Taxonomic analyses of members of the Streptomyces cinnabarinus cluster, description of Streptomyces cinnabarigriseus sp. nov. and Streptomyces davaonensis sp. nov.

Abstract:

:Roseoflavin is the only known riboflavin (vitamin B2) analog with antibiotic properties. It is actively taken up by many micro-organisms and targets flavinmononucleotide riboswitches and flavoproteins. It is described as the product of the tentatively named 'Streptomyces davawensis' JCM 4913. Taxonomic analysis of this strain with a polyphasic approach showed that it is very closely related to Streptomyces cinnabarinus (DSM 40467). The two Streptomyces isolates were obtained from different geographical locations (the Philippines and the Kamchatka Peninsula, respectively), their genomes have been sequenced and the question was whether or not the two isolates were representatives of the same species. As we also worked with another isolate of Streptomyces cinnabarinus JS 360, the producer of the cinnabaramides, we wanted to clarify the taxonomic position of the three isolates by using a polyphasic approach. After analysis of the 16S rRNA gene sequence, we found in total 23 species of the genus Streptomyces that showed a similarity higher than 98.5 % to the three strains. We showed that 'S. davawensis' JCM 4913 and S. cinnabarinus DSM 40467 were very closely related but belong to two different species. Hence, we validate 'S. davawensis' as Streptomyces davaonensis sp. nov. with the type strain JCM 4913T (=DSM 101723T). In addition, the cinnabaramide producer can be clearly differentiated from S. davaonensis and this isolate is described as Streptomyces cinnabarigriseus sp. nov. with strain JS360T (=NCCB 100590T=DSM 101724T) as the type strain.

authors

Landwehr W,Kämpfer P,Glaeser SP,Rückert C,Kalinowski J,Blom J,Goesmann A,Mack M,Schumann P,Atasayar E,Hahnke RL,Rohde M,Martin K,Stadler M,Wink J

doi

10.1099/ijsem.0.002519

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

382-393

issue

1

eissn

1466-5026

issn

1466-5034

journal_volume

68

pub_type

杂志文章
  • Chryseobacterium carnipullorum sp. nov., isolated from raw chicken.

    abstract::Three Gram-staining-negative, rod-shaped, non-spore-forming, non-motile, oxidase-positive, yellow pigmented and aerobic bacterial isolates designated 8_R23573, 9_R23581(T) and 10_R23577 were isolated from raw chicken at a broiler processing plant in Bloemfontein, South Africa. A polyphasic taxonomic approach was used ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049445-0

    authors: Charimba G,Jooste P,Albertyn J,Hugo C

    更新日期:2013-09-01 00:00:00

  • Erythrobacter aquimixticola sp. nov., isolated from the junction between the ocean and a freshwater spring.

    abstract::A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated JSSK-14T, was isolated from the place where the ocean and a freshwater spring meet at Jeju island, South Korea. Strain JSSK-14T grew optimally at pH 7.0-8.0, at 30 °C and in the presence of 1.0-2.0 % (w/v) NaCl. A ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002055

    authors: Park S,Jung YT,Choi SJ,Yoon JH

    更新日期:2017-08-01 00:00:00

  • Five novel species of the genus Nocardiopsis isolated from hypersaline soils and emended description of Nocardiopsis salina Li et al. 2004.

    abstract::Five novel Nocardiopsis strains isolated from hypersaline soils in China were subjected to a polyphasic analysis to determine their taxonomic position. All of the novel isolates could grow on agar plates at NaCl concentrations of up to 18 % (w/v), with optimum growth at 5-8 %. The DNA G+C contents of the novel strains...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.64033-0

    authors: Li WJ,Kroppenstedt RM,Wang D,Tang SK,Lee JC,Park DJ,Kim CJ,Xu LH,Jiang CL

    更新日期:2006-05-01 00:00:00

  • Kribbella catacumbae sp. nov. and Kribbella sancticallisti sp. nov., isolated from whitish-grey patinas in the catacombs of St Callistus in Rome, Italy.

    abstract::Several nocardioform actinomycetes were isolated from tufaceous surfaces with whitish-grey patinas in the catacombs of St Callistus in Rome, Italy. The morphology of the isolates and their chemotaxonomic characteristics such as LL-diaminopimelic acid in the cell-wall peptidoglycan, the major menaquinone of MK-9(H(4)),...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65613-0

    authors: Urzì C,De Leo F,Schumann P

    更新日期:2008-09-01 00:00:00

  • Wickerhamomyces arborarius f.a., sp. nov., an ascomycetous yeast species found in arboreal habitats on three different continents.

    abstract::Five strains representing a novel yeast species belonging to the genus Wickerhamomyces were independently isolated from Ecuador, Taiwan and the USA. One strain (CLQCA 10-161(T)) was isolated from the white flower of an unidentified plant species collected in the Maquipucuna cloud forest reserve, near Quito, in Ecuador...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.059162-0

    authors: James SA,Barriga EJC,Barahona PP,Harrington TC,Lee CF,Bond CJ,Roberts IN

    更新日期:2014-03-01 00:00:00

  • Bifidobacterium stercoris sp. nov., isolated from human faeces.

    abstract::Strain Eg1(T), an anaerobic, Gram-stain-positive, non-motile and non-spore-forming bacterium, was isolated from human faeces. The optimal temperature for growth was 37 °C and tests for oxidase and catalase activities gave negative results. Fructose-6-phosphate phosphoketolase activity was detected. Acid was pro...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.019943-0

    authors: Kim MS,Roh SW,Bae JW

    更新日期:2010-12-01 00:00:00

  • Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor.

    abstract::A novel anaerobic, mesophilic, hydrogen-producing bacterium, designated strain M2/40(T), was isolated from a mesophilic, two-phase, laboratory-scale biogas reactor fed continuously with maize silage supplemented with 5% wheat straw. 16S rRNA gene sequence comparison revealed an affiliation to the genus Clostridium sen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.059691-0

    authors: Hahnke S,Striesow J,Elvert M,Mollar XP,Klocke M

    更新日期:2014-08-01 00:00:00

  • Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid.

    abstract::A slightly beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain IMT-318T, was isolated from soil in a field located in Malvern, Alabama, USA. Phylogenetic analysis based on the 16S rRNA gene placed the strain within the genus Pigmentiphaga with highest 16S rRNA gene sequence similarity of 98.74 % and 98....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003355

    authors: Kämpfer P,Busse HJ,Criscuolo A,Bizet C,Clermont D,McInroy JA,Glaeser SP

    更新日期:2019-06-01 00:00:00

  • Wickerhamomyces psychrolipolyticus f.a., sp. nov., a novel yeast species producing two kinds of lipases with activity at different temperatures.

    abstract::Two yeast strains isolated from soil collected in Hokkaido, Japan, were found to secrete two extracellular lipases that exhibited activities at both 25 and 4 °C. Both strains could utilize olive oil, rapeseed oil, lard and fish oil as sole carbon sources. The similarity of the D1/D2 domain of the large subunit ribosom...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003894

    authors: Shimizu Y,Konno Y,Tomita Y

    更新日期:2020-02-01 00:00:00

  • Vagococcus entomophilus sp. nov., from the digestive tract of a wasp (Vespula vulgaris).

    abstract::Three unknown Gram-stain-positive, catalase-negative, facultatively anaerobic and coccus-shaped strains of bacteria were isolated from the digestive tracts of wasps (Vespula vulgaris). Analysis of 16S rRNA gene sequences revealed that these strains had identical sequences and showed that Vagococcus salmoninarum, with ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.054940-0

    authors: Killer J,Švec P,Sedláček I,Černohlávková J,Benada O,Hroncová Z,Havlík J,Vlková E,Rada V,Kopečný J,Kofroňová O

    更新日期:2014-03-01 00:00:00

  • Spirosoma metallilatum sp. nov., isolated from an automotive air conditioning system.

    abstract::A Gram-stain-negative, aerobic, rod-shaped and yellow-pigmented bacterial strain, designated TX0405T, was isolated from an automotive air conditioning system. Colonies were circular, convex, semi-translucent, smooth and yellow. The strain grew at 20-28°C (optimum, 28°C), at pH 6.0-7.5 (optimum, pH 6.5) and in the pres...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002533

    authors: Kim DU,Lee H,Lee S,Park S,Yoon JH,Ka JO

    更新日期:2018-02-01 00:00:00

  • Shewanella mangrovi sp. nov., an acetaldehyde-degrading bacterium isolated from mangrove sediment.

    abstract::A taxonomic study was carried out on strain YQH10T, which was isolated from mangrove sediment collected from Zhangzhou, China during the screening of acetaldehyde-degrading bacteria. Cells of strain YQH10T were Gram-stain-negative rods and pale brown-pigmented. Growth was observed at salinities from 0 to 11% and at te...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000313

    authors: Liu Y,Shang XX,Yi ZW,Gu L,Zeng RY

    更新日期:2015-08-01 00:00:00

  • Nocardiopsis rhizosphaerae sp. nov., isolated from rhizosphere soil of Halocnermum strobilaceum (Pall.) Bieb.

    abstract::An alkalitolerant actinomycete strain, designated EGI 80674T, was isolated from a rhizosphere soil of Halocnermumstrobilaceum (Pall.) Bieb in Xinjiang, north-west China and subjected to a taxonomic characterization using a polyphasic approach. Strain EGI 80674T formed white aerial hyphae with long spore chains. Whole-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001483

    authors: Zhang YG,Lu XH,Ding YB,Zhou XK,Wang HF,Guo JW,Liu YH,Duan YQ,Li WJ

    更新日期:2016-12-01 00:00:00

  • Vibrio rhizosphaerae sp. nov., a red-pigmented bacterium that antagonizes phytopathogenic bacteria.

    abstract::Two novel red-pigmented Vibrio strains, MSSRF3(T) and MSSRF10, with antibacterial activity against phytopathogens were isolated from the rhizosphere region of mangrove-associated wild rice (Porteresia coarctata Tateoka), in Pichavaram, India. The cells were Gram-negative, facultatively anaerobic and rod-shaped and wer...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65017-0

    authors: Kumar NR,Nair S

    更新日期:2007-10-01 00:00:00

  • Pseudomonas composti sp. nov., isolated from compost samples.

    abstract::Two unusual, Gram-negative, catalase- and oxidase-positive rods, designated C2(T) and C5, were isolated from compost samples. Comparative 16S rRNA gene sequencing studies demonstrated that both isolates were members of the genus Pseudomonas and belonged to the Pseudomonas aeruginosa group. Strain C2(T) was most closel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.027086-0

    authors: Gibello A,Vela AI,Martín M,Mengs G,Alonso PZ,Garbi C,Fernández-Garayzábal JF

    更新日期:2011-12-01 00:00:00

  • Proposal of Algoriphagus vanfongensis sp. nov., transfer of members of the genera Hongiella Yi and Chun 2004 emend. Nedashkovskaya et al. 2004 and Chimaereicella Tiago et al. 2006 to the genus Algoriphagus, and emended description of the genus Algoriphagu

    abstract::A taxonomic study of a novel marine, heterotrophic, non-gliding, halotolerant and light-pink-pigmented bacterium was carried out using a polyphasic approach. 16S rRNA gene sequence analysis revealed that strain KMM 6241(T) is a member of the phylum Bacteroidetes. Strain KMM 6241(T) formed a cluster with the genera Alg...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65073-0

    authors: Nedashkovskaya OI,Kim SB,Kwon KK,Shin DS,Luo X,Kim SJ,Mikhailov VV

    更新日期:2007-09-01 00:00:00

  • Thiobacter subterraneus gen. nov., sp. nov., an obligately chemolithoautotrophic, thermophilic, sulfur-oxidizing bacterium from a subsurface hot aquifer.

    abstract::A novel, thermophilic, obligately chemolithoautotrophic, sulfur/thiosulfate-oxidizing bacterium was isolated from subsurface geothermal aquifer water (temperature approximately 70 degrees C) in the Hishikari gold mine, Japan. Cells of the isolate, designated strain C55T, were motile, straight rods with a single polar ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63389-0

    authors: Hirayama H,Takai K,Inagaki F,Nealson KH,Horikoshi K

    更新日期:2005-01-01 00:00:00

  • Thauera lacus sp. nov., isolated from a saline lake in Inner Mongolia.

    abstract::A Gram-stain-negative, facultatively anaerobic, motile and rod-shaped bacterium, designated D20T, was isolated from the saline Lake Dai in Inner Mongolia, PR China. Growth of strain D20T occurred at 25-45 °C (optimum, 40 °C), pH 4.0-12.0 (optimum, 8.0) and with 0-3 % NaCl (w/v); (optimum, 0-1 %). The results of 16S rR...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003679

    authors: Zheng WS,Liang QY,Du ZJ

    更新日期:2019-12-01 00:00:00

  • Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders 'Frankiales' and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. an

    abstract::The phylogeny of the class Actinobacteria remains controversial, essentially because it is very sensitive to the choice of dataset and phylogenetic methods. We used a test proposed recently, based on complete genome data, which chooses among candidate species phylogenies based on the number of lateral gene transfers (...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.063966-0

    authors: Sen A,Daubin V,Abrouk D,Gifford I,Berry AM,Normand P

    更新日期:2014-11-01 00:00:00

  • Arenibacter amylolyticus sp. nov., an amylase-producing bacterium of the family Flavobacteriaceae isolated from marine water in India.

    abstract::A novel Gram-stain-negative, curved rod-shaped, 0.5-0.7 µm wide and 3.0-10.0 µm long, non-motile bacterium, designated strain AK53T, was isolated from a 5 m depth water sample collected from the Bay of Bengal, Visakhapatnam, India. Colonies on marine agar were circular, small, dark orange, shiny, smooth, translucent, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004664

    authors: Sidhu C,Saini MK,Srinivas Tanuku NR,Pinnaka AK

    更新日期:2021-01-27 00:00:00

  • Flavobacterium luticocti sp. nov., isolated from wastewater.

    abstract::A Gram-stain-negative, non-spore-forming, rod-shaped and non-motile bacterium, designated strain xz20T, was isolated from the wastewater of a municipal wastewater treatment plant in Xuzhou, China. The taxonomic status of strain xz20T was determined using a polyphasic approach. Growth occurred at 15-40 °C (optimum, 25-...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001634

    authors: Liu H,Lu P,Jin L,Zhu G

    更新日期:2017-02-01 00:00:00

  • Analysis of cellular fatty acids and phenotypic relationships of Agrobacterium, Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium species using the Sherlock Microbial Identification System.

    abstract::Previous studies have demonstrated that cellular fatty acid analysis is a useful tool for identifying unknown strains of rhizobia and establishing taxonomic relationships between the species. In this study, the fatty acid profiles of over 600 strains belonging to the genera Agrobacterium, Bradyrhizobium, Mesorhizobium...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-2-787

    authors: Tighe SW,de Lajudie P,Dipietro K,Lindström K,Nick G,Jarvis BD

    更新日期:2000-03-01 00:00:00

  • The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion.

    abstract::We analysed the taxonomic position of the genus Listonella based on phylogenetic, genomic and phenotypic data. The species of the genus Listonella were nested within the genus Vibrio according to the 16S rRNA gene sequence-based phylogenetic tree. The closest neighbour of Vibrio (Listonella) anguillarum strains LMG 44...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030015-0

    authors: Thompson FL,Thompson CC,Dias GM,Naka H,Dubay C,Crosa JH

    更新日期:2011-12-01 00:00:00

  • Pseudonocardia dioxanivorans sp. nov., a novel actinomycete that grows on 1,4-dioxane.

    abstract::An actinomycete strain (CB1190(T)) was previously isolated from industrial sludge contaminated with 1,4-dioxane. The cells of this culture are Gram-positive and exhibit branching aerial and vegetative mycelium. Analysis of the 16S rRNA gene sequence indicates that the strain belongs to the genus Pseudonocardia, closel...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63085-0

    authors: Mahendra S,Alvarez-Cohen L

    更新日期:2005-03-01 00:00:00

  • Kineococcus gypseus sp. nov., isolated from saline sediment.

    abstract::A novel Gram-stain-positive, aerobic, motile, non-spore-forming coccus-shaped actinomycete, designated strain YIM 121300T, was isolated from alkaline sediment in Yuanjiang, Yunnan province, south-west China. Phylogenetic analyses based on the 16S rRNA gene sequence showed that strain YIM 121300T was affiliated to the ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000478

    authors: Li Q,Li G,Chen X,Xu F,Li Y,Xu L,Jiang Y,Jiang C

    更新日期:2015-10-01 00:00:00

  • Paenochrobactrum pullorum sp. nov. isolated from a chicken.

    abstract::A Gram-stain-negative, rod-shaped, oxidase-positive, non-spore-forming, non-motile bacterium (strain 280(T)) isolated from a chicken was studied for its taxonomic allocation. 16S rRNA gene sequence analyses clearly allocated the isolate in the genus Paenochrobactrum group with a 16S rRNA gene sequence similarity of 98...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.061101-0

    authors: Kämpfer P,Poppel MT,Wilharm G,Glaeser SP,Busse HJ

    更新日期:2014-05-01 00:00:00

  • Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.

    abstract::A Gram-negative, non-motile, non-gliding, strictly aerobic, pale yellow colony-forming, rod-shaped bacterial strain, designated HM0024(T), was isolated from coastal seawater of the Yellow Sea and subjected to a polyphasic taxonomy study. Based on 16S rRNA gene sequence similarities, strain HM0024(T) was most closely r...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017707-0

    authors: Joung Y,Song J,Lee K,Oh HM,Joh K,Cho JC

    更新日期:2010-09-01 00:00:00

  • Kineococcus terrestris sp. nov. and Kineococcus aureolus sp. nov., isolated from saline sediment.

    abstract::Two novel actinobacteria, designated YIM 121936T and YIM 121940T, were isolated from alkaline sediment in Yuanjiang, China. The cells of the novel strains were Gram-stain-positive, aerobic, motile, non-spore-forming and coccus-shaped. The two strains both contained meso-diaminopimelic acid as the diagnostic diamino ac...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002380

    authors: Xu FJ,Li QY,Li GD,Chen X,Jiang Y,Jiang CL

    更新日期:2017-11-01 00:00:00

  • Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium.

    abstract::A Gram-positive, non-motile, non-spore-forming coccus (strain JS(T)) was isolated from kimchi (a traditional Korean food) and investigated using a polyphasic taxonomic approach. The 16S rRNA gene sequence similarity between strain JS(T) and its closest relative, Tetragenococcus halophilus IAM 1676(T), was 98.1%. The l...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63448-0

    authors: Lee M,Kim MK,Vancanneyt M,Swings J,Kim SH,Kang MS,Lee ST

    更新日期:2005-07-01 00:00:00

  • Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.

    abstract::Lactobacillus versmoldensis sp. nov. (KU-3T) was isolated from raw fermented sausages. The new species was present in high numbers, and frequently dominated the lactic acid bacteria (LAB) populations of the products. 16S rDNA sequence data revealed that the isolates are closely related to the species Lactobacillus kim...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02387-0

    authors: Kröckel L,Schillinger U,Franz CMAP,Bantleon A,Ludwig W

    更新日期:2003-03-01 00:00:00