Cell fate decisions: emerging roles for metabolic signals and cell morphology.

Abstract:

:Understanding how cell fate decisions are regulated is a fundamental goal of developmental and stem cell biology. Most studies on the control of cell fate decisions address the contributions of changes in transcriptional programming, epigenetic modifications, and biochemical differentiation cues. However, recent studies have found that other aspects of cell biology also make important contributions to regulating cell fate decisions. These cues can have a permissive or instructive role and are integrated into the larger network of signaling, functioning both upstream and downstream of developmental signaling pathways. Here, we summarize recent insights into how cell fate decisions are influenced by four aspects of cell biology: metabolism, reactive oxygen species (ROS), intracellular pH (pHi), and cell morphology. For each topic, we discuss how these cell biological cues interact with each other and with protein-based mechanisms for changing gene transcription. In addition, we highlight several questions that remain unanswered in these exciting and relatively new areas of the field.

journal_name

EMBO Rep

journal_title

EMBO reports

authors

Tatapudy S,Aloisio F,Barber D,Nystul T

doi

10.15252/embr.201744816

subject

Has Abstract

pub_date

2017-12-01 00:00:00

pages

2105-2118

issue

12

eissn

1469-221X

issn

1469-3178

pii

embr.201744816

journal_volume

18

pub_type

杂志文章,评审
  • The Ark1/Prk1 family of protein kinases. Regulators of endocytosis and the actin skeleton.

    abstract::The Ark/Prk serine/threonine kinases initiate phosphorylation cycles that control the endocytic machinery in mammalian cells and in yeast, and the actin cytoskeleton in yeast. The members of this protein family are unified by homologies in their kinase domain, but are generally diverse in their other domains. The evol...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/sj.embor.embor776

    authors: Smythe E,Ayscough KR

    更新日期:2003-03-01 00:00:00

  • Institutional ELN/LIMS deployment: Highly customizable ELN/LIMS platform as a cornerstone of digital transformation for life sciences research institutes.

    abstract::The systematic recording and management of experimental data in academic life science research remains an open problem. EPFL engaged in a program of ELN/LIMS deployment 6 years ago, encountering a host of fundamental questions at the institutional level and in each single laboratory. Here, based on our experience we a...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201949862

    authors: Argento N

    更新日期:2020-03-04 00:00:00

  • Mps1 promotes rapid centromere accumulation of Aurora B.

    abstract::Aurora B localization to mitotic centromeres, which is required for proper chromosome alignment during mitosis, relies on Haspin-dependent histone H3 phosphorylation and on Bub1-dependent histone H2A phosphorylation--which interacts with Borealin through a Shugoshin (Sgo) intermediate. We demonstrate that Mps1 stimula...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2012.93

    authors: van der Waal MS,Saurin AT,Vromans MJ,Vleugel M,Wurzenberger C,Gerlich DW,Medema RH,Kops GJ,Lens SM

    更新日期:2012-09-01 00:00:00

  • PDS5 proteins regulate the length of axial elements and telomere integrity during male mouse meiosis.

    abstract::Cohesin cofactors regulate the loading, maintenance, and release of cohesin complexes from chromosomes during mitosis but little is known on their role during vertebrate meiosis. One such cofactor is PDS5, which exists as two paralogs in somatic and germline cells, PDS5A and PDS5B, with unclear functions. Here, we hav...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201949273

    authors: Viera A,Berenguer I,Ruiz-Torres M,Gómez R,Guajardo A,Barbero JL,Losada A,Suja JA

    更新日期:2020-06-04 00:00:00

  • The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides.

    abstract::The imprint at the mat1 locus of Schizosaccharomyces pombe acts to initiate the replication-coupled recombination event that underlies mating-type switching. However, the nature of the imprint has been an area of dispute. Two alternative models have been proposed: one stated that the imprint is a nick in the DNA, wher...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400576

    authors: Vengrova S,Dalgaard JZ

    更新日期:2006-01-01 00:00:00

  • The biology of IQGAP proteins: beyond the cytoskeleton.

    abstract::IQGAP scaffold proteins are evolutionarily conserved in eukaryotes and facilitate the formation of complexes that regulate cytoskeletal dynamics, intracellular signaling, and intercellular interactions. Fungal and mammalian IQGAPs are implicated in cytokinesis. IQGAP1, IQGAP2, and IQGAP3 have diverse roles in vertebra...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.15252/embr.201439834

    authors: Hedman AC,Smith JM,Sacks DB

    更新日期:2015-04-01 00:00:00

  • Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases.

    abstract::Post-translational protein arginylation is essential for cardiovascular development and angiogenesis in mice and is mediated by arginyl-transfer RNA-protein transferases Ate1-a functionally conserved but poorly understood class of enzymes. Here, we used sequence analysis to detect the evolutionary relationship between...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400747

    authors: Rai R,Mushegian A,Makarova K,Kashina A

    更新日期:2006-08-01 00:00:00

  • Snail genes at the crossroads of symmetric and asymmetric processes in the developing mesoderm.

    abstract::Retinoic acid (RA) signalling ensures that vertebrate mesoderm segmentation is bilaterally synchronized, and corrects transient interferences from asymmetric left-right (L-R) signals involved in organ lateralization. Snail genes participate in both these processes and, although they are expressed symmetrically in the ...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400867

    authors: Morales AV,Acloque H,Ocaña OH,de Frutos CA,Gold V,Nieto MA

    更新日期:2007-01-01 00:00:00

  • Regulation of TOR by small GTPases.

    abstract::TOR is a conserved serine/threonine kinase that responds to nutrients, growth factors, the bioenergetic status of the cell and cellular stress to control growth, metabolism and ageing. A diverse group of small GTPases including Rheb, Rag, Rac1, RalA and Ryh1 play a variety of roles in the regulation of TOR. For exampl...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/embor.2011.257

    authors: Durán RV,Hall MN

    更新日期:2012-02-01 00:00:00

  • The dichotomy of yield and draught resistance: Translation challenges from basic research to crop adaptation to climate change.

    abstract::Global climate change and the increasing human population require crop varieties with higher yield and draught resistance. But meeting both goals is not an easy task for breeders and plant science. ...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.202051598

    authors: Moshelion M

    更新日期:2020-11-29 00:00:00

  • Processive kinesins require loose mechanical coupling for efficient collective motility.

    abstract::Processive motor proteins are stochastic steppers that perform actual mechanical steps for only a minor fraction of the time they are bound to the filament track. Motors usually work in teams and therefore the question arises whether the stochasticity of stepping can cause mutual interference when motors are mechanica...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2008.169

    authors: Bieling P,Telley IA,Piehler J,Surrey T

    更新日期:2008-11-01 00:00:00

  • Nanoscale spatial induction of ultraviolet photoproducts in cellular DNA by three-photon near-infrared absorption.

    abstract::The high-resolution spatial induction of ultraviolet (UV) photoproducts in mammalian cellular DNA is a goal of many scientists who study UV damage and repair. Here we describe how UV photoproducts can be induced in cellular DNA within nanometre dimensions by near-diffraction-limited 750 nm infrared laser radiation. Th...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400028

    authors: Meldrum RA,Botchway SW,Wharton CW,Hirst GJ

    更新日期:2003-12-01 00:00:00

  • Control of epidermal growth factor receptor endocytosis by receptor dimerization, rather than receptor kinase activation.

    abstract::Given that ligand binding is essential for the rapid internalization of epidermal growth factor receptor (EGFR), the events induced by ligand binding probably contribute to the regulation of EGFR internalization. These events include receptor dimerization, activation of intrinsic tyrosine kinase activity and autophosp...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400491

    authors: Wang Q,Villeneuve G,Wang Z

    更新日期:2005-10-01 00:00:00

  • Protein kinase D: coupling extracellular stimuli to the regulation of cell physiology.

    abstract::Protein kinase D (PKD) mediates the actions of stimuli that promote diacylglycerol (DAG) biogenesis. By phosphorylating effectors that regulate transcription, fission and polarized transport of Golgi vesicles, as well as cell migration and survival after oxidative stress, PKDs substantially expand the range of physiol...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/embor.2011.139

    authors: Fu Y,Rubin CS

    更新日期:2011-07-08 00:00:00

  • The NALCN ion channel is activated by M3 muscarinic receptors in a pancreatic beta-cell line.

    abstract::A previously uncharacterized putative ion channel, NALCN (sodium leak channel, non-selective), has been recently shown to be responsible for the tetrodotoxin (TTX)-resistant sodium leak current implicated in the regulation of neuronal excitability. Here, we show that NALCN encodes a current that is activated by M3 mus...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.125

    authors: Swayne LA,Mezghrani A,Varrault A,Chemin J,Bertrand G,Dalle S,Bourinet E,Lory P,Miller RJ,Nargeot J,Monteil A

    更新日期:2009-08-01 00:00:00

  • Prediction of amyloid aggregation in vivo.

    abstract::Many human diseases owe their pathology, to some degree, to the erroneous conversion of proteins from their soluble state into fibrillar, β-structured aggregates, often referred to as amyloid fibrils. Neurodegenerative diseases, such as Alzheimer and spongiform encephalopathies, as well as type 2 diabetes and both loc...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/embor.2011.116

    authors: Belli M,Ramazzotti M,Chiti F

    更新日期:2011-07-01 00:00:00

  • MAPL is a new mitochondrial SUMO E3 ligase that regulates mitochondrial fission.

    abstract::The modification of proteins by the small ubiquitin-like modifier (SUMO) is known to regulate an increasing array of cellular processes. SUMOylation of the mitochondrial fission GTPase dynamin-related protein 1 (DRP1) stimulates mitochondrial fission, suggesting that SUMOylation has an important function in mitochondr...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.86

    authors: Braschi E,Zunino R,McBride HM

    更新日期:2009-07-01 00:00:00

  • Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications.

    abstract::The biosynthesis of RNA includes its post-transcriptional modifications, and the crucial functions of these modifications have supported their conservation within all three kingdoms. For example, the modifications located within or adjacent to the anticodon of the transfer RNA (tRNA) enhance the accuracy of codon bind...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2008.104

    authors: Agris PF

    更新日期:2008-07-01 00:00:00

  • SLFN11 inhibits checkpoint maintenance and homologous recombination repair.

    abstract::High expression levels of SLFN11 correlate with the sensitivity of human cancer cells to DNA-damaging agents. However, little is known about the underlying mechanism. Here, we show that SLFN11 interacts directly with RPA1 and is recruited to sites of DNA damage in an RPA1-dependent manner. Furthermore, we establish th...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201540964

    authors: Mu Y,Lou J,Srivastava M,Zhao B,Feng XH,Liu T,Chen J,Huang J

    更新日期:2016-01-01 00:00:00

  • Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart.

    abstract::Cardiac dysfunctions dramatically increase with age. Revealing a currently unknown contributor to cardiac ageing, we report the age-dependent, cardiac-specific accumulation of the lysosphingolipid sphinganine (dihydrosphingosine, DHS) as an evolutionarily conserved hallmark of the aged vertebrate heart. Mechanisticall...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201847407

    authors: Ahuja G,Bartsch D,Yao W,Geissen S,Frank S,Aguirre A,Russ N,Messling JE,Dodzian J,Lagerborg KA,Vargas NE,Muck JS,Brodesser S,Baldus S,Sachinidis A,Hescheler J,Dieterich C,Trifunovic A,Papantonis A,Petrascheck M,Kli

    更新日期:2019-04-01 00:00:00

  • Dictyostelium chemotaxis: essential Ras activation and accessory signalling pathways for amplification.

    abstract::Central to chemotaxis is the molecular mechanism by which cells exhibit directed movement in shallow gradients of a chemoattractant. We used Dictyostelium mutants to investigate the minimal requirements for chemotaxis, and identified a basal signalling module providing activation of Ras at the leading edge, which is s...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2011.210

    authors: Kortholt A,Kataria R,Keizer-Gunnink I,Van Egmond WN,Khanna A,Van Haastert PJ

    更新日期:2011-12-01 00:00:00

  • Werner's syndrome protein (WRN) migrates Holliday junctions and co-localizes with RPA upon replication arrest.

    abstract::Individuals affected by the autosomal recessive disorder Werner's syndrome (WS) develop many of the symptoms characteristic of premature ageing. Primary fibroblasts cultured from WS patients exhibit karyotypic abnormalities and a reduced replicative life span. The WRN gene encodes a 3'-5' DNA helicase, and is a member...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1093/embo-reports/kvd004

    authors: Constantinou A,Tarsounas M,Karow JK,Brosh RM,Bohr VA,Hickson ID,West SC

    更新日期:2000-07-01 00:00:00

  • Regulation of nucleolar signalling to p53 through NEDDylation of L11.

    abstract::Several studies have shown that ribosomal proteins (RPs) are important mediators of p53 activation in response to nucleolar disruption; however, the pathways that control this signalling function of RPs are currently unknown. We have recently shown that RPs are targets for the ubiquitin-like molecule NEDD8, and that N...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.178

    authors: Sundqvist A,Liu G,Mirsaliotis A,Xirodimas DP

    更新日期:2009-10-01 00:00:00

  • Monitoring agonist-promoted conformational changes of beta-arrestin in living cells by intramolecular BRET.

    abstract::Recruitment of beta-arrestin (beta-arr) to agonist-stimulated G-protein-coupled receptors (GPCRs) has a crucial role in controlling signalling efficacy and selectivity. When translocated to the receptor, beta-arr is believed to undergo important conformational rearrangement necessary for its downstream actions. To pro...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400373

    authors: Charest PG,Terrillon S,Bouvier M

    更新日期:2005-04-01 00:00:00

  • Limiting DNA replication to once and only once.

    abstract::In Escherichia coli cells, the origin of chromosomal replication is temporarily inactivated after initiation has occurred. Origin sequestration is the first line of defence against over-initiation, providing a time window during which the initiation potential can be reduced by: (i) titration of DnaA proteins to newly ...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1093/embo-reports/kvd116

    authors: Boye E,Løbner-Olesen A,Skarstad K

    更新日期:2000-12-01 00:00:00

  • Cease and desist: modulating short-range Dpp signalling in the stem-cell niche.

    abstract::Drosophila ovarian germline stem cells (GSCs) are maintained by the extracellular BMP2/4 orthologue Dpp, which is produced from the surrounding somatic niche. The Dpp signal has a short range; it induces a response in GSCs within the niche, but is rapidly extinguished in their progeny only one cell-diameter away. To e...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/embor.2011.80

    authors: Harris RE,Ashe HL

    更新日期:2011-06-01 00:00:00

  • The solution structure of PapGII from uropathogenic Escherichia coli and its recognition of glycolipid receptors.

    abstract::Uropathogenic Escherichia coli (UPEC) is the primary cause of symptomatic urinary tract infection. The P-pili, a bacterial surface organelle, mediates the bacterial host--cell adhesion. The PapG adhesin has generated much interest in recent years, not only because of its clinical value, i.e. in the prevention of micro...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1093/embo-reports/kve133

    authors: Sung MA,Fleming K,Chen HA,Matthews S

    更新日期:2001-07-01 00:00:00

  • Action and redaction.

    abstract::Howy Jacobs reminisces about his many editorials and asks whether they have ever been read by anyone. ...

    journal_title:EMBO reports

    pub_type: 社论

    doi:10.15252/embr.202050838

    authors: Jacobs H

    更新日期:2020-07-03 00:00:00

  • An endocytic pathway as a target of tubby for regulation of fat storage.

    abstract::The tubby loci provide a unique opportunity to study adult-onset obesity. Mutation in either mammalian tubby or its homologue in Caenorhabditis elegans, tub-1, results in increased fat storage. Previously, we have shown that TUB-1 interacts with a new Rab GTPase-activating protein, RBG-3, for the regulation of fat sto...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7401055

    authors: Mukhopadhyay A,Pan X,Lambright DG,Tissenbaum HA

    更新日期:2007-10-01 00:00:00

  • Conformational switch of angiotensin II type 1 receptor underlying mechanical stress-induced activation.

    abstract::The angiotensin II type 1 (AT(1)) receptor is a G protein-coupled receptor that has a crucial role in the development of load-induced cardiac hypertrophy. Here, we show that cell stretch leads to activation of the AT(1) receptor, which undergoes an anticlockwise rotation and a shift of transmembrane (TM) 7 into the li...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7401157

    authors: Yasuda N,Miura S,Akazawa H,Tanaka T,Qin Y,Kiya Y,Imaizumi S,Fujino M,Ito K,Zou Y,Fukuhara S,Kunimoto S,Fukuzaki K,Sato T,Ge J,Mochizuki N,Nakaya H,Saku K,Komuro I

    更新日期:2008-02-01 00:00:00