Discovery and visualization of structural biomarkers from MRI using transport-based morphometry.

Abstract:

:Disease in the brain is often associated with subtle, spatially diffuse, or complex tissue changes that may lie beneath the level of gross visual inspection, even on magnetic resonance imaging (MRI). Unfortunately, current computer-assisted approaches that examine pre-specified features, whether anatomically-defined (i.e. thalamic volume, cortical thickness) or based on pixelwise comparison (i.e. deformation-based methods), are prone to missing a vast array of physical changes that are not well-encapsulated by these metrics. In this paper, we have developed a technique for automated pattern analysis that can fully determine the relationship between brain structure and observable phenotype without requiring any a priori features. Our technique, called transport-based morphometry (TBM), is an image transformation that maps brain images losslessly to a domain where they become much more separable. The new approach is validated on structural brain images of healthy older adult subjects where even linear models for discrimination, regression, and blind source separation enable TBM to independently discover the characteristic changes of aging and highlight potential mechanisms by which aerobic fitness may mediate brain health later in life. TBM is a generative approach that can provide visualization of physically meaningful shifts in tissue distribution through inverse transformation. The proposed framework is a powerful technique that can potentially elucidate genotype-structural-behavioral associations in myriad diseases.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Kundu S,Kolouri S,Erickson KI,Kramer AF,McAuley E,Rohde GK

doi

10.1016/j.neuroimage.2017.11.006

subject

Has Abstract

pub_date

2018-02-15 00:00:00

pages

256-275

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(17)30915-1

journal_volume

167

pub_type

杂志文章
  • Neural mechanisms involved in mental imagery and observation of gait.

    abstract::Brain activity during observation and imagery of gait was investigated. Sixteen subjects were scanned with a 3-Tesla MRI scanner while viewing six types of video clips: observation of gait movement (GO) from the third-person perspective, observation of stepping movement, observation of standing posture, "virtual walki...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.03.010

    authors: Iseki K,Hanakawa T,Shinozaki J,Nankaku M,Fukuyama H

    更新日期:2008-07-01 00:00:00

  • Global evaluation of contributions of GABA A, AMPA and NMDA receptors to orientation maps in cat's visual cortex.

    abstract::Orientation selectivity is a fundamental property of neurons in the visual cortex for form perception. Cortical cells with similar preferred orientations are organized in a columnar manner to form a two-dimensional orientation map in the primary visual cortex (area 17). There are several mechanisms underlying the gene...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.12.014

    authors: Yu H,Chen X,Sun C,Shou T

    更新日期:2008-04-01 00:00:00

  • Tonotopic organization of human auditory cortex.

    abstract::The organization of tonotopic fields in human auditory cortex was investigated using functional magnetic resonance imaging. Subjects were presented with stochastically alternating multi-tone sequences in six different frequency bands, centered at 200, 400, 800, 1600, 3200, and 6400 Hz. Two mirror-symmetric frequency g...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.01.046

    authors: Humphries C,Liebenthal E,Binder JR

    更新日期:2010-04-15 00:00:00

  • Template based rotation: a method for functional connectivity analysis with a priori templates.

    abstract::Functional connectivity magnetic resonance imaging (fcMRI) is a powerful tool for understanding the network level organization of the brain in research settings and is increasingly being used to study large-scale neuronal network degeneration in clinical trial settings. Presently, a variety of techniques, including se...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.08.022

    authors: Schultz AP,Chhatwal JP,Huijbers W,Hedden T,van Dijk KR,McLaren DG,Ward AM,Wigman S,Sperling RA

    更新日期:2014-11-15 00:00:00

  • Auditory cortical delta-entrainment interacts with oscillatory power in multiple fronto-parietal networks.

    abstract::The timing of slow auditory cortical activity aligns to the rhythmic fluctuations in speech. This entrainment is considered to be a marker of the prosodic and syllabic encoding of speech, and has been shown to correlate with intelligibility. Yet, whether and how auditory cortical entrainment is influenced by the activ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.11.062

    authors: Keitel A,Ince RAA,Gross J,Kayser C

    更新日期:2017-02-15 00:00:00

  • Attention and reality constraints on the neural processes of empathy for pain.

    abstract::Recent brain imaging studies have shown that the neural substrates underlying the ability to infer and share the feeling of pain of other individuals overlap with the pain matrix that mediates the process of one's own pain. While there has been evidence that the neural activity mediating pain experience is influenced ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.02.025

    authors: Gu X,Han S

    更新日期:2007-05-15 00:00:00

  • Computational modelling of movement-related beta-oscillatory dynamics in human motor cortex.

    abstract::Oscillatory activity in the beta range, in human primary motor cortex (M1), shows interesting dynamics that are tied to behaviour and change systematically in disease. To investigate the pathophysiology underlying these changes, we must first understand how changes in beta activity are caused in healthy subjects. We t...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.02.078

    authors: Bhatt MB,Bowen S,Rossiter HE,Dupont-Hadwen J,Moran RJ,Friston KJ,Ward NS

    更新日期:2016-06-01 00:00:00

  • Genome-wide association analysis of secondary imaging phenotypes from the Alzheimer's disease neuroimaging initiative study.

    abstract::The aim of this paper is to systematically evaluate a biased sampling issue associated with genome-wide association analysis (GWAS) of imaging phenotypes for most imaging genetic studies, including the Alzheimer's Disease Neuroimaging Initiative (ADNI). Specifically, the original sampling scheme of these imaging genet...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.09.055

    authors: Zhu W,Yuan Y,Zhang J,Zhou F,Knickmeyer RC,Zhu H,Alzheimer's Disease Neuroimaging Initiative.

    更新日期:2017-02-01 00:00:00

  • Joint prediction of longitudinal development of cortical surfaces and white matter fibers from neonatal MRI.

    abstract::The human brain can be modeled as multiple interrelated shapes (or a multishape), each for characterizing one aspect of the brain, such as the cortex and white matter pathways. Predicting the developing multishape is a very challenging task due to the contrasting nature of the developmental trajectories of the constit...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.03.012

    authors: Rekik I,Li G,Yap PT,Chen G,Lin W,Shen D

    更新日期:2017-05-15 00:00:00

  • Neural correlates of a 'pessimistic' attitude when anticipating events of unknown emotional valence.

    abstract::Since we do not know what future holds for us, we prepare for expected emotional events in order to deal with a pleasant or threatening environment. From an evolutionary perspective, it makes sense to be particularly prepared for the worst-case scenario. We were interested to evaluate whether this assumption is reflec...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.09.035

    authors: Herwig U,Kaffenberger T,Baumgartner T,Jäncke L

    更新日期:2007-01-15 00:00:00

  • A voxel-based investigation of brain structure in male adolescents with autistic spectrum disorder.

    abstract::Autistic spectrum disorder (ASD) has been associated with abnormal neuroanatomy in many imaging and neuropathological studies. Both global brain volume differences and differences in the size of specific neural structures have been reported. Here, we report a voxel-based morphometric whole brain analysis, using a grou...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2004.02.029

    authors: Waiter GD,Williams JH,Murray AD,Gilchrist A,Perrett DI,Whiten A

    更新日期:2004-06-01 00:00:00

  • Normative database of the serotonergic system in healthy subjects using multi-tracer PET.

    abstract::The highly diverse serotonergic system with at least 16 different receptor subtypes is implicated in the pathophysiology of most neuropsychiatric disorders including affective and anxiety disorders, obsessive compulsive disorder, post-traumatic stress disorder, eating disorders, sleep disturbance, attention deficit/hy...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.07.001

    authors: Savli M,Bauer A,Mitterhauser M,Ding YS,Hahn A,Kroll T,Neumeister A,Haeusler D,Ungersboeck J,Henry S,Isfahani SA,Rattay F,Wadsak W,Kasper S,Lanzenberger R

    更新日期:2012-10-15 00:00:00

  • Source stability index: a novel beamforming based localisation metric.

    abstract::Many experimental studies into human brain function now use magnetoencephalography (MEG) to non-invasively investigate human neuronal activity. A number of different analysis techniques use the observed magnetic fields outside of the head to estimate the location and strength of the underlying neural generators. One s...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.09.055

    authors: Hymers M,Prendergast G,Johnson SR,Green GG

    更新日期:2010-01-15 00:00:00

  • Role of the human retrosplenial cortex/parieto-occipital sulcus in perspective priming.

    abstract::The ability to imagine the world from a different viewpoint is a fundamental competence for spatial reorientation and for imagining what another individual sees in the environment. Here, we investigated the neural bases of such an ability using functional magnetic resonance imaging. Healthy participants detected targe...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.10.040

    authors: Sulpizio V,Committeri G,Lambrey S,Berthoz A,Galati G

    更新日期:2016-01-15 00:00:00

  • Experience-dependent modulation of the visual evoked potential: Testing effect sizes, retention over time, and associations with age in 415 healthy individuals.

    abstract::Experience-dependent modulation of the visual evoked potential (VEP) is a promising proxy measure of synaptic plasticity in the cerebral cortex. However, existing studies are limited by small to moderate sample sizes as well as by considerable variability in how VEP modulation is quantified. In the present study, we u...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117302

    authors: Valstad M,Moberget T,Roelfs D,Slapø NB,Timpe CMF,Beck D,Richard G,Sæther LS,Haatveit B,Skaug KA,Nordvik JE,Hatlestad-Hall C,Einevoll GT,Mäki-Marttunen T,Westlye LT,Jönsson EG,Andreassen OA,Elvsåshagen T

    更新日期:2020-12-01 00:00:00

  • Cortical reconstruction using implicit surface evolution: accuracy and precision analysis.

    abstract::Two different studies were conducted to assess the accuracy and precision of an algorithm developed for automatic reconstruction of the cerebral cortex from T1-weighted magnetic resonance (MR) brain images. Repeated scans of three different brains were used to quantify the precision of the algorithm, and manually sele...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2005.08.061

    authors: Tosun D,Rettmann ME,Naiman DQ,Resnick SM,Kraut MA,Prince JL

    更新日期:2006-02-01 00:00:00

  • Neighborhood deprivation, prefrontal morphology and neurocognition in late childhood to early adolescence.

    abstract:BACKGROUND:Neighborhood deprivation adversely effects neurodevelopment and cognitive function; however, mechanisms remain unexplored. Neighborhood deprivation could be particularly impactful in late childhood/early adolescence, in neural regions with protracted developmental trajectories, e.g., prefrontal cortex (PFC)....

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117086

    authors: Vargas T,Damme KSF,Mittal VA

    更新日期:2020-10-15 00:00:00

  • Evidence for a refractory period in the hemodynamic response to visual stimuli as measured by MRI.

    abstract::We investigated the effects of paired presentations of visual stimuli upon the evoked hemodynamic response of visual cortex measured by magnetic resonance imaging (MRI). Stimuli were identical 500-ms high-contrast checkerboard patterns, presented singly or with an interpair interval (IPI) of 1, 2, 4, or 6 s (onset-to-...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2000.0553

    authors: Huettel SA,McCarthy G

    更新日期:2000-05-01 00:00:00

  • Probabilistic model-based functional parcellation reveals a robust, fine-grained subdivision of the striatum.

    abstract::The striatum is involved in many different aspects of behaviour, reflected by the variety of cortical areas that provide input to this structure. This input is topographically organized and is likely to result in functionally specific signals. Such specificity can be examined using functional clustering approaches. He...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.06.084

    authors: Janssen RJ,Jylänki P,Kessels RP,van Gerven MA

    更新日期:2015-10-01 00:00:00

  • Heterogeneous increases of regional cerebral blood flow during preterm brain development: Preliminary assessment with pseudo-continuous arterial spin labeled perfusion MRI.

    abstract::The human brain develops rapidly during 32-45 postmenstrual weeks (PMW), a critical stage characterized by dramatic increases of metabolic demand. The increasing metabolic demand can be inferred through measurements of regional cerebral blood flow (CBF), which might be coupled to regional metabolism in preterm brains....

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.12.034

    authors: Ouyang M,Liu P,Jeon T,Chalak L,Heyne R,Rollins NK,Licht DJ,Detre JA,Roberts TPL,Lu H,Huang H

    更新日期:2017-02-15 00:00:00

  • Prospective motion correction of high-resolution magnetic resonance imaging data in children.

    abstract::Motion artifacts pose significant problems for the acquisition and analysis of high-resolution magnetic resonance imaging data. These artifacts can be particularly severe when studying pediatric populations, where greater patient movement reduces the ability to clearly view and reliably measure anatomy. In this study,...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.06.017

    authors: Brown TT,Kuperman JM,Erhart M,White NS,Roddey JC,Shankaranarayanan A,Han ET,Rettmann D,Dale AM

    更新日期:2010-10-15 00:00:00

  • Resting state network estimation in individual subjects.

    abstract::Resting state functional magnetic resonance imaging (fMRI) has been used to study brain networks associated with both normal and pathological cognitive functions. The objective of this work is to reliably compute resting state network (RSN) topography in single participants. We trained a supervised classifier (multi-l...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.05.108

    authors: Hacker CD,Laumann TO,Szrama NP,Baldassarre A,Snyder AZ,Leuthardt EC,Corbetta M

    更新日期:2013-11-15 00:00:00

  • Motor imagery in mental rotation: an fMRI study.

    abstract::Twelve right-handed men performed two mental rotation tasks and two control tasks while whole-head functional magnetic resonance imaging was applied. Mental rotation tasks implied the comparison of different sorts of stimulus pairs, viz. pictures of hands and pictures of tools, which were either identical or mirror im...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1290

    authors: Vingerhoets G,de Lange FP,Vandemaele P,Deblaere K,Achten E

    更新日期:2002-11-01 00:00:00

  • Biological motion processing: the left cerebellum communicates with the right superior temporal sulcus.

    abstract::The cerebellum is thought to be engaged not only in motor control, but also in the neural network dedicated to visual processing of body motion. However, the pattern of connectivity within this network, in particular, between the cortical circuitry for observation of others' actions and the cerebellum remains largely ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.08.039

    authors: Sokolov AA,Erb M,Gharabaghi A,Grodd W,Tatagiba MS,Pavlova MA

    更新日期:2012-02-01 00:00:00

  • Using multiple imputation to efficiently correct cerebral MRI whole brain lesion and atrophy data in patients with multiple sclerosis.

    abstract::Automated segmentation of brain MRI scans into tissue classes is commonly used for the assessment of multiple sclerosis (MS). However, manual correction of the resulting brain tissue label maps by an expert reader remains necessary in many cases. Since automated segmentation data awaiting manual correction are "missin...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.06.037

    authors: Chua AS,Egorova S,Anderson MC,Polgar-Turcsanyi M,Chitnis T,Weiner HL,Guttmann CR,Bakshi R,Healy BC

    更新日期:2015-10-01 00:00:00

  • From Pavlov to pain: How predictability affects the anticipation and processing of visceral pain in a fear conditioning paradigm.

    abstract::Conditioned pain-related fear may contribute to hyperalgesia and central sensitization, but this has not been tested for interoceptive, visceral pain. The underlying ability to accurately predict pain is based on predictive cue properties and may alter the sensory processing and cognitive-emotional modulation of pain ...

    journal_title:NeuroImage

    pub_type: 杂志文章,随机对照试验

    doi:10.1016/j.neuroimage.2016.01.064

    authors: Labrenz F,Icenhour A,Schlamann M,Forsting M,Bingel U,Elsenbruch S

    更新日期:2016-04-15 00:00:00

  • Effect of task difficulty on the functional anatomy of temporal processing.

    abstract::Temporal processing underlies many aspects of human perception, performance and cognition. The present study used fMRI to examine the functional neuroanatomy of a temporal discrimination task and to address two questions highlighted by previous studies: (1) the effect of task difficulty on neuronal activation and (2) ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.02.036

    authors: Tregellas JR,Davalos DB,Rojas DC

    更新日期:2006-08-01 00:00:00

  • Sex differences in the neural correlates of child facial resemblance: an event-related fMRI study.

    abstract::Detection of genetic relatedness (i.e. kinship) impacts the social, parental, and sexual behavior of many species. In humans, self-referent phenotype matching based on facial resemblance may indicate kinship. For example, faces that resemble ours are perceived as more trustworthy and attractive. Sex differences in beh...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2004.12.037

    authors: Platek SM,Keenan JP,Mohamed FB

    更新日期:2005-05-01 00:00:00

  • Faith and oscillations recovered: On analyzing EEG/MEG signals during tACS.

    abstract::Despite recent success in analyzing brain oscillations recorded during transcranial alternating current stimulation (tACS), the field still requires further research to establish standards in artifact removal methods. This includes taking a step back from the removal of the tACS artifact and thoroughly characterizing ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.11.022

    authors: Neuling T,Ruhnau P,Weisz N,Herrmann CS,Demarchi G

    更新日期:2017-02-15 00:00:00

  • Intersubject similarity of personality is associated with intersubject similarity of brain connectivity patterns.

    abstract::Personality is a central high-level psychological concept that defines individual human beings and has been associated with a variety of real-world outcomes (e.g., mental health and academic performance). Using 2 h, high resolution, functional magnetic resonance imaging (fMRI) resting state data of 984 (primary datase...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.10.062

    authors: Liu W,Kohn N,Fernández G

    更新日期:2019-02-01 00:00:00