Transcriptomic analysis links gene expression to unilateral pollen-pistil reproductive barriers.

Abstract:

BACKGROUND:Unilateral incompatibility (UI) is an asymmetric reproductive barrier that unidirectionally prevents gene flow between species and/or populations. UI is characterized by a compatible interaction between partners in one direction, but in the reciprocal cross fertilization fails, generally due to pollen tube rejection by the pistil. Although UI has long been observed in crosses between different species, the underlying molecular mechanisms are only beginning to be characterized. The wild tomato relative Solanum habrochaites provides a unique study system to investigate the molecular basis of this reproductive barrier, as populations within the species exhibit both interspecific and interpopulation UI. Here we utilized a transcriptomic approach to identify genes in both pollen and pistil tissues that may be key players in UI. RESULTS:We confirmed UI at the pollen-pistil level between a self-incompatible population and a self-compatible population of S. habrochaites. A comparison of gene expression between pollinated styles exhibiting the incompatibility response and unpollinated controls revealed only a small number of differentially expressed transcripts. Many more differences in transcript profiles were identified between UI-competent versus UI-compromised reproductive tissues. A number of intriguing candidate genes were highly differentially expressed, including a putative pollen arabinogalactan protein, a stylar Kunitz family protease inhibitor, and a stylar peptide hormone Rapid ALkalinization Factor. Our data also provide transcriptomic evidence that fundamental processes including reactive oxygen species (ROS) signaling are likely key in UI pollen-pistil interactions between both populations and species. CONCLUSIONS:Gene expression analysis of reproductive tissues allowed us to better understand the molecular basis of interpopulation incompatibility at the level of pollen-pistil interactions. Our transcriptomic analysis highlighted specific genes, including those in ROS signaling pathways that warrant further study in investigations of UI. To our knowledge, this is the first report to identify candidate genes involved in unilateral barriers between populations within a species.

journal_name

BMC Plant Biol

journal_title

BMC plant biology

authors

Broz AK,Guerrero RF,Randle AM,Baek YS,Hahn MW,Bedinger PA

doi

10.1186/s12870-017-1032-4

subject

Has Abstract

pub_date

2017-04-24 00:00:00

pages

81

issue

1

issn

1471-2229

pii

10.1186/s12870-017-1032-4

journal_volume

17

pub_type

杂志文章
  • Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens.

    abstract:BACKGROUND:Alternative splicing (AS) involving tandem acceptors that are separated by three nucleotides (NAGNAG) is an evolutionarily widespread class of AS, which is well studied in Homo sapiens (human) and Mus musculus (mouse). It has also been shown to be common in the model seed plants Arabidopsis thaliana and Oryz...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-76

    authors: Sinha R,Zimmer AD,Bolte K,Lang D,Reski R,Platzer M,Rensing SA,Backofen R

    更新日期:2010-04-28 00:00:00

  • Application of the thermal time model for different Typha domingensis populations.

    abstract:BACKGROUND:Cattail (Typha domingensis Pers.) is a perennial emergent plant which is used in Green Floating Filters (GFFs), one of the most innovative systems of wastewater treatment to bioremediate eutrophic waters and produce biomass as biofuel feedstocks. The establishment of cattails in GFFs depends on the seed germ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02573-3

    authors: Carhuancho León FM,Aguado Cortijo PL,Morató Izquierdo MDC,Castellanos Moncho MT

    更新日期:2020-08-17 00:00:00

  • Rice hypersensitive induced reaction protein 1 (OsHIR1) associates with plasma membrane and triggers hypersensitive cell death.

    abstract:BACKGROUND:In plants, HIR (Hypersensitive Induced Reaction) proteins, members of the PID (Proliferation, Ion and Death) superfamily, have been shown to play a part in the development of spontaneous hypersensitive response lesions in leaves, in reaction to pathogen attacks. The levels of HIR proteins were shown to corre...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-290

    authors: Zhou L,Cheung MY,Li MW,Fu Y,Sun Z,Sun SM,Lam HM

    更新日期:2010-12-30 00:00:00

  • Genetic basis of unstable expression of high gamma-tocopherol content in sunflower seeds.

    abstract:BACKGROUND:Tocopherols are natural antioxidants with both in vivo (vitamin E) and in vitro activity. Sunflower seeds contain predominantly alpha-tocopherol (>90% of total tocopherols), with maximum vitamin E effect but lower in vitro antioxidant action than other tocopherol forms such as gamma-tocopherol. Sunflower ger...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-12-71

    authors: García-Moreno MJ,Fernández-Martínez JM,Velasco L,Pérez-Vich B

    更新日期:2012-05-18 00:00:00

  • A high-throughput virus-induced gene silencing protocol identifies genes involved in multi-stress tolerance.

    abstract:BACKGROUND:Understanding the function of a particular gene under various stresses is important for engineering plants for broad-spectrum stress tolerance. Although virus-induced gene silencing (VIGS) has been used to characterize genes involved in abiotic stress tolerance, currently available gene silencing and stress ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-13-193

    authors: Ramegowda V,Senthil-kumar M,Udayakumar M,Mysore KS

    更新日期:2013-12-01 00:00:00

  • Plant breeding at the speed of light: the power of CRISPR/Cas to generate directed genetic diversity at multiple sites.

    abstract::Classical plant breeding was extremely successful in generating high yielding crop varieties. Yet, in modern crops, the long domestication process has impoverished the genetic diversity available for breeding. This is limiting further improvements of elite germplasm by classical approaches. The CRISPR/Cas system now e...

    journal_title:BMC plant biology

    pub_type: 杂志文章,评审

    doi:10.1186/s12870-019-1775-1

    authors: Wolter F,Schindele P,Puchta H

    更新日期:2019-05-02 00:00:00

  • Comparative proteome analysis of embryo and endosperm reveals central differential expression proteins involved in wheat seed germination.

    abstract:BACKGROUND:Wheat seeds provide a staple food and an important protein source for the world's population. Seed germination is vital to wheat growth and development and directly affects grain yield and quality. In this study, we performed the first comparative proteomic analysis of wheat embryo and endosperm during seed ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-015-0471-z

    authors: He M,Zhu C,Dong K,Zhang T,Cheng Z,Li J,Yan Y

    更新日期:2015-04-08 00:00:00

  • Accumulation and cellular toxicity of aluminum in seedling of Pinus massoniana.

    abstract:BACKGROUND:Masson pine (Pinus massoniana) is one of the most important timber species with adaptable, fast growing, versatile advantages in southern China. Despite considerable research efforts, the cellular and molecular mechanisms of A1 toxicity and resistance in P. massoniana are still poorly understood. The effects...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-014-0264-9

    authors: Zhang H,Jiang Z,Qin R,Zhang H,Zou J,Jiang W,Liu D

    更新日期:2014-09-30 00:00:00

  • Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications.

    abstract:BACKGROUND:Histone modifications and histone variants are of importance in many biological processes. To understand the biological functions of the global dynamics of histone modifications and histone variants in higher plants, we elucidated the variants and post-translational modifications of histones in soybean, a le...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-9-98

    authors: Wu T,Yuan T,Tsai SN,Wang C,Sun SM,Lam HM,Ngai SM

    更新日期:2009-07-31 00:00:00

  • Natural variation of physiological traits, molecular markers, and chlorophyll catabolic genes associated with heat tolerance in perennial ryegrass accessions.

    abstract:BACKGROUND:Identification of genetic diversity in heat tolerance and associated traits is of great importance for improving heat tolerance in cool-season grass species. The objectives of this study were to determine genetic variations in heat tolerance associated with phenotypic and physiological traits and to identify...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02695-8

    authors: Zhang J,Li H,Jiang Y,Li H,Zhang Z,Xu Z,Xu B,Huang B

    更新日期:2020-11-16 00:00:00

  • ABC1K10a, an atypical kinase, functions in plant salt stress tolerance.

    abstract:BACKGROUND:ABC1K (Activity of BC1 complex Kinase) is an evolutionarily primitive atypical kinase family widely distributed among prokaryotes and eukaryotes. The ABC1K protein kinases in Arabidopsis are predicted to localize either to the mitochondria or chloroplasts, in which plastid-located ABC1K proteins are involved...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02467-4

    authors: Qin X,Duan Z,Zheng Y,Liu WC,Guo S,Botella JR,Song CP

    更新日期:2020-06-10 00:00:00

  • Salt tolerance in Solanum pennellii: antioxidant response and related QTL.

    abstract:BACKGROUND:Excessive soil salinity is an important problem for agriculture, however, salt tolerance is a complex trait that is not easily bred into plants. Exposure of cultivated tomato to salt stress has been reported to result in increased antioxidant content and activity. Salt tolerance of the related wild species, ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-58

    authors: Frary A,Göl D,Keleş D,Okmen B,Pinar H,Siğva HO,Yemenicioğlu A,Doğanlar S

    更新日期:2010-04-06 00:00:00

  • Pyramiding, alternating or mixing: comparative performances of deployment strategies of nematode resistance genes to promote plant resistance efficiency and durability.

    abstract:BACKGROUND:Resistant cultivars are key elements for pathogen control and pesticide reduction, but their repeated use may lead to the emergence of virulent pathogen populations, able to overcome the resistance. Increased research efforts, mainly based on theoretical studies, explore spatio-temporal deployment strategies...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-14-53

    authors: Djian-Caporalino C,Palloix A,Fazari A,Marteu N,Barbary A,Abad P,Sage-Palloix AM,Mateille T,Risso S,Lanza R,Taussig C,Castagnone-Sereno P

    更新日期:2014-02-22 00:00:00

  • Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.

    abstract:BACKGROUND:Recent genome sequencing enables mega-base scale comparisons between related genomes. Comparisons between animals, plants, fungi, and bacteria demonstrate extensive synteny tempered by rearrangements. Within the legume plant family, glimpses of synteny have also been observed. Characterizing syntenic relatio...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-5-15

    authors: Mudge J,Cannon SB,Kalo P,Oldroyd GE,Roe BA,Town CD,Young ND

    更新日期:2005-08-15 00:00:00

  • The plant short-chain dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patterns.

    abstract:BACKGROUND:Short-chain dehydrogenases/reductases (SDRs) form one of the largest and oldest NAD(P)(H) dependent oxidoreductase families. Despite a conserved 'Rossmann-fold' structure, members of the SDR superfamily exhibit low sequence similarities, which constituted a bottleneck in terms of identification. Recent class...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-12-219

    authors: Moummou H,Kallberg Y,Tonfack LB,Persson B,van der Rest B

    更新日期:2012-11-20 00:00:00

  • Physiological responses and proteomic changes reveal insights into Stylosanthes response to manganese toxicity.

    abstract:BACKGROUND:Manganese (Mn), an essential element for plants, can be toxic when present in excess. Stylo (Stylosanthes) is a pioneer tropical legume with great potential for Mn tolerance, but its Mn tolerance mechanisms remain poorly understood. RESULTS:In this study, variations in Mn tolerance were observed among nine ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-019-1822-y

    authors: Liu P,Huang R,Hu X,Jia Y,Li J,Luo J,Liu Q,Luo L,Liu G,Chen Z

    更新日期:2019-05-22 00:00:00

  • Auxin mediates the touch-induced mechanical stimulation of adventitious root formation under windy conditions in Brachypodium distachyon.

    abstract:BACKGROUND:It is widely perceived that mechanical or thigmomorphogenic stimuli, such as rubbing and bending by passing animals, wind, raindrop, and flooding, broadly influence plant growth and developmental patterning. In particular, wind-driven mechanical stimulation is known to induce the incidence of radial expansio...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-020-02544-8

    authors: Nam BE,Park YJ,Gil KE,Kim JH,Kim JG,Park CM

    更新日期:2020-07-16 00:00:00

  • PT-Flax (phenotyping and TILLinG of flax): development of a flax (Linum usitatissimum L.) mutant population and TILLinG platform for forward and reverse genetics.

    abstract:BACKGROUND:Flax (Linum usitatissimum L.) is an economically important fiber and oil crop that has been grown for thousands of years. The genome has been recently sequenced and transcriptomics are providing information on candidate genes potentially related to agronomically-important traits. In order to accelerate funct...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-13-159

    authors: Chantreau M,Grec S,Gutierrez L,Dalmais M,Pineau C,Demailly H,Paysant-Leroux C,Tavernier R,Trouvé JP,Chatterjee M,Guillot X,Brunaud V,Chabbert B,van Wuytswinkel O,Bendahmane A,Thomasset B,Hawkins S

    更新日期:2013-10-15 00:00:00

  • Genome-wide association study of resistance to stripe rust (Puccinia striiformis f. sp. tritici) in Sichuan wheat.

    abstract:BACKGROUND:Stripe rust (also called yellow rust) is a common and serious fungal disease of wheat (Triticum aestivum L.) caused by Puccinia striiformis f. sp. tritici. The narrow genetic basis of modern wheat cultivars and rapid evolution of the rust pathogen have been responsible for periodic and devastating epidemics ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-019-1764-4

    authors: Ye X,Li J,Cheng Y,Yao F,Long L,Yu C,Wang Y,Wu Y,Li J,Wang J,Jiang Q,Li W,Ma J,Wei Y,Zheng Y,Chen G

    更新日期:2019-04-16 00:00:00

  • Reciprocity between abscisic acid and ethylene at the onset of berry ripening and after harvest.

    abstract:BACKGROUND:The ripening of grape berry is generally regulated by abscisic acid (ABA), and has no relationship with ethylene function. However, functional interaction and synergism between ABA and ethylene during the beginning of grape berry ripening (véraison) has been found recently. RESULTS:The expressions of VvNCED...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-10-257

    authors: Sun L,Zhang M,Ren J,Qi J,Zhang G,Leng P

    更新日期:2010-11-22 00:00:00

  • QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize.

    abstract:BACKGROUND:Fusarium verticillioides is a common maize pathogen causing ear rot (FER) and contamination of the grains with the fumonisin B1 (FB1) mycotoxin. Resistance to FER and FB1 contamination are quantitative traits, affected by environmental conditions, and completely resistant maize genotypes to the pathogen are ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-017-0970-1

    authors: Maschietto V,Colombi C,Pirona R,Pea G,Strozzi F,Marocco A,Rossini L,Lanubile A

    更新日期:2017-01-21 00:00:00

  • Transcript profiles uncover temporal and stress-induced changes of metabolic pathways in germinating sugar beet seeds.

    abstract:BACKGROUND:With a cultivation area of 1.75 Mio ha and sugar yield of 16.7 Mio tons in 2006, sugar beet is a crop of great economic importance in Europe. The productivity of sugar beet is determined significantly by seed vigour and field emergence potential; however, little is known about the molecular mechanisms underl...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-8-122

    authors: Pestsova E,Meinhard J,Menze A,Fischer U,Windhövel A,Westhoff P

    更新日期:2008-12-01 00:00:00

  • The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway.

    abstract:BACKGROUND:Although a number of leucine-rich repeat receptor-like kinase-encoding genes (LRR-RLKs) have been identified in plants, a functional role has been determined for only a few. Recent studies have demonstrated that an LRR-RLK, PXY/TDR, is important for the process of secondary vascular development. Other studie...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/1471-2229-13-94

    authors: Wang J,Kucukoglu M,Zhang L,Chen P,Decker D,Nilsson O,Jones B,Sandberg G,Zheng B

    更新日期:2013-07-01 00:00:00

  • Expression and testing in plants of ArcLight, a genetically-encoded voltage indicator used in neuroscience research.

    abstract:BACKGROUND:It is increasingly appreciated that electrical controls acting at the cellular and supra-cellular levels influence development and initiate rapid responses to environmental cues. An emerging method for non-invasive optical imaging of electrical activity at cell membranes uses genetically-encoded voltage indi...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-015-0633-z

    authors: Matzke AJ,Matzke M

    更新日期:2015-10-12 00:00:00

  • Natural variation in a CENTRORADIALIS homolog contributed to cluster fruiting and early maturity in cotton.

    abstract:BACKGROUND:Plant architecture and the vegetative-reproductive transition have major impacts on the agronomic success of crop plants, but genetic mechanisms underlying these traits in cotton (Gossypium spp.) have not been identified. RESULTS:We identify four natural mutations in GoCEN-Dt associated with cluster fruitin...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-018-1518-8

    authors: Liu D,Teng Z,Kong J,Liu X,Wang W,Zhang X,Zhai T,Deng X,Wang J,Zeng J,Xiao Y,Guo K,Zhang J,Liu D,Wang W,Zhang Z

    更新日期:2018-11-20 00:00:00

  • A novel system for evaluating drought-cold tolerance of grapevines using chlorophyll fluorescence.

    abstract:BACKGROUND:Grape production in continental climatic regions suffers from the combination of drought and cold stresses during winter. Developing a reliable system to simulate combined drought-cold stress and to determine physiological responses and regulatory mechanisms is important. Evaluating tolerance to combined str...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-015-0459-8

    authors: Su L,Dai Z,Li S,Xin H

    更新日期:2015-03-11 00:00:00

  • The "one-step" Bean pod mottle virus (BPMV)-derived vector is a functional genomics tool for efficient overexpression of heterologous protein, virus-induced gene silencing and genetic mapping of BPMV R-gene in common bean (Phaseolus vulgaris L.).

    abstract:BACKGROUND:Over the last two years, considerable advances have been made in common bean (Phaseolus vulgaris L.) genomics, especially with the completion of the genome sequence and the availability of RNAseq data. However, as common bean is recalcitrant to stable genetic transformation, much work remains to be done for ...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-014-0232-4

    authors: Pflieger S,Blanchet S,Meziadi C,Richard MM,Thareau V,Mary F,Mazoyer C,Geffroy V

    更新日期:2014-08-29 00:00:00

  • Photoinhibition and photoinhibition-like damage to the photosynthetic apparatus in tobacco leaves induced by pseudomonas syringae pv. Tabaci under light and dark conditions.

    abstract:BACKGROUND:Pseudomonas syringae pv. tabaci (Pst), which is the pathogen responsible for tobacco wildfire disease, has received considerable attention in recent years. The objective of this study was to clarify the responses of photosystem I (PSI) and photosystem II (PSII) to Pst infection in tobacco leaves. RESULTS:Th...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-016-0723-6

    authors: Cheng DD,Zhang ZS,Sun XB,Zhao M,Sun GY,Chow WS

    更新日期:2016-01-25 00:00:00

  • Exposure to trace amounts of sulfonylurea herbicide tribenuron-methyl causes male sterility in 17 species or subspecies of cruciferous plants.

    abstract:BACKGROUND:For most cruciferous plants, which are known as important crops and a number of weeds, hybrid breeding is hampered by the unavailability of a pollination control system. Male sterility induced by a gametocide can be useful for the utilization of plant heterosis. RESULTS:The gametocidal effect of sulfonylure...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-017-1019-1

    authors: Yu CY,Dong JG,Hu SW,Xu AX

    更新日期:2017-06-01 00:00:00

  • Ostkpr1 functions in anther cuticle development and pollen wall formation in rice.

    abstract:BACKGROUND:During pollen wall formation in flowering plants, a conserved metabolon consisting of acyl-CoA synthetase (ACOS), polyketide synthase (PKS) and tetraketide α-pyrone reductase (TKPR), is required for sporopollenin synthesis. Despite this, the precise function of each of these components in different species r...

    journal_title:BMC plant biology

    pub_type: 杂志文章

    doi:10.1186/s12870-019-1711-4

    authors: Xu D,Qu S,Tucker MR,Zhang D,Liang W,Shi J

    更新日期:2019-03-18 00:00:00