Differential responses of marine, mesohaline and oligohaline bacterial communities to the addition of terrigenous carbon.

abstract：:The complex ecology of free-living amoebae (FLA) and their role in spreading pathogenic microorganisms through water systems have recently raised considerable interest. In this study, we investigated the presence of FLA and amoebae-resisting bacteria (ARB) at various stages of a drinking water plant fed with river wat...

journal_title：Environmental microbiology

authors： Thomas V,Loret JF,Jousset M,Greub G

更新日期：2008-10-01 00:00:00

abstract：:Exopolysaccharide is a critical biofilm matrix component, yet little is known about how the synthesis of multiple exopolysaccharides is regulated. Pseudomonas aeruginosa can produce several biofilm matrix exopolysaccharides that include alginate, Psl and Pel. Here we demonstrated that AlgC, a key enzyme that provides ...

journal_title：Environmental microbiology

authors： Ma L,Wang J,Wang S,Anderson EM,Lam JS,Parsek MR,Wozniak DJ

更新日期：2012-08-01 00:00:00

abstract：:Many bacterial genes and virulence factors are regulated by interbacterial and/or host-parasite chemical signals. We demonstrate that toxin production by a free-living freshwater cyanobacterium is regulated in part by the presence of extracellular products of a eukaryotic green alga. In growth experiments, extracellul...

journal_title：Environmental microbiology

authors： Kearns KD,Hunter MD

更新日期：2000-06-01 00:00:00

abstract：:Symbiotic association is universal in nature, and an array of symbionts play a crucial part in host life history. Aphids and their diverse symbionts have become a good model system to study insect-symbiont interactions. Previous symbiotic diversity surveys have mainly focused on a few aphid clades, and the relative im...

journal_title：Environmental microbiology

authors： Qin M,Chen J,Xu S,Jiang L,Qiao G

更新日期：2021-01-07 00:00:00

abstract：:In aquatic ecosystems, microplastics are a relatively new anthropogenic substrate that can readily be colonized by biofilm-forming organisms. To examine the effects of substrate type on microbial community assembly, we exposed ambient Baltic bacterioplankton to plastic substrates commonly found in marine environments ...

journal_title：Environmental microbiology

authors： Ogonowski M,Motiei A,Ininbergs K,Hell E,Gerdes Z,Udekwu KI,Bacsik Z,Gorokhova E

更新日期：2018-08-01 00:00:00

abstract：:Previous studies have shown that the rate of settlement of zoospores of the green alga Enteromorpha is stimulated by mixed microbial biofilms and that the number of zoospores settling is positively correlated with the number of bacteria in the biofilm. In the present study the specificity of this relationship has been...

journal_title：Environmental microbiology

authors： Patel P,Callow ME,Joint I,Callow JA

更新日期：2003-05-01 00:00:00

abstract：:The presence of two insertion sequences, IS406 and IS407, was tested by polymerase chain reaction (PCR) amplification in 25 strains representing 15 Burkholderia species and the close relative Ralstonia pickettii. A total of 50% of the 25 strains contained at least one of the two insertion sequences (ISs) and a statist...

journal_title：Environmental microbiology

authors： Miché L,Faure D,Blot M,Cabanne-Giuli E,Balandreau J

更新日期：2001-12-01 00:00:00

abstract：:Nosema ceranae is currently one of the major pathogens of honeybees, related to the worldwide colony losses phenomenon. The genotyping of strains based on ribosomal DNA (rDNA) can be misleading if the repeated units are not identical. The analysis of cloned rDNA fragments containing the intergenic spacer (IGS) and par...

journal_title：Environmental microbiology

authors： Sagastume S,Del Águila C,Martín-Hernández R,Higes M,Henriques-Gil N

更新日期：2011-01-01 00:00:00

abstract：:The aromatic hydrocarbon naphthalene, which occurs in coal and oil, can be degraded by aerobic or anaerobic microorganisms. A wide-spread electron acceptor for the latter is sulfate. Evidence for in situ naphthalene degradation stems in particular from the detection of 2-naphthoate and [5,6,7,8]-tetrahydro-2-naphthoat...

journal_title：Environmental microbiology

authors： Chen G,Widdel F,Musat F

更新日期：2020-09-01 00:00:00

abstract：:The biology of biofilm in deep-sea environments is barely being explored. Here, biofilms were developed at the brine pool (characterized by limited carbon sources) and the normal bottom water adjacent to Thuwal cold seeps. Comparative metagenomics based on 50 Gb datasets identified polysaccharide degradation, nitrate ...

journal_title：Environmental microbiology

authors： Zhang W,Wang Y,Bougouffa S,Tian R,Cao H,Li Y,Cai L,Wong YH,Zhang G,Zhou G,Zhang X,Bajic VB,Al-Suwailem A,Qian PY

更新日期：2015-10-01 00:00:00

abstract：:Lignocellulose biodegradation, an essential step in terrestrial carbon cycling, generally involves removal of the recalcitrant lignin barrier that otherwise prevents infiltration by microbial polysaccharide hydrolases. However, fungi that cause brown rot of wood, a major route for biomass recycling in coniferous fores...

journal_title：Environmental microbiology

authors： Yelle DJ,Wei D,Ralph J,Hammel KE

更新日期：2011-04-01 00:00:00

abstract：:Chemolithoautotrophic nitrite oxidizers of the genus Nitrospira are a monophyletic but diverse group of organisms, are widely distributed in many natural habitats, and play a key role in nitrogen elimination during biological wastewater treatment. Phylogenetic analyses of cloned 16S rRNA genes and fluorescence in situ...

journal_title：Environmental microbiology

authors： Maixner F,Noguera DR,Anneser B,Stoecker K,Wegl G,Wagner M,Daims H

更新日期：2006-08-01 00:00:00

abstract：:Obligate acidophilic members of the thaumarchaeotal genus Candidatus Nitrosotalea play an important role in nitrification in acidic soils, but their evolutionary and physiological adaptations to acidic environments are still poorly understood, with only a single member of this genus (Ca. N. devanaterra) having its gen...

journal_title：Environmental microbiology

authors： Herbold CW,Lehtovirta-Morley LE,Jung MY,Jehmlich N,Hausmann B,Han P,Loy A,Pester M,Sayavedra-Soto LA,Rhee SK,Prosser JI,Nicol GW,Wagner M,Gubry-Rangin C

更新日期：2017-12-01 00:00:00

abstract：:Deciphering the complex interconnecting bacterial responses to the presence of aromatic compounds is required to gain an integrated understanding of how aromatic catabolic processes function in relation to their genome and environmental context. In addition to the properties of the catabolic enzymes themselves, regula...

journal_title：Environmental microbiology

authors： Shingler V

更新日期：2003-12-01 00:00:00

abstract：:We investigated the distribution of chloropigments in a small meromictic lake, Lake Kaiike, south-west Japan. In the water-column, concentrations of Chl a related to cyanobacteria, BChl a related to purple sulphur bacteria, and three types of BChl e homologues (BChls e1, e2 and e3) related to brown-coloured green sulp...

journal_title：Environmental microbiology

authors： Nakajima Y,Okada H,Oguri K,Suga H,Kitazato H,Koizumi Y,Fukui M,Ohkouchi N

更新日期：2003-11-01 00:00:00

abstract：:The ability of the product of a desired reaction to activate a bacterial transcriptional regulator was exploited to develop genetic traps that render the catalytic activity born by a DNA clone into a selectable/scorable phenotype. We established this strategy with a system to expose the activity of dehydrochlorinases ...

journal_title：Environmental microbiology

authors： Mohn WW,Garmendia J,Galvao TC,de Lorenzo V

更新日期：2006-03-01 00:00:00

abstract：:Halogenated organic compounds, also termed organohalogens, were initially considered to be of almost exclusively anthropogenic origin. However, over 5000 naturally synthesized organohalogens are known today. This has also fuelled the hypothesis that the natural and ancient origin of organohalogens could have primed de...

journal_title：Environmental microbiology

authors： Atashgahi S,Häggblom MM,Smidt H

更新日期：2018-03-01 00:00:00

abstract：:Marine Group I (MGI) Thaumarchaeota are some of the most abundant microorganisms in the deep ocean and responsible for much of the ammonia oxidation occurring in this environment. In this work, we present 35 sequences assembled from metagenomic samples of the first uncultivated Caudovirales viruses associated with Tha...

journal_title：Environmental microbiology

authors： López-Pérez M,Haro-Moreno JM,de la Torre JR,Rodriguez-Valera F

更新日期：2019-06-01 00:00:00

abstract：:Fragilariopsis is a dominating psychrophilic diatom genus in polar sea ice. The two species Fragilariopsis cylindrus and Fragilariopsis curta are able to grow and divide below freezing temperature of sea water and above average sea water salinity. Here we show that antifreeze proteins (AFPs), involved in cold adaptati...

journal_title：Environmental microbiology

authors： Bayer-Giraldi M,Uhlig C,John U,Mock T,Valentin K

更新日期：2010-04-01 00:00:00

abstract：:Of eight laboratory cultures of marine gamma- and alpha-Proteobacteria tested, growth on glycolate as a sole carbon source was detected for only three species: Pseudomonas stutzeri, Oceanimonas doudoroffii and Roseobacter sp. isolate Y3F. Degenerate polymerase chain reaction (PCR) primers were designed to amplify glcD...

journal_title：Environmental microbiology

authors： Lau WW,Armbrust EV

更新日期：2006-10-01 00:00:00

abstract：:In order to study the effect of different chloroethenes (electron acceptors) on the bacterial composition of dechlorinating communities, two reductive dechlorinating enrichment cultures were developed that were able to reduce trichloroethene (TCE) and cis-1,2-dichloroethene (cis-DCE) to ethene using hydrogen as electr...

journal_title：Environmental microbiology

authors： Gu AZ,Hedlund BP,Staley JT,Strand SE,Stensel HD

更新日期：2004-01-01 00:00:00

abstract：:1,2-Dichloroethane (1,2-DCA), a chlorinated aliphatic hydrocarbon, is a well-known groundwater contaminant. In this study, fractionation of stable carbon isotope values of 1,2-DCA during biodegradation was used as a novel reaction probe to provide information about the mechanism of 1,2-DCA biodegradation under both ae...

journal_title：Environmental microbiology

authors： Hirschorn SK,Dinglasan-Panlilio MJ,Edwards EA,Lacrampe-Couloume G,Sherwood Lollar B

更新日期：2007-07-01 00:00:00

abstract：:The genome of the soil bacterium Pseudomonas putida KT2440 encodes singular orthologues of genes crp (encoding the catabolite repression protein, Crp) and cyaA (adenylate cyclase) of Escherichia coli. The levels of cAMP formed by P. putida cells were below detection with a Dictyostelium biosensor in vivo. The cyaA(P. ...

journal_title：Environmental microbiology

authors： Milanesio P,Arce-Rodríguez A,Muñoz A,Calles B,de Lorenzo V

更新日期：2011-02-01 00:00:00

abstract：:Bacteriophages, the viruses that infect bacteria, are the most abundant biological entities in the biosphere and play a key role in global biogeochemical cycling. All T4-type bacteriophage isolates tested so far have a conserved genetic module that encodes the virion components including gene 23 (g23), the major capsi...

journal_title：Environmental microbiology

authors： Jia Z,Ishihara R,Nakajima Y,Asakawa S,Kimura M

更新日期：2007-04-01 00:00:00

abstract：:Biofilms are thin layers of bacteria embedded within a slime matrix that live on surfaces. They are ubiquitous in nature and responsible for many medical and dental infections, industrial fouling and are also evident in ancient fossils. A biofilm structure is shaped by growth, detachment and response to mechanical for...

journal_title：Environmental microbiology

authors： Fabbri S,Li J,Howlin RP,Rmaile A,Gottenbos B,De Jager M,Starke EM,Aspiras M,Ward MT,Cogan NG,Stoodley P

更新日期：2017-11-01 00:00:00

abstract：:Although common knowledge dictates that the lichen thallus is formed solely by a fungus (mycobiont) that develops a symbiotic relationship with an alga and/or cyanobacterium (photobiont), the non-photoautotrophic bacteria found in lichen microbiomes are increasingly regarded as integral components of lichen thalli. Fo...

journal_title：Environmental microbiology

authors： Hodkinson BP,Gottel NR,Schadt CW,Lutzoni F

更新日期：2012-01-01 00:00:00

abstract：:The functioning of natural microbial ecosystems is influenced by various biotic and abiotic conditions. The careful experimental manipulation of environmental conditions can drive microbial ecosystems toward exhibiting desirable types of functionality. Such manipulations can be systematically approached by viewing the...

journal_title：Environmental microbiology

authors： Vandecasteele FP,Crawford RL,Hess TF

更新日期：2008-07-01 00:00:00

abstract：:Understanding the ecosystem functioning in the dark portion of the ocean is a challenge that microbial ecologists are still facing. Due to the large volume, the global deep Ocean plays a central role in the regulation of climate, possibly buffering the rise of atmospheric carbon dioxide if processes of CO2 fixation co...

journal_title：Environmental microbiology

authors： Celussi M,Malfatti F,Ziveri P,Giani M,Del Negro P

更新日期：2017-03-01 00:00:00

abstract：:The gene abundance and gene expression of six diazotroph populations from the Eastern Equatorial Atlantic in June 2007 were examined using nifH gene quantitative polymerase chain reaction (q PCR) methods. Of all the diazotrophs, Trichodesmium spp. was the most abundant with the highest number of gene copies in the Gul...

journal_title：Environmental microbiology

authors： Foster RA,Subramaniam A,Zehr JP

更新日期：2009-04-01 00:00:00

abstract：:It is well recognized that a dynamic biofilm develops upon plant biomass in the herbivore gastrointestinal tract, but this component of the microbiome has not previously been specifically sampled, or directly compared with the biodiversity present in the planktonic fraction of digesta. In this study, the digesta colle...

journal_title：Environmental microbiology

authors： Larue R,Yu Z,Parisi VA,Egan AR,Morrison M

更新日期：2005-04-01 00:00:00