当前位置： SCI文献检索 > Scientific Reports期刊下所有文献 > Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage.

Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage.

Abstract：

:Potato (Solanum tuberosum) is an important staple crop worldwide, it has been cultivated in the Andean Altiplano under low-input farming practices at high altitudes and under harsh environment for centuries. We analyzed secondary metabolite (SM) gene diversity encoded in the potato rhizosphere microbiome during plant growth at three distinct sites located in the Andes at high altitudes by 454-pyrosequencing of non-ribosomal peptide and polyketide biosynthetic genes. Phylogenetic analysis indicated that the majority of rhizosphere SM-encoding sequences differed from previously known sequences and may have distinct ancestors. In particular, actinobacterial methyl-malonyl-CoA transferase and acyl carrier protein from Firmicutes, both involved in the synthesis of SMs, showed widespread distribution of clades which were clearly distinct from sequences deposited in public databases, and only 11% of these sequences could be linked to the production of specific classes of SMs. Although the same cultivar was analyzed, SM gene composition radically differed among plant growth stages and across sites, suggesting a distinct repertoire of SM genes that likely encode diverse SM structures. Also, great diversity of non-ribosomal peptide and polyketide biosynthetic pathways in potato-associated microbiomes in the Andean highlands may represent a rich source of novel natural products.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Aleti G,Nikolić B,Brader G,Pandey RV,Antonielli L,Pfeiffer S,Oswald A,Sessitsch A

doi

10.1038/s41598-017-02314-x

subject

Has Abstract

pub_date

2017-05-24 00:00:00

pages

2330

issue

1

issn

2045-2322

pii

10.1038/s41598-017-02314-x

journal_volume

7

pub_type

杂志文章

相关文献

Scientific Reports文献大全
  • Preparation of ZnS@In2S3 Core@shell Composite for Enhanced Photocatalytic Degradation of Gaseous o-Dichlorobenzene under Visible Light.

    abstract：:In this study, novel ZnS@In2S3 core@shell hollow nanospheres were fabricated by a facile refluxing method for the first time, and the formation mechanism of hollow structure with interior architecture was discussed based on ion-exchange Ostwald ripening. As the photocatalytic material for degradation of gaseous o-Dich...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-16732-4

    authors： Liu B,Hu X,Li X,Li Y,Chen C,Lam KH

    更新日期：2017-11-27 00:00:00

  • Recent loss of closed forests is associated with Ebola virus disease outbreaks.

    abstract：:Ebola virus disease (EVD) is a contagious, severe and often lethal form of hemorrhagic fever in humans. The association of EVD outbreaks with forest clearance has been suggested previously but many aspects remained uncharacterized. We used remote sensing techniques to investigate the association between deforestation ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-14727-9

    authors： Olivero J,Fa JE,Real R,Márquez AL,Farfán MA,Vargas JM,Gaveau D,Salim MA,Park D,Suter J,King S,Leendertz SA,Sheil D,Nasi R

    更新日期：2017-10-30 00:00:00

  • In-situ fabrication of macroporous films for dye-sensitised solar cells: formation of the scattering layer and the gelation of electrolytes.

    abstract：:Dye-sensitised solar cells (DSCs) are a promising substitute for conventional silicon solar cells. A scattering layer of submicrometer pores or particles has been widely introduced to achieve a high light-harvesting efficiency. However, many such fabrication processes require high temperatures and multiple steps to pr...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep05375

    authors： Ha SJ,Moon JH

    更新日期：2014-07-09 00:00:00

  • Loss of NMDA receptors in dopamine neurons leads to the development of affective disorder-like symptoms in mice.

    abstract：:The role of changes in dopamine neuronal activity during the development of symptoms in affective disorders remains controversial. Here, we show that inactivation of NMDA receptors on dopaminergic neurons in adult mice led to the development of affective disorder-like symptoms. The loss of NMDA receptors altered activ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep37171

    authors： Jastrzębska K,Walczak M,Cieślak PE,Szumiec Ł,Turbasa M,Engblom D,Błasiak T,Parkitna JR

    更新日期：2016-11-17 00:00:00

  • On the importance of full-dimensionality in low-energy molecular scattering calculations.

    abstract：:Scattering of H2 on CO is of great importance in astrophysics and also is a benchmark system for comparing theory to experiment. We present here a new 6-dimensional potential energy surface for the ground electronic state of H2-CO with an estimated uncertainty of about 0.6 cm(-1) in the global minimum region, several ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep28449

    authors： Faure A,Jankowski P,Stoecklin T,Szalewicz K

    更新日期：2016-06-23 00:00:00

  • Genetic characterization of cysteine-rich type-b avenin-like protein coding genes in common wheat.

    abstract：:The wheat avenin-like proteins (ALP) are considered atypical gluten constituents and have shown positive effects on dough properties revealed using a transgenic approach. However, to date the genetic architecture of ALP genes is unclear, making it impossible to be utilized in wheat breeding. In the current study, thre...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep30692

    authors： Chen XY,Cao XY,Zhang YJ,Islam S,Zhang JJ,Yang RC,Liu JJ,Li GY,Appels R,Keeble-Gagnere G,Ji WQ,He ZH,Ma WJ

    更新日期：2016-08-09 00:00:00

  • Human Defensin-5 Blocks Ethanol and Colitis-Induced Dysbiosis, Tight Junction Disruption and Inflammation in Mouse Intestine.

    abstract：:Alcohol consumption has been shown to cause dysbiosis, but the mechanism involved in it is unknown. Recurrent colitis is known to induce expression of α-defensins in the colon, but the effect of alcohol consumption on it is not known. We investigated the effect of ethanol on α-defensin expression in the small intestin...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-34263-4

    authors： Shukla PK,Meena AS,Rao V,Rao RG,Balazs L,Rao R

    更新日期：2018-11-02 00:00:00

  • A humanized anti-DLL4 antibody promotes dysfunctional angiogenesis and inhibits breast tumor growth.

    abstract：:Blockage of Delta-like 4 (DLL4)-directed Notch signaling induces excessive tip cell formation and endothelial proliferation resulting in dysfunctional angiogenesis in tumors. MMGZ01, as a murine anti-human DLL4 monoclonal antibody, specifically binds to human DLL4 and blocks Notch pathway. Here, the structure of MMGZ0...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep27985

    authors： Jia X,Wang W,Xu Z,Wang S,Wang T,Wang M,Wu M

    更新日期：2016-06-15 00:00:00

  • Differential Scanning Fluorimetry provides high throughput data on silk protein transitions.

    abstract：:Here we present a set of measurements using Differential Scanning Fluorimetry (DSF) as an inexpensive, high throughput screening method to investigate the folding of silk protein molecules as they abandon their first native melt conformation, dehydrate and denature into their final solid filament conformation. Our fir...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep05625

    authors： Vollrath F,Hawkins N,Porter D,Holland C,Boulet-Audet M

    更新日期：2014-07-09 00:00:00

  • A Highly Potent and Broadly Neutralizing H1 Influenza-Specific Human Monoclonal Antibody.

    abstract：:Influenza's propensity for antigenic drift and shift, and to elicit predominantly strain specific antibodies (Abs) leaves humanity susceptible to waves of new strains with pandemic potential for which limited or no immunity may exist. Subsequently new clinical interventions are needed. To identify hemagglutinin (HA) e...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-22307-8

    authors： Nogales A,Piepenbrink MS,Wang J,Ortega S,Basu M,Fucile CF,Treanor JJ,Rosenberg AF,Zand MS,Keefer MC,Martinez-Sobrido L,Kobie JJ

    更新日期：2018-03-12 00:00:00

  • Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens.

    abstract：:Agrobacterium pathogens of octopine- and nopaline-types force host plants to produce either octopine or nopaline compounds, which they use as nutrients. Two Agrobacterium ABC-transporters and their cognate periplasmic binding proteins (PBPs) OccJ and NocT import octopine and nopaline/octopine, respectively. Here, we s...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-18243-8

    authors： Vigouroux A,El Sahili A,Lang J,Aumont-Nicaise M,Dessaux Y,Faure D,Moréra S

    更新日期：2017-12-21 00:00:00

  • Impact of blood urea nitrogen to creatinine ratio on mortality and morbidity in hemodialysis patients: The Q-Cohort Study.

    abstract：:The association between blood urea nitrogen to creatinine ratio (UCR) and survival is uncertain in hemodialysis patients. We examined the influence of UCR on mortality and morbidity in hemodialysis patients. A total of 3,401 hemodialysis patients were prospectively followed for 4 years. The association between UCR wit...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-14205-2

    authors： Tanaka S,Ninomiya T,Taniguchi M,Tokumoto M,Masutani K,Ooboshi H,Kitazono T,Tsuruya K

    更新日期：2017-11-02 00:00:00

  • Divergence of stable isotopes in tap water across China.

    abstract：:Stable isotopes in water (e.g., δ2H and δ18O) are important indicators of hydrological and ecological patterns and processes. Tap water can reflect integrated features of regional hydrological processes and human activities. China is a large country with significant meteorological and geographical variations. This rep...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep43653

    authors： Zhao S,Hu H,Tian F,Tie Q,Wang L,Liu Y,Shi C

    更新日期：2017-03-02 00:00:00

  • A variant of the castor zinc finger 1 (CASZ1) gene is differentially associated with the clinical classification of chronic venous disease.

    abstract：:Recent reports have suggested a reproducible association between the rs11121615 SNP, located within an intron of the castor zinc finger 1 (CASZ1) gene, and varicose veins. This study aimed to determine if this variant is also differentially associated with the various clinical classifications of chronic venous disease...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-50586-2

    authors： Jones GT,Marsman J,Pardo LM,Nijsten T,De Maeseneer M,Phillips V,Lynch-Sutherland C,Horsfield J,Krysa J,van Rij AM

    更新日期：2019-09-30 00:00:00

  • An fMRI-compatible force measurement system for the evaluation of the neural correlates of step initiation.

    abstract：:Knowledge of brain correlates of postural control is limited by the technical difficulties in performing controlled experiments with currently available neuroimaging methods. Here we present a system that allows the measurement of anticipatory postural adjustment of human legs to be synchronized with the acquisition o...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep43088

    authors： de Lima-Pardini AC,de Azevedo Neto RM,Coelho DB,Boffino CC,Shergill SS,de Oliveira Souza C,Brant R,Barbosa ER,Cardoso EF,Teixeira LA,Cohen RG,Horak FB,Amaro E Jr

    更新日期：2017-02-23 00:00:00

  • Exploitation of the chick embryo chorioallantoic membrane (CAM) as a platform for anti-metastatic drug testing.

    abstract：:The establishment of clinically relevant models for tumor metastasis and drug testing is a major challenge in cancer research. Here we report a physiologically relevant assay enabling quantitative analysis of metastatic capacity of tumor cells following implantation into the chorioallantoic membrane (CAM). Engraftment...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-73632-w

    authors： Pawlikowska P,Tayoun T,Oulhen M,Faugeroux V,Rouffiac V,Aberlenc A,Pommier AL,Honore A,Marty V,Bawa O,Lacroix L,Scoazec JY,Chauchereau A,Laplace-Builhe C,Farace F

    更新日期：2020-10-09 00:00:00

  • Significant plastic accumulation on the Cocos (Keeling) Islands, Australia.

    abstract：:For over 60 years, our oceans have been a reservoir for exponentially increasing amounts of plastic waste. Plastic has been documented at all levels of the marine food web, from the deepest oceanic trenches to the most far-flung beaches. Here, we present data on the presence of significant quantities of plastic on the...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-43375-4

    authors： Lavers JL,Dicks L,Dicks MR,Finger A

    更新日期：2019-05-16 00:00:00

  • Disruption of NOTCH signaling by a small molecule inhibitor of the transcription factor RBPJ.

    abstract：:NOTCH plays a pivotal role during normal development and in congenital disorders and cancer. γ-secretase inhibitors are commonly used to probe NOTCH function, but also block processing of numerous other proteins. We discovered a new class of small molecule inhibitor that disrupts the interaction between NOTCH and RBPJ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-46948-5

    authors： Hurtado C,Safarova A,Smith M,Chung R,Bruyneel AAN,Gomez-Galeno J,Oswald F,Larson CJ,Cashman JR,Ruiz-Lozano P,Janiak P,Suzuki T,Mercola M

    更新日期：2019-07-25 00:00:00

  • Features of the cervicovaginal microenvironment drive cancer biomarker signatures in patients across cervical carcinogenesis.

    abstract：:Persistent human papillomavirus (HPV) infection is the vital factor driving cervical carcinogenesis; however, other features of the local cervicovaginal microenvironment (CVM) may play a critical role in development of precancerous cervical dysplasia and progression to invasive cervical carcinoma (ICC). Here we invest...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-43849-5

    authors： Łaniewski P,Cui H,Roe DJ,Barnes D,Goulder A,Monk BJ,Greenspan DL,Chase DM,Herbst-Kralovetz MM

    更新日期：2019-05-14 00:00:00

  • Liver-specific Repin1 deficiency impairs transient hepatic steatosis in liver regeneration.

    abstract：:Transient hepatic steatosis upon liver resection supposes functional relationships between lipid metabolism and liver regeneration. Repin1 has been suggested as candidate gene for obesity and dyslipidemia by regulating key genes of lipid metabolism and lipid storage. Herein, we characterized the regenerative potential...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-35325-3

    authors： Abshagen K,Degenhardt B,Liebig M,Wendt A,Genz B,Schaeper U,Stumvoll M,Hofmann U,Frank M,Vollmar B,Klöting N

    更新日期：2018-11-15 00:00:00

  • A Guide to Design Functional Molecular Liquids with Tailorable Properties using Pyrene-Fluorescence as a Probe.

    abstract：:Solvent-free, nonvolatile, room-temperature alkylated-π functional molecular liquids (FMLs) are rapidly emerging as a new generation of fluid matter. However, precision design to tune their physicochemical properties remains a serious challenge because the properties are governed by subtle π-π interactions among funct...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-03584-1

    authors： Lu F,Takaya T,Iwata K,Kawamura I,Saeki A,Ishii M,Nagura K,Nakanishi T

    更新日期：2017-06-13 00:00:00

  • Enhancing radiosensitization in EphB4 receptor-expressing Head and Neck Squamous Cell Carcinomas.

    abstract：:Members of the Eph family of receptor tyrosine kinases have been implicated in a wide array of human cancers. The EphB4 receptor is ubiquitously expressed in head and neck squamous cell carcinoma (HNSCC) and has been shown to impart tumorigenic and invasive characteristics to these cancers. In this study, we investiga...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep38792

    authors： Bhatia S,Hirsch K,Sharma J,Oweida A,Griego A,Keysar S,Jimeno A,Raben D,Krasnoperov V,Gill PS,Pasquale EB,Wang XJ,Karam SD

    更新日期：2016-12-12 00:00:00

  • Appropriate usage of food thickening agents to prevent non-disintegration of magnesium oxide tablets.

    abstract：:Food thickening agents are used to aid the administration of medicine to elderly patients with dysphagia. Magnesium oxide tablets are sometimes administered with food thickening agents. Non-disintegration and disintegration delay of these tablets in the body are problems associated with food thickening agent use. Howe...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-73135-8

    authors： Matsuo T,Sato A,Kudo K,Sadzuka Y,Tomita T

    更新日期：2020-09-30 00:00:00

  • Thermal display glove for interacting with virtual reality.

    abstract：:Thermal perception is essential for the survival and daily activities of people. Thus, it is desirable to realize thermal feedback stimulation for improving the sense of realism in virtual reality (VR) for users. For thermal stimulus, conventional systems utilize liquid circulation with bulky external sources or therm...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-68362-y

    authors： Kim SW,Kim SH,Kim CS,Yi K,Kim JS,Cho BJ,Cha Y

    更新日期：2020-07-09 00:00:00

  • Rapid and Precise Semi-Automatic Axon Quantification in Human Peripheral Nerves.

    abstract：:We developed a time-efficient semi-automated axon quantification method using freeware in human cranial nerve sections stained with paraphenylenediamine (PPD). It was used to analyze a total of 1238 facial and masseteric nerve biopsies. The technique was validated by comparing manual and semi-automated quantification ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-58917-4

    authors： Engelmann S,Ruewe M,Geis S,Taeger CD,Kehrer M,Tamm ER,Bleys RLAW,Zeman F,Prantl L,Kehrer A

    更新日期：2020-02-06 00:00:00

  • Insights into the structures and electronic properties of Cun+1μ and CunS μ (n = 1-12; μ = 0, ±1) clusters.

    abstract：ABSTARCT:The stability and reactivity of clusters are closely related to their valence electronic configuration. Doping is a most efficient method to modify the electronic configuration and properties of a cluster. Considering that Cu and S posses one and six valence electrons, respectively, the S doped Cu clusters wit...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-01444-6

    authors： Li CG,Shen ZG,Hu YF,Tang YN,Chen WG,Ren BZ

    更新日期：2017-05-02 00:00:00

  • Gradient-Hierarchic-Aligned Porosity SiOC Ceramics.

    abstract：:This work describes a simple technique to produce porous ceramics with aligned porosity having very high permeability and specific surface area. SiOC-based compositions were processed from blends of three types of preceramic polymer and a catalyst, followed by curing and pyrolysis. The heating applied from the bottom ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep41049

    authors： Vakifahmetoglu C,Zeydanli D,Innocentini MD,Ribeiro FD,Lasso PR,Soraru GD

    更新日期：2017-01-20 00:00:00

  • Dissection of Pharmacological Mechanism of Chinese Herbal Medicine Yihuo Huatan Formula on Chronic Obstructive Pulmonary Disease: A Systems Pharmacology-Based Study.

    abstract：:Chronic obstructive pulmonary disease (COPD) is one of the most common respiratory diseases. Yihuo Huatan Formula (YHF), as a proven Chinese Herbal Medicine (CHM), has been verified to be effective in the treatment of stable COPD through years' of practice. Nevertheless, its working mechanism is still unclear. We soug...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-50064-9

    authors： Zhang XW,Liu W,Jiang HL,Mao B

    更新日期：2019-09-17 00:00:00

  • A general-purpose Monte Carlo particle transport code based on inverse transform sampling for radiotherapy dose calculation.

    abstract：:The Monte Carlo (MC) method is widely used to solve various problems in radiotherapy. There has been an impetus to accelerate MC simulation on GPUs whereas thread divergence remains a major issue for MC codes based on acceptance-rejection sampling. Inverse transform sampling has the potential to eliminate thread diver...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-66844-7

    authors： Liang Y,Muhammad W,Hart GR,Nartowt BJ,Chen ZJ,Yu JB,Roberts KB,Duncan JS,Deng J

    更新日期：2020-06-17 00:00:00

  • Whole Chromosome Instability induces senescence and promotes SASP.

    abstract：:Age-related accumulation of ploidy changes is associated with decreased expression of genes controlling chromosome segregation and cohesin functions. To determine the consequences of whole chromosome instability (W-CIN) we down-regulated the spindle assembly checkpoint component BUB1 and the mitotic cohesin SMC1A, and...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep35218

    authors： Andriani GA,Almeida VP,Faggioli F,Mauro M,Tsai WL,Santambrogio L,Maslov A,Gadina M,Campisi J,Vijg J,Montagna C

    更新日期：2016-10-12 00:00:00