Response of the rhizosphere prokaryotic community of barley (Hordeum vulgare L.) to elevated atmospheric CO2 concentration in open-top chambers.

Abstract:

:The effect of elevated atmospheric CO2 concentration [CO2 ] on the diversity and composition of the prokaryotic community inhabiting the rhizosphere of winter barley (Hordeum vulgare L.) was investigated in a field experiment, using open-top chambers. Rhizosphere samples were collected at anthesis (flowering stage) from six chambers with ambient [CO2 ] (approximately 400 ppm) and six chambers with elevated [CO2 ] (700 ppm). The V4 region of the 16S rRNA gene was PCR-amplified from the extracted DNA and sequenced on an Illumina MiSeq instrument. Above-ground plant biomass was not affected by elevated [CO2 ] at anthesis, but plants exposed to elevated [CO2 ] had significantly higher grain yield. The composition of the rhizosphere prokaryotic communities was very similar under ambient and elevated [CO2 ]. The dominant taxa were Bacteroidetes, Actinobacteria, Alpha-, Gamma-, and Betaproteobacteria. Elevated [CO2 ] resulted in lower prokaryotic diversity in the rhizosphere, but did not cause a significant difference in community structure.

journal_name

Microbiologyopen

journal_title

MicrobiologyOpen

authors

Szoboszlay M,Näther A,Mitterbauer E,Bender J,Weigel HJ,Tebbe CC

doi

10.1002/mbo3.462

subject

Has Abstract

pub_date

2017-08-01 00:00:00

issue

4

issn

2045-8827

journal_volume

6

pub_type

杂志文章
  • Swimming and rafting of E.coli microcolonies at air-liquid interfaces.

    abstract::The dynamics of swimming microorganisms is strongly affected by solid-liquid and air-liquid interfaces. In this paper, we characterize the motion of both single bacteria and microcolonies at an air-liquid interface. Both of them follow circular trajectories. Single bacteria preferentially show a counter-clockwise moti...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.532

    authors: Sinibaldi G,Iebba V,Chinappi M

    更新日期:2018-02-01 00:00:00

  • Possible association of diazotrophs with marine zooplankton in the Pacific Ocean.

    abstract::Dinitrogen fixation, the biological reduction in N2 gas to ammonia contributes to the supply of new nitrogen in the surface ocean. To understand the diversity and abundance of potentially diazotrophic (N2 fixing) microorganisms associated with marine zooplankton, especially copepods, the nifH gene was studied using zo...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.385

    authors: Azimuddin KM,Hirai J,Suzuki S,Haider MN,Tachibana A,Watanabe K,Kitamura M,Hashihama F,Takahashi K,Hamasaki K

    更新日期:2016-12-01 00:00:00

  • The PAS domains of the major sporulation kinase in Bacillus subtilis play a role in tetramer formation that is essential for the autokinase activity.

    abstract::Sporulation in Bacillus subtilis is induced upon starvation. In a widely accepted model, an N-terminal "sensor" domain of the major sporulation kinase KinA recognizes a hypothetical starvation signal(s) and autophosphorylates a histidine residue to activate the master regulator Spo0A via a multicomponent phosphorelay....

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.481

    authors: Kiehler B,Haggett L,Fujita M

    更新日期:2017-08-01 00:00:00

  • Evolutionary changes of an intestinal Lactobacillus reuteri during probiotic manufacture.

    abstract::Probiotic bacteria are frequently used to treat intestinal diseases or to improve health; however, little is known about the evolutionary changes of these bacteria during probiotic manufacture and the bacterial ability to colonize the intestine. It has been observed that when bacteria adapt to a new environment, they ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.972

    authors: López L,Calderón D,Cardenas P,Prado MB,Valle C,Trueba G

    更新日期:2020-02-01 00:00:00

  • The DNABII family of proteins is comprised of the only nucleoid associated proteins required for nontypeable Haemophilus influenzae biofilm structure.

    abstract::Biofilms play a central role in the pathobiology of otitis media (OM), bronchitis, sinusitis, conjunctivitis, and pneumonia caused by nontypeable Haemophilus influenzae (NTHI). Our previous studies show that extracellular DNA (eDNA) and DNABII proteins are essential components of biofilms formed by NTHI. The DNABII pr...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.563

    authors: Devaraj A,Buzzo J,Rocco CJ,Bakaletz LO,Goodman SD

    更新日期:2018-06-01 00:00:00

  • Revisiting the pink-red pigmented basidiomycete mirror yeast of the phyllosphere.

    abstract::By taking advantage of the ballistoconidium-forming capabilities of members of the genus Sporobolomyces, we recovered ten isolates from deciduous tree leaves collected from Vermont and Washington, USA. Analysis of the small subunit ribosomal RNA gene and the D1/D2 domain of the large subunit ribosomal RNA gene indicat...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.374

    authors: Cobban A,Edgcomb VP,Burgaud G,Repeta D,Leadbetter ER

    更新日期:2016-10-01 00:00:00

  • Microbial composition of enigmatic bird parasites: Wolbachia and Spiroplasma are the most important bacterial associates of quill mites (Acariformes: Syringophilidae).

    abstract:BACKGROUND:The microbiome is an integral component of many animal species, potentially affecting behavior, physiology, and other biological properties. Despite this importance, bacterial communities remain vastly understudied in many groups of invertebrates, including mites. Quill mites (Acariformes: Syringophilidae) a...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.964

    authors: Glowska E,Filutowska ZK,Dabert M,Gerth M

    更新日期:2020-05-01 00:00:00

  • Mcr colistin resistance gene: a systematic review of current diagnostics and detection methods.

    abstract::Resistance to colistin, mediated by chromosomal mutations and more recently, by plasmid-borne mcr genes, is increasingly being reported in bacterial isolates taken from humans, animals, farms, foods, and the environment. To easily identify and contain this quickly spreading menace, efficient diagnostics that are cheap...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.682

    authors: Osei Sekyere J

    更新日期:2019-04-01 00:00:00

  • Biological degradation of aflatoxin M1 by Bacillus pumilus E-1-1-1.

    abstract::Aflatoxin M1 (AFM1 ) is a potent mycotoxin which causes serious health concerns in developing countries, where it is mainly found in milk, meat, and other foods. Biological detoxification is a promising method for eliminating AFM1 . The aim of this work was to search for AFM1 -degrading bacterial strains from animal w...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.663

    authors: Gu X,Sun J,Cui Y,Wang X,Sang Y

    更新日期:2019-03-01 00:00:00

  • Co-dynamics of Symbiodiniaceae and bacterial populations during the first year of symbiosis with Acropora tenuis juveniles.

    abstract::Interactions between corals and their associated microbial communities (Symbiodiniaceae and prokaryotes) are key to understanding corals' potential for and rate of acclimatory and adaptive responses. However, the establishment of microalgal and bacterial communities is poorly understood during coral ontogeny in the wi...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.959

    authors: Quigley KM,Alvarez Roa C,Torda G,Bourne DG,Willis BL

    更新日期:2020-02-01 00:00:00

  • Bacterial-like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis.

    abstract::Bacterial nitric oxide (NO) synthases (bNOS) play diverse and important roles in microbial physiology, stress resistance, and virulence. Although bacterial and mammalian NOS enzymes have been well-characterized, comparatively little is known about the prevalence and function of NOS enzymes in Archaea. Analysis of arch...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.1124

    authors: Orsini SS,James KL,Reyes DJ,Couto-Rodriguez RL,Gulko MK,Witte A,Carroll RK,Rice KC

    更新日期:2020-11-01 00:00:00

  • Investigating the effect of carbon source on rabies virus glycoprotein production in Pichia pastoris by a transcriptomic approach.

    abstract::Several factors affect protein expression in Pichia pastoris, one among them is the carbon source. In this work, we studied the effect of this factor on the expression level of rabies virus glycoprotein (RABV-G) in two recombinant clones harboring seven copies of the gene of interest. The expression was driven either ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.489

    authors: Ben Azoun S,Kallel H

    更新日期:2017-08-01 00:00:00

  • Truncation of type IV pilin induces mucoidy in Pseudomonas aeruginosa strain PAO579.

    abstract::Pseudomonas aeruginosa is a Gram negative, opportunistic pathogen that uses the overproduction of alginate, a surface polysaccharide, to form biofilms in vivo. Overproduction of alginate, also known as mucoidy, affords the bacterium protection from the host's defenses and facilitates the establishment of chronic lung ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.86

    authors: Ryan Withers T,Heath Damron F,Yin Y,Yu HD

    更新日期:2013-06-01 00:00:00

  • Effect of two cosmetic compounds on the growth, biofilm formation activity, and surface properties of acneic strains of Cutibacterium acnes and Staphylococcus aureus.

    abstract::Increasing popularity of preservative-free cosmetics necessitates in-depth research, specifically as bacteria can react to local factors by important metabolic changes. In this respect, investigating the effect of cosmetic preparations on pathogenic strains of commensal species such as acneic forms of Cutibacterium ac...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.659

    authors: Gannesen AV,Borrel V,Lefeuvre L,Netrusov AI,Plakunov VK,Feuilloley MGJ

    更新日期:2019-03-01 00:00:00

  • Virulence behavior of uropathogenic Escherichia coli strains in the host model Caenorhabditis elegans.

    abstract::Urinary tract infections (UTIs) are among the most common bacterial infections in humans. Although a number of bacteria can cause UTIs, most cases are due to infection by uropathogenic Escherichia coli (UPEC). UPEC are a genetically heterogeneous group that exhibit several virulence factors associated with colonizatio...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.756

    authors: Schifano E,Marazzato M,Ammendolia MG,Zanni E,Ricci M,Comanducci A,Goldoni P,Conte MP,Uccelletti D,Longhi C

    更新日期:2019-06-01 00:00:00

  • σ(N) -dependent control of acid resistance and the locus of enterocyte effacement in enterohemorrhagic Escherichia coli is activated by acetyl phosphate in a manner requiring flagellar regulator FlhDC and the σ(S) antagonist FliZ.

    abstract::In enterohemorrhagic Escherichia coli (EHEC), sigma factor N (σ(N)) regulates glutamate-dependent acid resistance (GDAR) and the locus of enterocyte effacement (LEE); discrete genetic systems that are required for transmission and virulence of this intestinal pathogen. Regulation of these systems requires nitrogen reg...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.183

    authors: Mitra A,Fay PA,Vendura KW,Alla Z,Carroll RK,Shaw LN,Riordan JT

    更新日期:2014-08-01 00:00:00

  • The differential susceptibility of spores from virulent and attenuated Bacillus anthracis strains to aldehyde- and hypochlorite-based disinfectants.

    abstract::This study compared the sensitivity of spores from virulent and attenuated Bacillus anthracis strains in suspension to inactivation by various chemical disinfectants. Spore suspensions from two virulent strains (A0256 and A0372) and two attenuated strains (Sterne and A0141) of B. anthracis were tested against two alde...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.45

    authors: March JK,Cohen MN,Lindsey JM,Millar DA,Lowe CW,Bunnell AJ,O'Neill KL,Schaalje GB,Robison RA

    更新日期:2012-12-01 00:00:00

  • Investigating cross-contamination by yeast strains from dental solid waste to waste-handling workers by DNA sequencing.

    abstract::Trying to widen the discussion on the risks associated with dental waste, this study proposed to investigate and genetically compare yeast isolates recovered from dental solid waste and waste workers. Three samples were collected from workers' hands, nasal mucosa, and professional clothing (days 0, 30, and 180), and t...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.554

    authors: Vieira CD,Tagliaferri TL,de Carvalho MAR,de Resende-Stoianoff MA,Holanda RA,de Magalhães TFF,Magalhães PP,Dos Santos SG,de Macêdo Farias L

    更新日期:2018-04-01 00:00:00

  • Depletion of acidic phospholipids influences chromosomal replication in Escherichia coli.

    abstract::In Escherichia coli, coordinated activation and deactivation of DnaA allows for proper timing of the initiation of chromosomal synthesis at the origin of replication (oriC) and assures initiation occurs once per cell cycle. In vitro, acidic phospholipids reactivate DnaA, and in vivo depletion of acidic phospholipids, ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.46

    authors: Fingland N,Flåtten I,Downey CD,Fossum-Raunehaug S,Skarstad K,Crooke E

    更新日期:2012-12-01 00:00:00

  • Characterization of carotenoids in Rhodothermus marinus.

    abstract::Rhodothermus marinus, a marine aerobic thermophile, was first isolated from an intertidal hot spring in Iceland. In recent years, the R. marinus strain PRI 493 has been genetically modified, which opens up possibilities for targeted metabolic engineering of the species, such as of the carotenoid biosynthetic pathway. ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.536

    authors: Ron EYC,Plaza M,Kristjansdottir T,Sardari RRR,Bjornsdottir SH,Gudmundsson S,Hreggvidsson GO,Turner C,van Niel EWJ,Nordberg-Karlsson E

    更新日期:2018-02-01 00:00:00

  • Immunity protein release from a cell-bound nuclease colicin complex requires global conformational rearrangement.

    abstract::Nuclease colicins bind their target receptor BtuB in the outer membrane of sensitive Escherichia coli cells in the form of a high-affinity complex with their cognate immunity proteins. The release of the immunity protein from the colicin complex is a prerequisite for cell entry of the colicin and occurs via a process ...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.122

    authors: Vankemmelbeke M,Housden NG,James R,Kleanthous C,Penfold CN

    更新日期:2013-10-01 00:00:00

  • Genotypic and phenotypic characterization of Escherichia coli isolated from mollusks in Brazil and the United States.

    abstract::The aim of this study was to determine the serogroups, antimicrobial resistance and genetic diversity of Escherichia coli isolates from samples of bivalve mollusks collected along Santa Catarina coast, Brazil, and from the Chesapeake Bay, Maryland, USA. One hundred forty-one E. coli isolates were characterized for ser...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.738

    authors: Miotto M,Ossai SA,Meredith JE,Barretta C,Kist A,Prudencio ES,R W Vieira C,Parveen S

    更新日期:2019-05-01 00:00:00

  • Detection of methicillin-resistant Staphylococcus aureus persistence in osteoblasts using imaging flow cytometry.

    abstract::Methicillin-resistant S. aureus has been reported as the main pathogen involved in chronic infections, osteomyelitis, and prosthetic joint infections. The host/pathogen interaction is dynamic and requires several changes to promote bacterial survival. Here, we focused on the internalization and persistence behavior of...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.1017

    authors: Bongiorno D,Musso N,Lazzaro LM,Mongelli G,Stefani S,Campanile F

    更新日期:2020-05-01 00:00:00

  • Meloxicam inhibits biofilm formation and enhances antimicrobial agents efficacy by Pseudomonas aeruginosa.

    abstract::Microbial biofilms are communities of surface-adhered cells enclosed in a matrix of extracellular polymeric substances. Bacterial cells in biofilm are 10~1,000-fold more resistant to antimicrobials than the planktonic cells. Burgeoning antibiotic resistance in Pseudomonas aeruginosa biofilm has necessitated the develo...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.545

    authors: She P,Wang Y,Luo Z,Chen L,Tan R,Wang Y,Wu Y

    更新日期:2018-02-01 00:00:00

  • Acetylome analysis of lysine acetylation in the plant pathogenic bacterium Brenneria nigrifluens.

    abstract::Protein lysine acetylation, a dynamic and reversible posttranslational modification, plays a crucial role in several cellular processes, including cell cycle regulation, metabolism, enzymatic activities, and protein interactions. Brenneria nigrifluens is a pathogen of walnut trees with shallow bark canker and can caus...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.952

    authors: Li Y,Xue H,Bian DR,Xu G,Piao C

    更新日期:2020-01-01 00:00:00

  • Iron-regulated metabolites produced by Pseudomonas fluorescens WCS374r are not required for eliciting induced systemic resistance against Pseudomonas syringae pv. tomato in Arabidopsis.

    abstract::The plant growth-promoting rhizobacterium Pseudomonas fluorescens WCS374r produces several iron-regulated metabolites, including the fluorescent siderophore pseudobactin (Psb374), salicylic acid (SA), and pseudomonine (Psm), a siderophore that contains a SA moiety. After purification of Psb374 from culture supernatant...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.32

    authors: Djavaheri M,Mercado-Blanco J,Versluis C,Meyer JM,Loon LC,Bakker PA

    更新日期:2012-09-01 00:00:00

  • Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection.

    abstract::Marine picocyanobacteria belonging to genera Synechococcus and Prochlorococcus are genetically diverged and distributed into distinct biogeographical patterns, and both are infected by genetically closely related cyanopodoviruses. Previous studies have not fully explored whether the two virus-host systems share simila...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.1150

    authors: Huang S,Sun Y,Zhang S,Long L

    更新日期:2020-12-30 00:00:00

  • Genetic determinants of swimming motility in the squid light-organ symbiont Vibrio fischeri.

    abstract::Bacterial flagellar motility is a complex cellular behavior required for the colonization of the light-emitting organ of the Hawaiian bobtail squid, Euprymna scolopes, by the beneficial bioluminescent symbiont Vibrio fischeri. We characterized the basis of this behavior by performing (i) a forward genetic screen to id...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.96

    authors: Brennan CA,Mandel MJ,Gyllborg MC,Thomasgard KA,Ruby EG

    更新日期:2013-08-01 00:00:00

  • Influence of agro-environmental pollutants on a biocontrol strain of Bacillus velezensis.

    abstract::Metal- and pesticide-tolerant biocontrol agents are preferred in integrated pest management, as such strains can be applied in combination with different pesticides. The Bacillus velezensis strain SZMC 6161J proved to be sensitive to copper, nickel, zinc, and cadmium, while manganese elevated its growth. At concentrat...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.660

    authors: Vörös M,Manczinger L,Kredics L,Szekeres A,Shine K,Alharbi NS,Khaled JM,Vágvölgyi C

    更新日期:2019-03-01 00:00:00

  • UV Resistance of bacteria from the Kenyan Marine cyanobacterium Moorea producens.

    abstract::UV resistance of bacteria isolated from the marine cyanobacterium Moorea producens has not been observed previously, findings which highlight how unsafe germicidal UV irradiation for sterilization of air, food, and water could be. Further, UV resistance of Bacillus licheniformis is being observed for the first time. T...

    journal_title:MicrobiologyOpen

    pub_type: 杂志文章

    doi:10.1002/mbo3.697

    authors: Dzeha T,Nyiro C,Kardasopoulos D,Mburu D,Mwafaida J,Hall MJ,Burgess JG

    更新日期:2019-04-01 00:00:00