Blood triglyceride levels are associated with DNA methylation at the serine metabolism gene PHGDH.

Abstract:

:Efficient interventions to reduce blood triglycerides are few; newer and more tolerable intervention targets are needed. Understanding the molecular mechanisms underlying blood triglyceride levels variation is key to identifying new therapies. To explore the role of epigenetic mechanisms on triglyceride levels, a blood methylome scan was conducted in 199 individuals from 5 French-Canadian families ascertained on venous thromboembolism, and findings were replicated in 324 French unrelated patients with venous thromboembolism. Genetic context and functional relevance were investigated. Two DNA methylation sites associated with triglyceride levels were identified. The first one, located in the ABCG1 gene, was recently reported, whereas the second one, located in the promoter of the PHGDH gene, is novel. The PHGDH methylation site, cg14476101, was found to be associated with variation in triglyceride levels in a threshold manner: cg14476101 was inversely associated with triglyceride levels only when triglyceride levels were above 1.12 mmol/L (discovery P-value = 8.4 × 10-6; replication P-value = 0.0091). Public databases findings supported a functional role of cg14476101 on PHGDH expression. PHGDH catalyses the first step in the serine biosynthesis pathway. These findings highlight the role of epigenetic regulation of the PHGDH gene in triglyceride metabolism, providing novel insights on putative intervention targets.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Truong V,Huang S,Dennis J,Lemire M,Zwingerman N,Aïssi D,Kassam I,Perret C,Wells P,Morange PE,Wilson M,Trégouët DA,Gagnon F

doi

10.1038/s41598-017-09552-z

subject

Has Abstract

pub_date

2017-09-11 00:00:00

pages

11207

issue

1

issn

2045-2322

pii

10.1038/s41598-017-09552-z

journal_volume

7

pub_type

杂志文章
  • Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types.

    abstract::To date, analyses of individual targets have provided evidence of a miRNA targetome that extends beyond the boundaries of messenger RNAs (mRNAs) and can involve non-Watson-Crick base pairing in the miRNA seed region. Here we report our findings from analyzing 34 Argonaute HITS-CLIP datasets from several human and mous...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05947

    authors: Clark PM,Loher P,Quann K,Brody J,Londin ER,Rigoutsos I

    更新日期:2014-08-08 00:00:00

  • Proteasome dysfunction in alveolar type 2 epithelial cells is associated with acute respiratory distress syndrome.

    abstract::Proteasomes are a critical component of quality control that regulate turnover of short-lived, unfolded, and misfolded proteins. Proteasome activity has been therapeutically targeted and considered as a treatment option for several chronic lung disorders including pulmonary fibrosis. Although pharmacologic inhibition ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49020-4

    authors: Sitaraman S,Na CL,Yang L,Filuta A,Bridges JP,Weaver TE

    更新日期:2019-08-29 00:00:00

  • Sex-specific glioma genome-wide association study identifies new risk locus at 3p21.31 in females, and finds sex-differences in risk at 8q24.21.

    abstract::Incidence of glioma is approximately 50% higher in males. Previous analyses have examined exposures related to sex hormones in women as potential protective factors for these tumors, with inconsistent results. Previous glioma genome-wide association studies (GWAS) have not stratified by sex. Potential sex-specific gen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24580-z

    authors: Ostrom QT,Kinnersley B,Wrensch MR,Eckel-Passow JE,Armstrong G,Rice T,Chen Y,Wiencke JK,McCoy LS,Hansen HM,Amos CI,Bernstein JL,Claus EB,Il'yasova D,Johansen C,Lachance DH,Lai RK,Merrell RT,Olson SH,Sadetzki S,Schi

    更新日期:2018-05-09 00:00:00

  • Periodic and transient motions of large woodpeckers.

    abstract::Two types of periodic and transient motions of large woodpeckers are considered. A drumming woodpecker may be modeled as a harmonic oscillator with a periodic forcing function. The transient behavior that occurs after the forcing is turned off suggests that the double knocks of Campephilus woodpeckers may be modeled i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13035-6

    authors: Collins MD

    更新日期:2017-10-02 00:00:00

  • Transition metal sulfides grown on graphene fibers for wearable asymmetric supercapacitors with high volumetric capacitance and high energy density.

    abstract::Fiber shaped supercapacitors are promising candidates for wearable electronics because they are flexible and light-weight. However, a critical challenge of the widespread application of these energy storage devices is their low cell voltages and low energy densities, resulting in limited run-time of the electronics. H...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26890

    authors: Cai W,Lai T,Lai J,Xie H,Ouyang L,Ye J,Yu C

    更新日期:2016-06-01 00:00:00

  • Renal Prognosis and Related Risk Factors for Henoch-Schönlein Purpura Nephritis: A Chinese Adult Patient Cohort.

    abstract::This study investigated the clinicopathological characteristics of Henoch-Schönlein purpura nephritis (HSPN) in Chinese adult patients and analyzed the renal outcomes and prognostic risk factors for progression to end-stage renal disease (ESRD). Adult patients who had biopsy-proven HSPN were studied. Their clinicopath...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23638-2

    authors: Huang X,Wu X,Le W,Hao Y,Wu J,Zeng C,Liu Z,Tang Z

    更新日期:2018-04-03 00:00:00

  • Atomic, electronic and magnetic structure of an oxygen interstitial in neutron-irradiated Al2O3 single crystals.

    abstract::A single radiation-induced superoxide ion [Formula: see text] has been observed for the first time in metal oxides. This structural defect has been revealed in fast-neutron-irradiated (6.9×1018 n/cm2) corundum (α-Al2O3) single crystals using the EPR method. Based on the angular dependence of the EPR lines at the magne...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72958-9

    authors: Seeman V,Lushchik A,Shablonin E,Prieditis G,Gryaznov D,Platonenko A,Kotomin EA,Popov AI

    更新日期:2020-09-28 00:00:00

  • Impact of Body Mass Index on Oncological Outcomes of Prostate Cancer Patients after Radical Prostatectomy.

    abstract::Obesity, often represented by higher body mass index (BMI), is not yet fully understood as a potential risk factor for poor clinical outcomes of prostate cancer (PCa) after radical prostatectomy (RP). This study aimed to evaluate the relationship between BMI and biochemical recurrence (BCR)-free survival in RP patient...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30473-y

    authors: Yu YD,Byun SS,Lee SE,Hong SK

    更新日期:2018-08-10 00:00:00

  • Engineered mesenchymal stem-cell-sheets patches prevents postoperative pancreatic leakage in a rat model.

    abstract::Post-operative pancreatic fistula (POPF) following pancreatic resection is a life-threatening surgical complication. Cell sheets were prepared and harvested using temperature-responsive culture dishes and transplanted as patches to seal POPF. Two different mesenchymal stem cell (MSC) sheets were compared in terms of t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18490-9

    authors: Kim SR,Yi HJ,Lee YN,Park JY,Hoffman RM,Okano T,Shim IK,Kim SC

    更新日期:2018-01-10 00:00:00

  • Verteporfin inhibits growth of human glioma in vitro without light activation.

    abstract::Verteporfin (VP), a light-activated drug used in photodynamic therapy for the treatment of choroidal neovascular membranes, has also been shown to be an effective inhibitor of malignant cells. Recently, studies have demonstrated that, even without photo-activation, VP may still inhibit certain tumor cell lines, includ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07632-8

    authors: Al-Moujahed A,Brodowska K,Stryjewski TP,Efstathiou NE,Vasilikos I,Cichy J,Miller JW,Gragoudas E,Vavvas DG

    更新日期:2017-08-08 00:00:00

  • CD43 sialoglycoprotein modulates cardiac inflammation and murine susceptibility to Trypanosoma cruzi infection.

    abstract::CD43 (leukosialin) is a large sialoglycoprotein abundantly expressed on the surface of most cells from the hematopoietic lineage. CD43 is directly involved in the contact between cells participating in a series of events such as signaling, adherence and host parasite interactions. In this study we examined the role of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45138-7

    authors: Alisson-Silva F,Mantuano NR,Lopes AL,Vasconcelos-Dos-Santos A,Vale AM,Costa MM,Cannon JL,Oliveira AC,Todeschini AR

    更新日期:2019-06-13 00:00:00

  • α7 nicotinic acetylcholine receptor signaling modulates the inflammatory phenotype of fetal brain microglia: first evidence of interference by iron homeostasis.

    abstract::Neuroinflammation in utero may result in life-long neurological disabilities. Microglia play a pivotal role, but the mechanisms are poorly understood. No early postnatal treatment strategies exist to enhance neuroprotective potential of microglia. We hypothesized that agonism on α7 nicotinic acetylcholine receptor (α7...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09439-z

    authors: Cortes M,Cao M,Liu HL,Moore CS,Durosier LD,Burns P,Fecteau G,Desrochers A,Barreiro LB,Antel JP,Frasch MG

    更新日期:2017-09-06 00:00:00

  • Using network analysis for the prediction of treatment dropout in patients with mood and anxiety disorders: A methodological proof-of-concept study.

    abstract::There are large health, societal, and economic costs associated with attrition from psychological services. The recently emerged, innovative statistical tool of complex network analysis was used in the present proof-of-concept study to improve the prediction of attrition. Fifty-eight patients undergoing psychological ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25953-0

    authors: Lutz W,Schwartz B,Hofmann SG,Fisher AJ,Husen K,Rubel JA

    更新日期:2018-05-18 00:00:00

  • Conductivity-limiting bipolar thermal conductivity in semiconductors.

    abstract::Intriguing experimental results raised the question about the fundamental mechanisms governing the electron-hole coupling induced bipolar thermal conduction in semiconductors. Our combined theoretical analysis and experimental measurements show that in semiconductors bipolar thermal transport is in general a "conducti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10136

    authors: Wang S,Yang J,Toll T,Yang J,Zhang W,Tang X

    更新日期:2015-05-13 00:00:00

  • In vivo detection of cucurbit[6]uril, a hyperpolarized xenon contrast agent for a xenon magnetic resonance imaging biosensor.

    abstract::The Hyperpolarized gas Chemical Exchange Saturation Transfer (HyperCEST) Magnetic Resonance (MR) technique has the potential to increase the sensitivity of a hyperpolarized xenon-129 MRI contrast agent. Signal enhancement is accomplished by selectively depolarizing the xenon within a cage molecule which, upon exchange...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41027

    authors: Hane FT,Li T,Smylie P,Pellizzari RM,Plata JA,DeBoef B,Albert MS

    更新日期:2017-01-20 00:00:00

  • Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer.

    abstract::Bivalent (poised or paused) chromatin comprises activating and repressing histone modifications at the same location. This combination of epigenetic marks at promoter or enhancer regions keeps genes expressed at low levels but poised for rapid activation. Typically, DNA at bivalent promoters is only lowly methylated i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37393

    authors: Bernhart SH,Kretzmer H,Holdt LM,Jühling F,Ammerpohl O,Bergmann AK,Northoff BH,Doose G,Siebert R,Stadler PF,Hoffmann S

    更新日期:2016-11-23 00:00:00

  • GIS and AHP Techniques Based Delineation of Groundwater Potential Zones: a case study from Southern Western Ghats, India.

    abstract::Over-exploitation of groundwater and marked changes in climate over the years have imposed immense pressure on the global groundwater resources. As demand of potable water increases across the globe for human consumption, agriculture and industrial uses, the need to evaluate the groundwater potential and productivity ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38567-x

    authors: Arulbalaji P,Padmalal D,Sreelash K

    更新日期:2019-02-14 00:00:00

  • Author Correction: Lipidomic Signatures of Nonhuman Primates with Radiation-Induced Hematopoietic Syndrome.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-42491-5

    authors: Pannkuk EL,Laiakis EC,Singh VK,Fornace AJ

    更新日期:2019-05-03 00:00:00

  • Efficacy of three-dimensionally printed polycaprolactone/beta tricalcium phosphate scaffold on mandibular reconstruction.

    abstract::It has been demonstrated that development of three-dimensional printing technology has supported the researchers and surgeons to apply the bone tissue engineering to the oromandibular reconstruction. In this study, poly caprolactone/beta tricalcium phosphate (PCL/β-TCP) scaffolds were fabricated by multi-head depositi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61944-w

    authors: Lee S,Choi D,Shim JH,Nam W

    更新日期:2020-03-18 00:00:00

  • Phantom vortices: hidden angular momentum in ultracold dilute Bose-Einstein condensates.

    abstract::Vortices are essential to angular momentum in quantum systems such as ultracold atomic gases. The existence of quantized vorticity in bosonic systems stimulated the development of the Gross-Pitaevskii mean-field approximation. However, the true dynamics of angular momentum in finite, interacting many-body systems like...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40122

    authors: Weiner SE,Tsatsos MC,Cederbaum LS,Lode AU

    更新日期:2017-01-16 00:00:00

  • Sex Ratio Elasticity Influences the Selection of Sex Ratio Strategy.

    abstract::There are three sex ratio strategies (SRS) in nature-male-biased sex ratio, female-biased sex ratio and, equal sex ratio. It was R. A. Fisher who first explained why most species in nature display a sex ratio of ½. Consequent SRS theories such as Hamilton's local mate competition (LMC) and Clark's local resource compe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39807

    authors: Wang Y,Wang R,Li Y,Sam Ma Z

    更新日期:2016-12-23 00:00:00

  • Scaffold-Hopping from Synthetic Drugs by Holistic Molecular Representation.

    abstract::The discovery of novel ligand chemotypes allows to explore uncharted regions in chemical space, thereby potentially improving synthetic accessibility, potency, and the drug-likeness of molecules. Here, we demonstrate the scaffold-hopping ability of the new Weighted Holistic Atom Localization and Entity Shape (WHALES) ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34677-0

    authors: Grisoni F,Merk D,Byrne R,Schneider G

    更新日期:2018-11-07 00:00:00

  • Vinculin Force Sensor Detects Tumor-Osteocyte Interactions.

    abstract::This study utilized a Förster resonance energy transfer (FRET)-based molecular tension sensor and live cell imaging to evaluate the effect of osteocytes, a mechanosensitive bone cell, on the migratory behavior of tumor cells. Two cell lines derived from MDA-MB-231 breast cancer cells were transfected with the vinculin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42132-x

    authors: Li F,Chen A,Reeser A,Wang Y,Fan Y,Liu S,Zhao X,Prakash R,Kota D,Li BY,Yokota H,Liu J

    更新日期:2019-04-04 00:00:00

  • The effect of surface area on the properties of shape-stabilized phase change material prepared using palm kernel shell activated carbon.

    abstract::The effect of the surface area of palm kernel shell activated carbon (PKSAC) on the properties of n-octadecane-encapsulated shape stabilized phase change material (SSPCM) for thermal energy storage (TES) application were studied. Various surface areas of the PKSAC were prepared using different amounts of H3PO4 treatme...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72019-1

    authors: Nicholas AF,Hussein MZ,Zainal Z,Khadiran T

    更新日期:2020-09-14 00:00:00

  • Low-frequency ultrasound-induced VEGF suppression and synergy with dendritic cell-mediated anti-tumor immunity in murine prostate cancer cells in vitro.

    abstract::High tumor vascular endothelial growth factor (VEGF) levels are associated with poor treatment outcomes in prostate cancer (PCa), and immune deficiency in the PCa microenvironment, especially suppression of dendritic cell (DC) proliferation, has been confirmed. In this study, we (1) investigated whether VEGF participa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06242-8

    authors: Zhang W,Shou WD,Xu YJ,Bai WK,Hu B

    更新日期:2017-07-18 00:00:00

  • Role of the Pinning Points in epitaxial Graphene Moiré Superstructures on the Pt(111) Surface.

    abstract::The intrinsic atomic mechanisms responsible for electronic doping of epitaxial graphene Moirés on transition metal surfaces is still an open issue. To better understand this process we have carried out a first-principles full characterization of the most representative Moiré superstructures observed on the Gr/Pt(111) ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20354

    authors: Martínez JI,Merino P,Pinardi AL,Gonzalo OI,López MF,Méndez J,Martín-Gago JA

    更新日期:2016-02-08 00:00:00

  • Designation of highly efficient catalysts for one pot conversion of glycerol to lactic acid.

    abstract::Production of lactic acid from glycerol is a cascade catalytic procedure using multifunctional catalysts combined with oxidative and acidic catalytic sites. Therefore, a series of silver-exchanged phosphomolybdic acid catalysts (AgxH3-xPMo12O40, x = 1 ~ 3, abbreviated as AgxPMo) was designed and applied in glycerol ox...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29840

    authors: Tao M,Dan Zhang,Guan H,Huang G,Wang X

    更新日期:2016-07-19 00:00:00

  • Long-term bowel dysfunction following low anterior resection.

    abstract::Study aimed to assess long-term bowel function in patients who underwent low anterior resection for cancer five and more years ago. Patients who underwent low anterior resection for rectal cancer from 2010 to 2015 at National Cancer Institute were prospectively included in our study. They were interviewed using low an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68900-8

    authors: Dulskas A,Kavaliauskas P,Pilipavicius L,Jodinskas M,Mikalonis M,Samalavicius NE

    更新日期:2020-07-17 00:00:00

  • Regioisomer-independent quantification of fatty acid oxidation products by HPLC-ESI-MS/MS analysis of sodium adducts.

    abstract::Despite growing acknowledgement of the role of oxidized fatty acids (oxFA) as cellular signaling molecules and in the pathogenesis of disease, developing methods to measure these species in biological samples has proven challenging. Here we describe a novel method utilizing HPLC-ESI-MS/MS to identify and quantify mult...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47693-5

    authors: Ahern KW,Serbulea V,Wingrove CL,Palas ZT,Leitinger N,Harris TE

    更新日期:2019-08-01 00:00:00

  • Hydrogen segregation and its roles in structural stability and metallization: silane under pressure.

    abstract::We present results from first-principles calculations on silane (SiH4) under pressure. We find that a three dimensional P-3 structure becomes the most stable phase above 241 GPa. A prominent structural feature, which separates the P-3 structure from previously observed/predicted SiH4 structures, is that a fraction of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13039

    authors: Cui W,Shi J,Liu H,Yao Y,Wang H,Iitaka T,Ma Y

    更新日期:2015-08-12 00:00:00