to be overcome, including problems with safe and efficient gene delivery and stable gene expression. This review gives an overview on the history of gene therapy and analyses s...

journal_title：Functional & integrative genomics

authors： Grosshans H

更新日期：2000-09-01 00:00:00

abstract：:Auxin response factors (ARFs) are recently discovered transcription factors that bind with auxin response elements (AuxRE, TGTCTC) to regulate the expression of early auxin-responsive genes. To our knowledge, the ARF gene family has never been characterized in cotton, the most important fiber crop in the world. In thi...

journal_title：Functional & integrative genomics

authors： Sun R,Wang K,Guo T,Jones DC,Cobb J,Zhang B,Wang Q

更新日期：2015-07-01 00:00:00

abstract：:A cDNA library containing approximately 5,000 clones from germinating barley embryos was constructed and used to examine the variation in gene expression patterns during the first 4 days postimbibition. The expression profiles of embryos (including scutellum) from 4 to 96 h postimbibition were compared to a reference ...

journal_title：Functional & integrative genomics

authors： Watson L,Henry RJ

更新日期：2005-07-01 00:00:00

abstract：:In the past decade, there has been an intense effort to comprehensively catalogue the expressed genes in the yeast Saccharomyces cerevisiae and to determine the absolute and relative abundance of transcript and protein levels under different cellular conditions. Several methods have been developed to monitor gene expr...

journal_title：Functional & integrative genomics

authors： Horak CE,Snyder M

更新日期：2002-09-01 00:00:00

abstract：:Campylobacter jejuni remains a major cause of human gastroenteritis with estimated annual incidence rate of 450 million infections worldwide. C. jejuni is a major burden to public health in both socioeconomically developing and industrialized nations. Virulence determinants involved in C. jejuni pathogenesis are multi...

journal_title：Functional & integrative genomics

authors： Mehla K,Ramana J

更新日期：2017-01-01 00:00:00

abstract：:Tuber mustard (Brassica juncea (L.) Czern. et Coss. var. tumida Tsen et Lee) is an important vegetable crop with a characteristic of expanded stem that is edible. The underlying molecular mechanism of the stem expansion is not well understood. Here, we reported that a total of 51 differentially expressed fragments (DE...

journal_title：Functional & integrative genomics

authors： Cao L,Liu B,Li J,Yu N,Zou X,Chen L

更新日期：2015-11-01 00:00:00

abstract：:Bread wheat (Triticum aestivum L.) is one of the most important crops globally and a high priority for genetic improvement, but its large and complex genome has been seen as intractable to whole genome sequencing. Isolation of individual wheat chromosome arms has facilitated large-scale sequence analyses. However, so ...

journal_title：Functional & integrative genomics

authors： Lucas SJ,Šimková H,Šafář J,Jurman I,Cattonaro F,Vautrin S,Bellec A,Berges H,Doležel J,Budak H

更新日期：2012-03-01 00:00:00