Soil classification predicts differences in prokaryotic communities across a range of geographically distant soils once pH is accounted for.

Abstract:

:Agricultural land is typically managed based on visible plant life at the expense of the belowground majority. However, microorganisms mediate processes sustaining plant life and the soil environment. To understand the role of microbes we first must understand what controls soil microbial community assembly. We assessed the distribution and composition of prokaryotic communities from soils representing four geographic regions on the South Island of New Zealand. These soils are under three different uses (dairy, sheep and beef, and high country farming) and are representative of major soil classification groups (brown, pallic, gley and recent). We hypothesized that pH would account for major community patterns based on 16S profiles, but that land use and location would be secondary modifiers. Community diversity and structure was linked to pH, coinciding with land use. Soil classification correlated with microbial community structure and evenness, but not richness in high country and sheep and beef communities. The impact of land use and pH remained significant at the regional scale, but soil classification provided support for community variability not explained by either of those factors. These results suggest that several edaphic properties must be examined at multiple spatial scales to robustly examine soil prokaryotic communities.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kaminsky R,Trouche B,Morales SE

doi

10.1038/srep45369

subject

Has Abstract

pub_date

2017-03-28 00:00:00

pages

45369

issn

2045-2322

pii

srep45369

journal_volume

7

pub_type

杂志文章
  • AlkB homolog 3-mediated tRNA demethylation promotes protein synthesis in cancer cells.

    abstract::The mammalian AlkB homolog (ALKBH) family of proteins possess a 2-oxoglutarate- and Fe(II)-dependent oxygenase domain. A similar domain in the Escherichia coli AlkB protein catalyzes the oxidative demethylation of 1-methyladenine (1-meA) and 3-methylcytosine (3-meC) in both DNA and RNA. AlkB homolog 3 (ALKBH3) was als...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42271

    authors: Ueda Y,Ooshio I,Fusamae Y,Kitae K,Kawaguchi M,Jingushi K,Hase H,Harada K,Hirata K,Tsujikawa K

    更新日期:2017-02-13 00:00:00

  • Magnetically guided non-invasive CRISPR-Cas9/gRNA delivery across blood-brain barrier to eradicate latent HIV-1 infection.

    abstract::CRISPR-Cas9/gRNA exhibits therapeutic efficacy against latent human immunodeficiency virus (HIV) genome but the delivery of this therapeutic cargo to the brain remains as a challenge. In this research, for the first time, we demonstrated magnetically guided non-invasive delivery of a nano-formulation (NF), composed of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40222-4

    authors: Kaushik A,Yndart A,Atluri V,Tiwari S,Tomitaka A,Gupta P,Jayant RD,Alvarez-Carbonell D,Khalili K,Nair M

    更新日期:2019-03-08 00:00:00

  • Upregulation of arylsulfatase B in carotid atherosclerosis is associated with symptoms of cerebral embolization.

    abstract::The aim of this study was to identify genes for which the expression within carotid atherosclerosis was reproducibly associated with the symptoms of cerebral embolization. Two publically available microarray datasets E-MEXP-2257 and GSE21545 were analysed using GeneSpring 11.5. The two datasets utilized a total of 22 ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04497-9

    authors: Biros E,Moran CS,Maguire J,Holliday E,Levi C,Golledge J

    更新日期:2017-06-28 00:00:00

  • The Traditional Chinese Medicine MLC901 inhibits inflammation processes after focal cerebral ischemia.

    abstract::Inflammation is considered as a major contributor to brain injury following cerebral ischemia. The therapeutic potential of both MLC601/MLC901, which are herbal extract preparations derived from Chinese Medicine, has been reported both in advanced stroke clinical trials and also in animal and cellular models. The aim ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-36138-0

    authors: Widmann C,Gandin C,Petit-Paitel A,Lazdunski M,Heurteaux C

    更新日期:2018-12-24 00:00:00

  • A previously unreported impact of a PLA2G7 gene polymorphism on the plasma levels of lipoprotein-associated phospholipase A2 activity and mass.

    abstract::Lipoprotein-associated phospholipase A2 (Lp-PLA2) levels are associated with the development of atherosclerosis. We aimed to assess the genetic determinants of Lp-PLA2 activity and mass by genotyping multiple polymorphisms in PLA2G7, the gene encoding Lp-PLA2, among 1258 participants from the Chinese Multi-provincial ...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/srep37465

    authors: Qi Y,Zhao D,Jia Z,Wang W,Wang M,Sun J,Liu J,Li Y,Xie W,Liu J

    更新日期:2016-12-01 00:00:00

  • Implicit emotion regulation deficits in individuals with high schizotypal traits: an ERP study.

    abstract::Schizotypy is associated with poor emotion regulation that is thought to contribute to the development of psychotic symptoms and to indicate a predisposition to schizophrenia. Having focused primarily on the relationship between schizotypy and explicit emotion regulation, existing studies have, until now, neglected to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60787-9

    authors: Hoid D,Pan DN,Wang Y,Li X

    更新日期:2020-03-03 00:00:00

  • Clinical Application of Artificial Ascites in assisting CT-guided Percutaneous Cryoablation of Hepatic Tumors Adjacent to the Gastrointestinal Tract.

    abstract::This study was to assess the safety and efficacy of artificial ascitetes in assisting CT-guided cryoablation of hepatic tumors adjacent to the gastrointestinal (GI) tract. A total of 84 patients with peripheral hepatic tumors adjacent to the GI tract, who were treated cryoablation, were included in this retrospective ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17023-8

    authors: Li B,Liu C,Xu XX,Li Y,Du Y,Zhang C,Zheng HJ,Yang HF

    更新日期:2017-11-30 00:00:00

  • Negative reciprocal regulation between Sirt1 and Per2 modulates the circadian clock and aging.

    abstract::Sirtuin 1 (SIRT1) is involved in both aging and circadian-clock regulation, yet the link between the two processes in relation to SIRT1 function is not clear. Using Sirt1-deficient mice, we found that Sirt1 and Period 2 (Per2) constitute a reciprocal negative regulation loop that plays important roles in modulating he...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28633

    authors: Wang RH,Zhao T,Cui K,Hu G,Chen Q,Chen W,Wang XW,Soto-Gutierrez A,Zhao K,Deng CX

    更新日期:2016-06-27 00:00:00

  • Fine-tuning the expression of target genes using a DDI2 promoter gene switch in budding yeast.

    abstract::Tuned gene expression is crucial to the proper growth and response to the environmental changes of an organism. To enable tunable gene expression as designed is desirable in both scientific research and industrial application. Here, we introduce a novel promoter switching method based on the DDI2 promoter (PDDI2) that...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49000-8

    authors: Wang Y,Zhang K,Li H,Xu X,Xue H,Wang P,Fu YV

    更新日期:2019-08-29 00:00:00

  • Metal-free carbon nanotubes: synthesis, and enhanced intrinsic microwave absorption properties.

    abstract::In order to clearly understand the intrinsic microwave absorption properties of carbon nanomaterials, we proposed an efficient strategy to synthesize high purity metal-free carbon nanotubes (CNTs) over water-soluble K2CO3 particles through chemical vapor decomposition and water-washing process. The comparison results ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28310

    authors: Qi X,Xu J,Hu Q,Deng Y,Xie R,Jiang Y,Zhong W,Du Y

    更新日期:2016-06-21 00:00:00

  • Dexmedetomidine Inhibits TLR4/NF-κB Activation and Reduces Acute Kidney Injury after Orthotopic Autologous Liver Transplantation in Rats.

    abstract::Patients who undergo orthotopic liver transplantation often sustain acute kidney injury(AKI). The toll-like receptor 4(TLR4)/Nuclear factor-кB(NF-кB) pathway plays a role in AKI. Dexmedetomidine(Dex) has been shown to attenuate AKI. The current study aimed to determine whether liver transplantation-induced AKI is asso...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16849

    authors: Yao H,Chi X,Jin Y,Wang Y,Huang P,Wu S,Xia Z,Cai J

    更新日期:2015-11-20 00:00:00

  • The application of homemade Neosinocalamus affinis AC in electrokinetic removal technology on heavy metal removal from the MSWI fly ash.

    abstract::This present paper was focused on the manufacture of activated carbon (AC) and its application in the electrokinetic remediation (EKR) technology on removal of the heavy metals (HMs) from the municipal solid waste incineration fly ash. AC was produced from Neosinocalamus affinis (NF) by chemical activation with H3PO4 ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39312

    authors: Liu K,Huang T,Huang X,Yu L,Muhammad F,Jiao B,Li D

    更新日期:2016-12-21 00:00:00

  • Drosophila taste neurons as an agonist-screening platform for P2X receptors.

    abstract::The P2X receptor family of ATP-gated cation channels are attractive drug targets for pain and inflammatory disease, but no subtype-selective agonists, and few partially selective agonists have been described to date. As proof-of-concept for the discovery of novel P2X receptor agonists, here we demonstrate the use of D...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65169-9

    authors: Grimes L,Griffiths J,Pasqualetto G,Brancale A,Kemp PJ,Young MT,van der Goes van Naters W

    更新日期:2020-05-19 00:00:00

  • Conserved gene regulation during acute inflammation between zebrafish and mammals.

    abstract::Zebrafish (Danio rerio), largely used as a model for studying developmental processes, has also emerged as a valuable system for modelling human inflammatory diseases. However, in a context where even mice have been questioned as a valid model for these analysis, a systematic study evaluating the reproducibility of hu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41905

    authors: Forn-Cuní G,Varela M,Pereiro P,Novoa B,Figueras A

    更新日期:2017-02-03 00:00:00

  • Silibinin, A Natural Blend In Polytherapy Formulation For Targeting Cd44v6 Expressing Colon Cancer Stem Cells.

    abstract::Colon cancer stem cells have been attributed to poor prognosis, therapeutic resistance and aggressive nature of the malignancy. Recent reports associated CD44v6 expression with relapse, metastasis and reduced 5-year survival of colon cancer patients, thereby making it a potential therapeutic target. Thus, in this stud...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35069-0

    authors: Patel S,Waghela B,Shah K,Vaidya F,Mirza S,Patel S,Pathak C,Rawal R

    更新日期:2018-11-19 00:00:00

  • Auditory Steady State Response; nature and utility as a translational science tool.

    abstract::The auditory steady-state response (ASSR) has been used to detect auditory processing deficits in patients with psychiatric disorders. However, the methodology of ASSR recording from the brain surface has not been standardized in preclinical studies, limiting its use as a translational biomarker. The sites of maximal ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44936-3

    authors: Kozono N,Honda S,Tada M,Kirihara K,Zhao Z,Jinde S,Uka T,Yamada H,Matsumoto M,Kasai K,Mihara T

    更新日期:2019-06-11 00:00:00

  • Use of Zebrafish Larvae as a Multi-Endpoint Platform to Characterize the Toxicity Profile of Silica Nanoparticles.

    abstract::Nanomaterials are being extensively produced and applied in society. Human and environmental exposures are, therefore, inevitable and so increased attention is being given to nanotoxicity. While silica nanoparticles (NP) are one of the top five nanomaterials found in consumer and biomedical products, their toxicity pr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37145

    authors: Pham DH,De Roo B,Nguyen XB,Vervaele M,Kecskés A,Ny A,Copmans D,Vriens H,Locquet JP,Hoet P,de Witte PA

    更新日期:2016-11-22 00:00:00

  • Azolla pinnata, Aspergillus terreus and Eisenia fetida for enhancing agronomic value of paddy straw.

    abstract::In the present study rice straw (R, control) was mixed with Cowdung (C), Azolla (A) and cellulolytic fungus Aspergillus terreus (F) in different combinations viz. RC, RA, RF, RCF, RCA, RFA and RCFA and subjected to aerobic composting (Acom) and vermicomposting (Vcom - with Eisenia fetida). It was found that addition o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-37880-1

    authors: Arora M,Kaur A

    更新日期:2019-02-04 00:00:00

  • Buoyancy effects on the radiative magneto Micropolar nanofluid flow with double stratification, activation energy and binary chemical reaction.

    abstract::A mathematical model has been developed to examine the magneto hydrodynamic micropolar nanofluid flow with buoyancy effects. Flow analysis is carried out in the presence of nonlinear thermal radiation and dual stratification. The impact of binary chemical reaction with Arrhenius activation energy is also considered. A...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13140-6

    authors: Ramzan M,Ullah N,Chung JD,Lu D,Farooq U

    更新日期:2017-10-10 00:00:00

  • Kv1.3 activity perturbs the homeostatic properties of astrocytes in glioma.

    abstract::Glial cells actively maintain the homeostasis of brain parenchyma, regulating neuronal excitability and preserving the physiological composition of the extracellular milieu. Under pathological conditions, some functions of glial cells could be compromised, exacerbating the neurotoxic processes. We investigated if the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-25940-5

    authors: Grimaldi A,D'Alessandro G,Di Castro MA,Lauro C,Singh V,Pagani F,Sforna L,Grassi F,Di Angelantonio S,Catacuzzeno L,Wulff H,Limatola C,Catalano M

    更新日期:2018-05-16 00:00:00

  • Acute and chronic mitochondrial respiratory chain deficiency differentially regulate lysosomal biogenesis.

    abstract::Mitochondria are key cellular signaling platforms, affecting fundamental processes such as cell proliferation, differentiation and death. However, it remains unclear how mitochondrial signaling affects other organelles, particularly lysosomes. Here, we demonstrate that mitochondrial respiratory chain (RC) impairments ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45076

    authors: Fernández-Mosquera L,Diogo CV,Yambire KF,Santos GL,Luna Sánchez M,Bénit P,Rustin P,Lopez LC,Milosevic I,Raimundo N

    更新日期:2017-03-27 00:00:00

  • Quantum interference induced photon blockade in a coupled single quantum dot-cavity system.

    abstract::We propose an experimental scheme to implement a strong photon blockade with a single quantum dot coupled to a nanocavity. The photon blockade effect can be tremendously enhanced by driving the cavity and the quantum dot simultaneously with two classical laser fields. This enhancement of photon blockade is ascribed to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09252

    authors: Tang J,Geng W,Xu X

    更新日期:2015-03-18 00:00:00

  • Glycol Derived Carbon- TiO2 as Low Cost and High Performance Anode Material for Sodium-Ion Batteries.

    abstract::Carbon coated TiO2 (TiO2@C) is fabricated by a convenient and green one-pot solvothermal method, in which ethylene glycol serve as both the reaction medium and carbon source without the addition of any other carbon additives. During the solvothermal process, ethylene glycol polymerize and coordinate with Ti4+ to form ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43895

    authors: Tao H,Zhou M,Wang K,Cheng S,Jiang K

    更新日期:2017-03-03 00:00:00

  • Oblique scanning laser microscopy for simultaneously volumetric structural and molecular imaging using only one raster scan.

    abstract::Multi-modal three dimensional (3D) optical imaging combining both structural sensitivity and molecular specificity is highly desirable in biomedical research. In this paper, we present a method termed oblique scanning laser microscopy (OSLM) to combine optical coherence tomography (OCT), for simultaneously volumetric ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08822-0

    authors: Zhang L,Capilla A,Song W,Mostoslavsky G,Yi J

    更新日期:2017-08-17 00:00:00

  • Fibrin clots are equilibrium polymers that can be remodeled without proteolytic digestion.

    abstract::Fibrin polymerization is a necessary part of hemostasis but clots can obstruct blood vessels and cause heart attacks and strokes. The polymerization reactions are specific and controlled, involving strong knob-into-hole interactions to convert soluble fibrinogen into insoluble fibrin. It has long been assumed that clo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00879

    authors: Chernysh IN,Nagaswami C,Purohit PK,Weisel JW

    更新日期:2012-01-01 00:00:00

  • Metabolomics approach revealed robust changes in amino acid and biogenic amine signatures in patients with schizophrenia in the early course of the disease.

    abstract::The primary objective of this study was to evaluate how schizophrenia (SCH) spectrum disorders and applied antipsychotic (AP) treatment affect serum level of amino acids (AAs) and biogenic amines (BAs) in the early course of the disorder. We measured 21 different AAs and 10 BAs in a sample of antipsychotic (AP)-naïve ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71014-w

    authors: Parksepp M,Leppik L,Koch K,Uppin K,Kangro R,Haring L,Vasar E,Zilmer M

    更新日期:2020-08-19 00:00:00

  • Centuries of domestication has not impaired oviposition site-selection function in the silkmoth, Bombyx mori.

    abstract::Oviposition site-selection in insects is mediated through innate recognition templates (IRTs) tuned to specific chemical cues. These cues aid gravid insects in choosing suitable oviposition sites and may even enhance the fitness of their offspring by warding off predators and parasitoids. However, studies on the evolu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07472

    authors: Damodaram KJ,Kempraj V,Aurade RM,Rajasekhar SB,Venkataramanappa RK,Nandagopal B,Verghese A

    更新日期:2014-12-15 00:00:00

  • Traumatic Brain Injury Leads to Accelerated Atherosclerosis in Apolipoprotein E Deficient Mice.

    abstract::Traumatic brain injury (TBI) has been associated with atherosclerosis and cardiovascular mortality in humans. However the causal relationship between TBI and vascular disease is unclear. This study investigated the direct role of TBI on vascular disease using a murine model of atherosclerosis. Apolipoprotein E deficie...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23959-2

    authors: Wang J,Su E,Wang H,Guo C,Lawrence DA,Eitzman DT

    更新日期:2018-04-04 00:00:00

  • Three classes of ligands each bind to distinct sites on the orphan G protein-coupled receptor GPR84.

    abstract::Medium chain fatty acids can activate the pro-inflammatory receptor GPR84 but so also can molecules related to 3,3'-diindolylmethane. 3,3'-Diindolylmethane and decanoic acid acted as strong positive allosteric modulators of the function of each other and analysis showed the affinity of 3,3'-diindolylmethane to be at l...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18159-3

    authors: Mahmud ZA,Jenkins L,Ulven T,Labéguère F,Gosmini R,De Vos S,Hudson BD,Tikhonova IG,Milligan G

    更新日期:2017-12-20 00:00:00

  • Intravenous C16 and angiopoietin-1 improve the efficacy of placenta-derived mesenchymal stem cell therapy for EAE.

    abstract::The placenta has emerged as an attractive source of mesenchymal stem cells (MSCs) because of the absence of ethical issues, non-invasive access, and abundant yield. However, inflammatory cell invasion into grafts negatively impacts the survival and efficacy of transplanted cells. Previous studies have shown that synth...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22867-9

    authors: Tian KW,Zhang YY,Jiang H,Han S

    更新日期:2018-03-15 00:00:00