Comparative gene-expression profiling of the large cell variant of gastrointestinal marginal-zone B-cell lymphoma.

Abstract:

:Gastrointestinal (g.i.) large cell lymphoma is currently regarded as diffuse large B-cell lymphoma (DLBCL) despite a more favorable clinical outcome compared to other DLBCL. Cluster analyses on a transcriptome signature of NF-κB target genes of 30 g.i. marginal zone B-cell lymphomas (MZBL; 8 g.i. MZBL, 22 large cell MZBL - among them 9 with coexisting small cell component) and 6 DLBCL (3 activated B-cell like (ABC), 3 germinal center-like (GCB)) reveals a distinct pattern. The distinctiveness of large cell MZBL samples is further confirmed by a cohort of 270 available B-cell lymphoma and B-cell in silico profiles. Of the NF-κB genes analyzed, c-REL was overexpressed in g.i. MZBL. c-REL amplification was limited to 6/22 large cell MZBL including the large cell component of 2/9 composite small cell/large cell lymphomas, and c-Rel protein expression was found in the large cell compartment of composite lymphomas. Classification experiments on DLBCL and large cell MZBL profiles support the concept that the large cell MZBL is a distinct type of B-cell lymphoma.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Barth TFE,Kraus JM,Lausser L,Flossbach L,Schulte L,Holzmann K,Kestler HA,Möller P

doi

10.1038/s41598-017-05116-3

subject

Has Abstract

pub_date

2017-07-20 00:00:00

pages

5963

issue

1

issn

2045-2322

pii

10.1038/s41598-017-05116-3

journal_volume

7

pub_type

杂志文章
  • A potential adjuvant chemotherapeutics, 18β-glycyrrhetinic acid, inhibits renal tubular epithelial cells apoptosis via enhancing BMP-7 epigenetically through targeting HDAC2.

    abstract::Cisplatin, a highly effective and widely used chemotherapeutic agent, has a major limitation for its nephrotoxicity. We recently identified a novel strategy for attenuating its nephrotoxicity in chemotherapy by an effective adjuvant via epigenetic modification through targeting HDAC2. Molecular docking and SPR assay f...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25396

    authors: Ma T,Huang C,Meng X,Li X,Zhang Y,Ji S,Li J,Ye M,Liang H

    更新日期:2016-05-05 00:00:00

  • Evidence of a cubic iron sub-lattice in t-CuFe2O4 demonstrated by X-ray Absorption Fine Structure.

    abstract::Copper ferrite, belonging to the wide and technologically relevant class of spinel ferrites, was grown in the form of t-CuFe2O4 nanocrystals within a porous matrix of silica in the form of either an aerogel or a xerogel, and compared to a bulk sample. Extended X-ray absorption fine structure (EXAFS) spectroscopy revea...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-19045-8

    authors: Caddeo F,Loche D,Casula MF,Corrias A

    更新日期:2018-01-15 00:00:00

  • Demonstration of the potential of environmental DNA as a tool for the detection of avian species.

    abstract::Birds play unique functional roles in the maintenance of ecosystems, such as pollination and seed dispersal, and thus monitoring bird species diversity is a first step towards avoiding undesirable consequences of anthropogenic impacts on bird communities. In the present study, we hypothesized that birds, regardless of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22817-5

    authors: Ushio M,Murata K,Sado T,Nishiumi I,Takeshita M,Iwasaki W,Miya M

    更新日期:2018-03-14 00:00:00

  • The first draft reference genome of the American mink (Neovison vison).

    abstract::The American mink (Neovison vison) is a semiaquatic species of mustelid native to North America. It's an important animal for the fur industry. Many efforts have been made to locate genes influencing fur quality and color, but this search has been impeded by the lack of a reference genome. Here we present the first dr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15169-z

    authors: Cai Z,Petersen B,Sahana G,Madsen LB,Larsen K,Thomsen B,Bendixen C,Lund MS,Guldbrandtsen B,Panitz F

    更新日期:2017-11-06 00:00:00

  • Changes in motor behavior, neuropathology, and gut microbiota of a Batten disease mouse model following administration of acidified drinking water.

    abstract::CLN3 mutations cause the fatal neurodegenerative disorder, CLN3 Batten disease. The Cln3-/- mouse model displays characteristic features of the human disease including motor deficits. When mice received acidified drinking water (pH 2.5-2.9) instead of normal tap water (pH 8.4) for several generations, the motor skills...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51488-z

    authors: Johnson TB,Langin LM,Zhao J,Weimer JM,Pearce DA,Kovács AD

    更新日期:2019-10-18 00:00:00

  • Functional spectroscopic imaging reveals specificity of glutamate response in mouse brain to peripheral sensory stimulation.

    abstract::Non-invasive investigation of physiological changes and metabolic events associated with brain activity in mice constitutes a major challenge. Conventionally, fMRI assesses neuronal activity by evaluating activity-evoked local changes in blood oxygenation levels (BOLD). In isoflurane-anaethetized mice, however, we fou...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46477-1

    authors: Seuwen A,Schroeter A,Grandjean J,Schlegel F,Rudin M

    更新日期:2019-07-22 00:00:00

  • CaV1.3 L-type Ca2+ channel contributes to the heartbeat by generating a dihydropyridine-sensitive persistent Na+ current.

    abstract::The spontaneous activity of sinoatrial node (SAN) pacemaker cells is generated by a functional interplay between the activity of ionic currents of the plasma membrane and intracellular Ca2+ dynamics. The molecular correlate of a dihydropyridine (DHP)-sensitive sustained inward Na+ current (I st), a key player in SAN a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08191-8

    authors: Toyoda F,Mesirca P,Dubel S,Ding WG,Striessnig J,Mangoni ME,Matsuura H

    更新日期:2017-08-11 00:00:00

  • Creating a switchable optical cavity with controllable quantum-state mapping between two modes.

    abstract::We describe how an ensemble of four-level atoms in the diamond-type configuration can be applied to create a fully controllable effective coupling between two cavity modes. The diamond-type configuration allows one to use a bimodal cavity that supports modes of different frequencies or different circular polarisations...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32989-9

    authors: Chimczak G,Bartkiewicz K,Ficek Z,Tanaś R

    更新日期:2018-10-03 00:00:00

  • The pervasiveness and policy consequences of medical folk wisdom in the U.S.

    abstract::Medical folk wisdom (MFW) refers to widely held, but factually inaccurate, beliefs about disease, immunity, pregnancy, and other medically-relevant topics. Examples include the idea that fasting when feverish ("starving a fever") can increase the pace of recovery, or that showering after sex can prevent pregnancy. The...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67744-6

    authors: Motta M,Callaghan T

    更新日期:2020-07-01 00:00:00

  • Overexpression of VIRE2-INTERACTING PROTEIN2 in Arabidopsis regulates genes involved in Agrobacterium-mediated plant transformation and abiotic stresses.

    abstract::Arabidopsis VIRE2-INTERACTING PROTEIN2 (VIP2) was previously described as a protein with a NOT domain, and Arabidopsis vip2 mutants are recalcitrant to Agrobacterium-mediated root transformation. Here we show that VIP2 is a transcription regulator and the C-terminal NOT2 domain of VIP2 interacts with VirE2. Interestin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49590-3

    authors: Raman V,Anand A,Vasudevan B,Morsy MR,Pant BD,Lee HK,Tang Y,Mysore KS

    更新日期:2019-09-18 00:00:00

  • Harnessing the microbiomes of Brassica vegetables for health issues.

    abstract::Plant health is strongly connected with plants´ microbiome. In case of raw-eaten plants, the microbiome can also affect human health. To study potential impacts on health issues of both hosts, the microbiome composition of seven different Brassica vegetables, originating from different food processing pathways, was an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17949-z

    authors: Wassermann B,Rybakova D,Müller C,Berg G

    更新日期:2017-12-15 00:00:00

  • Systematic discovery about NIR spectral assignment from chemical structural property to natural chemical compounds.

    abstract::Spectra-structure interrelationship is still the weakness of NIR spectral assignment. In this paper, a comprehensive investigation from chemical structural property to natural chemical compounds was carried out for NIR spectral assignment. Surprisingly, we discovered that NIR absorption frequency of the skeleton struc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45945-y

    authors: Ma L,Peng Y,Pei Y,Zeng J,Shen H,Cao J,Qiao Y,Wu Z

    更新日期:2019-07-01 00:00:00

  • Polymicrobial Infections In Brain Tissue From Alzheimer's Disease Patients.

    abstract::Several studies have advanced the idea that the etiology of Alzheimer's disease (AD) could be microbial in origin. In the present study, we tested the possibility that polymicrobial infections exist in tissue from the entorhinal cortex/hippocampus region of patients with AD using immunohistochemistry (confocal laser s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05903-y

    authors: Pisa D,Alonso R,Fernández-Fernández AM,Rábano A,Carrasco L

    更新日期:2017-07-17 00:00:00

  • Infrared laser pulse triggers increased singlet oxygen production in tumour cells.

    abstract::Photodynamic therapy (PDT) is a technique developed to treat the ever-increasing global incidence of cancer. This technique utilises singlet oxygen ((1)O2) generation via a laser excited photosensitiser (PS) to kill cancer cells. However, prolonged sensitivity to intensive light (6-8 weeks for lung cancer), relatively...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03484

    authors: Sokolovski SG,Zolotovskaya SA,Goltsov A,Pourreyron C,South AP,Rafailov EU

    更新日期:2013-12-12 00:00:00

  • The SRGAP2 SNPs, their haplotypes and G × E interactions on serum lipid traits.

    abstract::Maonan nationality is a relatively conservative and isolated minority in China. Little is known about the association of the Slit-Robo Rho GTPase activating protein 2 gene (SRGAP2) single nucleotide polymorphisms (SNPs) and serum lipid levels in the Chinese populations. This study was performed to clarify the associat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10950-6

    authors: Miao L,Yin RX,Wu JZ,Yang S,Lin WX,Pan SL

    更新日期:2017-09-14 00:00:00

  • A Comprehensive Biophysical Analysis of the Effect of DNA Binding Drugs on Protamine-induced DNA Condensation.

    abstract::DNA condensation is a ubiquitous phenomenon in biology, yet the physical basis for it has remained elusive. Here, we have explored the mechanism of DNA condensation through the protamine-DNA interaction, and by examining on it the influence of DNA binding drugs. We observed that the DNA condensation is accompanied by ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41975-8

    authors: Gupta S,Tiwari N,Munde M

    更新日期:2019-04-10 00:00:00

  • Differential effects of spinal motor neuron-derived and skeletal muscle-derived Rspo2 on acetylcholine receptor clustering at the neuromuscular junction.

    abstract::We recently reported that R-spondin 2 (Rspo2), a secreted activator of Wnt/β-catenin signaling, promotes acetylcholine receptor (AChR) clustering and neuromuscular junction (NMJ) formation via its receptor, Lgr5. Rspo2 is expressed highly in spinal motor neurons (SMNs) and marginally in the skeletal muscle, but the or...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31949-7

    authors: Li J,Ito M,Ohkawara B,Masuda A,Ohno K

    更新日期:2018-09-11 00:00:00

  • Cell type specific gene expression profiling reveals a role for complement component C3 in neutrophil responses to tissue damage.

    abstract::Tissue damage induces rapid recruitment of leukocytes and changes in the transcriptional landscape that influence wound healing. However, the cell-type specific transcriptional changes that influence leukocyte function and tissue repair have not been well characterized. Here, we employed translating ribosome affinity ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72750-9

    authors: Houseright RA,Rosowski EE,Lam PY,Tauzin SJM,Mulvaney O,Dewey CN,Huttenlocher A

    更新日期:2020-09-24 00:00:00

  • Increased sensitivity of BRCA defective triple negative breast tumors to plumbagin through induction of DNA Double Strand Breaks (DSB).

    abstract::We have earlier shown that Plumbagin (PB) can induce selective cytotoxicity to BRCA1 defective ovarian cancer cells; however, the effect of this molecule in BRCA1 mutated breast cancers has not been analyzed yet. Here, we report that reactive oxygen species (ROS) induced by PB resulted in DNA DSB and activates downstr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep26631

    authors: Nair RS,Kumar JM,Jose J,Somasundaram V,Hemalatha SK,Sengodan SK,Nadhan R,Anilkumar TV,Srinivas P

    更新日期:2016-05-25 00:00:00

  • Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images.

    abstract::Nuclei detection is often a critical initial step in the development of computer aided diagnosis and prognosis schemes in the context of digital pathology images. While over the last few years, a number of nuclei detection methods have been proposed, most of these approaches make idealistic assumptions about the stain...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33985

    authors: Lu C,Xu H,Xu J,Gilmore H,Mandal M,Madabhushi A

    更新日期:2016-10-03 00:00:00

  • Vibration and damping characteristics of 3D printed Kagome lattice with viscoelastic material filling.

    abstract::Constrained layer dampers (CLD) are in widespread use for passive vibration damping, in applications including aerospace structures. However, the introducing of the damping layer can reduce the stiffness of the sandwich structures. A viscoelastic material filling (VMF) is chosen to balance structural and vibrational p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27963-4

    authors: Wang R,Shang J,Li X,Luo Z,Wu W

    更新日期:2018-06-25 00:00:00

  • Polymorphic beams and Nature inspired circuits for optical current.

    abstract::Laser radiation pressure is a basis of numerous applications in science and technology such as atom cooling, particle manipulation, material processing, etc. This light force for the case of scalar beams is proportional to the intensity-weighted wavevector known as optical current. The ability to design the optical cu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35341

    authors: Rodrigo JA,Alieva T

    更新日期:2016-10-13 00:00:00

  • Risk factors of treatment failure and 30-day mortality in patients with bacteremia due to MRSA with reduced vancomycin susceptibility.

    abstract::Bacteremia caused by MRSA with reduced vancomycin susceptibility (MRSA-RVS) frequently resulted in treatment failure and mortality. The relation of bacterial factors and unfavorable outcomes remains controversial. We retrospectively reviewed clinical data of patients with bacteremia caused by MRSA with vancomycin MIC ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26277-9

    authors: Yang CC,Sy CL,Huang YC,Shie SS,Shu JC,Hsieh PH,Hsiao CH,Chen CJ

    更新日期:2018-05-18 00:00:00

  • Rapamycin attenuates pathological hypertrophy caused by an absence of trabecular formation.

    abstract::Cardiac trabeculae are mesh-like muscular structures within ventricular walls. Subtle perturbations in trabeculation are associated with many congenital heart diseases (CHDs), and complete failure to form trabeculae leads to embryonic lethality. Despite the severe consequence of an absence of trabecular formation, the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26843-1

    authors: Fleming ND,Samsa LA,Hassel D,Qian L,Liu J

    更新日期:2018-06-05 00:00:00

  • Relationship between Lipoprotein (a) and cognitive function - Results from the Berlin Aging Study II.

    abstract::It has been suggested that an age-related loss of cognitive function might be driven by atherosclerotic effects associated with altered lipid patterns. However, the relationship between Lipoprotein (a) [Lp(a)] and healthy cognitive aging has not yet been sufficiently investigated. For the current analysis we used the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66783-3

    authors: Röhr F,Bucholtz N,Toepfer S,Norman K,Spira D,Steinhagen-Thiessen E,Lill CM,Bertram L,Demuth I,Buchmann N,Düzel S

    更新日期:2020-06-30 00:00:00

  • Ultrafiltration combined with size exclusion chromatography efficiently isolates extracellular vesicles from cell culture media for compositional and functional studies.

    abstract::Appropriate isolation methods are essential for unravelling the relative contribution of extracellular vesicles (EVs) and the EV-free secretome to homeostasis and disease. We hypothesized that ultrafiltration followed by size exclusion chromatography (UF-SEC) provides well-matched concentrates of EVs and free secreted...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15717-7

    authors: Benedikter BJ,Bouwman FG,Vajen T,Heinzmann ACA,Grauls G,Mariman EC,Wouters EFM,Savelkoul PH,Lopez-Iglesias C,Koenen RR,Rohde GGU,Stassen FRM

    更新日期:2017-11-10 00:00:00

  • Developmental asymmetries in learning to adjust to cooperative and uncooperative environments.

    abstract::Learning to successfully navigate social environments is a critical developmental goal, predictive of long-term wellbeing. However, little is known about how people learn to adjust to different social environments, and how this behaviour emerges across development. Here, we use a series of economic games to assess how...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78546-1

    authors: Westhoff B,Molleman L,Viding E,van den Bos W,van Duijvenvoorde ACK

    更新日期:2020-12-10 00:00:00

  • NMR analysis reveals significant differences in the plasma metabolic profiles of Niemann Pick C1 patients, heterozygous carriers, and healthy controls.

    abstract::Niemann-Pick type C1 (NPC1) disease is a rare autosomal recessive, neurodegenerative lysosomal storage disorder, which presents with a range of clinical phenotypes and hence diagnosis remains a challenge. In view of these difficulties, the search for a novel, NPC1-specific biomarker (or set of biomarkers) is a topic o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06264-2

    authors: Probert F,Ruiz-Rodado V,Vruchte DT,Nicoli ER,Claridge TDW,Wassif CA,Farhat N,Porter FD,Platt FM,Grootveld M

    更新日期:2017-07-24 00:00:00

  • GLP-1 receptor agonist ameliorates experimental lung fibrosis.

    abstract::Idiopathic pulmonary fibrosis (IPF) is a chronic, progressive, and fatal lung disease. This disease is characterized by an excessive accumulation of extracellular matrix deposition that modify normal lung physiology. Up to date, there are not efficient therapeutic tools to fight IPF. Glucagon-like peptide-1 receptor (...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74912-1

    authors: Fandiño J,Toba L,González-Matías LC,Diz-Chaves Y,Mallo F

    更新日期:2020-10-22 00:00:00

  • Emerging methanol-tolerant AlN nanowire oxygen reduction electrocatalyst for alkaline direct methanol fuel cell.

    abstract::Replacing precious and nondurable Pt catalysts with cheap materials is a key issue for commercialization of fuel cells. In the case of oxygen reduction reaction (ORR) catalysts for direct methanol fuel cell (DMFC), the methanol tolerance is also an important concern. Here, we develop AlN nanowires with diameters of ab...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06013

    authors: Lei M,Wang J,Li JR,Wang YG,Tang HL,Wang WJ

    更新日期:2014-08-11 00:00:00