Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes.

Abstract:

:Despite the unique nature of endemic species, their origin and population history remain poorly studied. We investigated the population history of 28 coral reef fish species, close related, from the Gambier and Marquesas Islands, from five families, with range size varying from widespread to small-range endemic. We analyzed both mitochondrial and nuclear sequence data using neutrality test and Bayesian analysis (EBSP and ABC). We found evidence for demographic expansions for most species (24 of 28), irrespective of range size, reproduction strategy or archipelago. The timing of the expansions varied greatly among species, from 8,000 to 2,000,000 years ago. The typical hypothesis for reef fish that links population expansions to the Last Glacial Maximum fit for 14 of the 24 demographic expansions. We propose two evolutionary processes that could lead to expansions older than the LGM: (a) we are retrieving the signature of an old colonization process for widespread, large-range endemic and paleoendemic species or (b) speciation; the expansion reflects the birth of the species for neoendemic species. We show for the first time that the demographic histories of endemic and widespread reef fish are not distinctly different and suggest that a number of processes drive endemism.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Delrieu-Trottin E,Mona S,Maynard J,Neglia V,Veuille M,Planes S

doi

10.1038/srep40519

subject

Has Abstract

pub_date

2017-01-16 00:00:00

pages

40519

issn

2045-2322

pii

srep40519

journal_volume

7

pub_type

杂志文章
  • Dipeptidyl peptidase-4 inhibition prevents nonalcoholic steatohepatitis-associated liver fibrosis and tumor development in mice independently of its anti-diabetic effects.

    abstract::Nonalcoholic steatohepatitis (NASH) is a hepatic phenotype of the metabolic syndrome, and increases the risk of cirrhosis and hepatocellular carcinoma (HCC). Although increasing evidence points to the therapeutic implications of certain types of anti-diabetic agents in NASH, it remains to be elucidated whether their e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57935-6

    authors: Kawakubo M,Tanaka M,Ochi K,Watanabe A,Saka-Tanaka M,Kanamori Y,Yoshioka N,Yamashita S,Goto M,Itoh M,Shirakawa I,Kanai S,Suzuki H,Sawada M,Ito A,Ishigami M,Fujishiro M,Arima H,Ogawa Y,Suganami T

    更新日期:2020-01-22 00:00:00

  • Towards calibration-invariant spectroscopy using deep learning.

    abstract::The interaction between matter and electromagnetic radiation provides a rich understanding of what the matter is composed of and how it can be quantified using spectrometers. In many cases, however, the calibration of the spectrometer changes as a function of time (such as in electron spectrometers), or the absolute c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38482-1

    authors: Chatzidakis M,Botton GA

    更新日期:2019-02-14 00:00:00

  • Improving Photocatalytic Performance from Bi2WO6@MoS2/graphene Hybrids via Gradual Charge Transferred Pathway.

    abstract::The charge transfer from the main catalyst to the cocatalyst is a key factor to enhance catalytic activity for photocatalytic nanocomposite materials. In order to enhance the charge transfer between Bi2WO6 and graphene, we inlet MoS2 as a "stepping-stone" into Bi2WO6 and graphene. Here, we report an effective strategy...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03911-6

    authors: Liu M,Xue X,Yu S,Wang X,Hu X,Tian H,Chen H,Zheng W

    更新日期:2017-06-16 00:00:00

  • Ancestral mitochondrial N lineage from the Neolithic 'green' Sahara.

    abstract::Because Africa's climate hampers DNA preservation, knowledge of its genetic variability is mainly restricted to modern samples, even though population genetics dynamics and back-migrations from Eurasia may have modified haplotype frequencies, masking ancient genetic scenarios. Thanks to improved methodologies, ancient...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-39802-1

    authors: Vai S,Sarno S,Lari M,Luiselli D,Manzi G,Gallinaro M,Mataich S,Hübner A,Modi A,Pilli E,Tafuri MA,Caramelli D,di Lernia S

    更新日期:2019-03-05 00:00:00

  • Magnetic Properties Improvement of Die-upset Nd-Fe-B Magnets by Dy-Cu Press Injection and Subsequent Heat Treatment.

    abstract::Ultrafine-grained die-upset Nd-Fe-B magnets are of importance because they provide a wide researching space to redesign the textured structures. Here is presented a route to obtain a new die-upset magnet with substantially improved magnetic properties. After experiencing the optimized heat treatment, both the coercivi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38335

    authors: Wang Z,Ju J,Wang J,Yin W,Chen R,Li M,Jin C,Tang X,Lee D,Yan A

    更新日期:2016-12-06 00:00:00

  • Mechanisms shaping size structure and functional diversity of phytoplankton communities in the ocean.

    abstract::The factors regulating phytoplankton community composition play a crucial role in structuring aquatic food webs. However, consensus is still lacking about the mechanisms underlying the observed biogeographical differences in cell size composition of phytoplankton communities. Here we use a trait-based model to disenta...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08918

    authors: Acevedo-Trejos E,Brandt G,Bruggeman J,Merico A

    更新日期:2015-03-09 00:00:00

  • Changes in motor behavior, neuropathology, and gut microbiota of a Batten disease mouse model following administration of acidified drinking water.

    abstract::CLN3 mutations cause the fatal neurodegenerative disorder, CLN3 Batten disease. The Cln3-/- mouse model displays characteristic features of the human disease including motor deficits. When mice received acidified drinking water (pH 2.5-2.9) instead of normal tap water (pH 8.4) for several generations, the motor skills...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51488-z

    authors: Johnson TB,Langin LM,Zhao J,Weimer JM,Pearce DA,Kovács AD

    更新日期:2019-10-18 00:00:00

  • Epidural Dexmedetomidine Reduces the Requirement of Propofol during Total Intravenous Anaesthesia and Improves Analgesia after Surgery in Patients undergoing Open Thoracic Surgery.

    abstract::The aim of this study was to assess the systemic and analgesic effects of epidural dexmedetomidine in thoracic epidural anaesthesia (TEA) combined with total intravenous anaesthesia during thoracic surgery. Seventy-one patients undergoing open thoracotomy were included in this study and randomly divided into three gro...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-017-04382-5

    authors: Zeng X,Jiang J,Yang L,Ding W

    更新日期:2017-06-21 00:00:00

  • Causal relevance of circulating high-density lipoprotein cholesterol with cancer: a Mendelian randomization meta-analysis.

    abstract::We summarized published data on the associations of apolipoprotein E (APOE) gene ε2/ε3/ε4 polymorphism with both cancer risk and circulating lipid profiles, aiming to examine the causal relevance between lipids and cancer risk. Article identification and data abstraction were conducted in duplicate and independently b...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/srep09495

    authors: Yang C,Tian G,Mi J,Wei X,Li X,Li X,Wang W,Wang B

    更新日期:2015-03-30 00:00:00

  • Hyperspectral imaging using the single-pixel Fourier transform technique.

    abstract::Hyperspectral imaging technology is playing an increasingly important role in the fields of food analysis, medicine and biotechnology. To improve the speed of operation and increase the light throughput in a compact equipment structure, a Fourier transform hyperspectral imaging system based on a single-pixel technique...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45209

    authors: Jin S,Hui W,Wang Y,Huang K,Shi Q,Ying C,Liu D,Ye Q,Zhou W,Tian J

    更新日期:2017-03-24 00:00:00

  • Rapid, cool sintering of wet processed yttria-stabilized zirconia ceramic electrolyte thin films.

    abstract::Here we report a photonic annealing process for yttria-stabilized zirconia films, which are one of the most well-known solid-state electrolytes for solid oxide fuel cells (SOFCs). Precursor films were coated using a wet-chemical method with a simple metal-organic precursor solution and directly annealed at standard pr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12438-9

    authors: Park JS,Kim DJ,Chung WH,Lim Y,Kim HS,Kim YB

    更新日期:2017-09-29 00:00:00

  • Petri Net computational modelling of Langerhans cell Interferon Regulatory Factor Network predicts their role in T cell activation.

    abstract::Langerhans cells (LCs) are able to orchestrate adaptive immune responses in the skin by interpreting the microenvironmental context in which they encounter foreign substances, but the regulatory basis for this has not been established. Utilising systems immunology approaches combining in silico modelling of a reconstr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00651-5

    authors: Polak ME,Ung CY,Masapust J,Freeman TC,Ardern-Jones MR

    更新日期:2017-04-06 00:00:00

  • Phosphodiesterase 4B negatively regulates endotoxin-activated interleukin-1 receptor antagonist responses in macrophages.

    abstract::Activation of TLR4 by lipopolysaccharide (LPS) induces both pro-inflammatory and anti-inflammatory cytokine production in macrophages. Type 4 phosphodiesterases (PDE4) are key cAMP-hydrolyzing enzymes, and PDE4 inhibitors are considered as immunosuppressors to various inflammatory responses. We demonstrate here that P...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46165

    authors: Yang JX,Hsieh KC,Chen YL,Lee CK,Conti M,Chuang TH,Wu CP,Jin SC

    更新日期:2017-04-06 00:00:00

  • Superresolution microscopy reveals distinct localisation of full length IRSp53 and its I-BAR domain protein within filopodia.

    abstract::Superresolution microscopy offers the advantage of imaging biological structures within cells at the nano-scale. Here we apply two superresolution microscopy techniques, specifically 3D structured illumination microscopy (3D-SIM) and direct stochastic optical reconstruction microscopy (dSTORM), a type of single molecu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38851-w

    authors: Sudhaharan T,Hariharan S,Lim JSY,Liu JZ,Koon YL,Wright GD,Chiam KH,Ahmed S

    更新日期:2019-02-21 00:00:00

  • Reassignment of scattered emission photons in multifocal multiphoton microscopy.

    abstract::Multifocal multiphoton microscopy (MMM) achieves fast imaging by simultaneously scanning multiple foci across different regions of specimen. The use of imaging detectors in MMM, such as CCD or CMOS, results in degradation of image signal-to-noise-ratio (SNR) due to the scattering of emitted photons. SNR can be partly ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05153

    authors: Cha JW,Singh VR,Kim KH,Subramanian J,Peng Q,Yu H,Nedivi E,So PT

    更新日期:2014-06-05 00:00:00

  • Non-destructive elemental analysis of a carbonaceous chondrite with direct current Muon beam at MuSIC.

    abstract::Electron- or X-ray-induced characteristic X-ray analysis has been widely used to determine chemical compositions of materials in vast research fields. In recent years, analysis of characteristic X-rays from muonic atoms, in which a muon is captured, has attracted attention because both a muon beam and a muon-induced c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15719-5

    authors: Terada K,Sato A,Ninomiya K,Kawashima Y,Shimomura K,Yoshida G,Kawai Y,Osawa T,Tachibana S

    更新日期:2017-11-13 00:00:00

  • Detection of replicative Kashmir Bee Virus and Black Queen Cell Virus in Asian hornet Vespa velutina (Lepelieter 1836) in Italy.

    abstract::Information concerning the pathogenic role of honey bee viruses in invasive species are still scarce. The aim of this investigation was to assess the presence of several honey bee viruses, such as Black Queen Cell Virus (BQCV), Kashmir Bee Virus (KBV), Slow Paralysis Virus (SPV), Sac Brood Virus (SBV), Israeli Acute P...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46565-2

    authors: Mazzei M,Cilia G,Forzan M,Lavazza A,Mutinelli F,Felicioli A

    更新日期:2019-07-12 00:00:00

  • Creatine kinase inhibits ADP-induced platelet aggregation.

    abstract::Bleeding risk with antiplatelet therapy is an increasing clinical challenge. However, the inter-individual variation in this risk is poorly understood. We assessed whether the level of plasma creatine kinase, the enzyme that utilizes ADP and phosphocreatine to rapidly regenerate ATP, may modulate bleeding risk through...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06551

    authors: Horjus DL,Nieuwland R,Boateng KB,Schaap MC,van Montfrans GA,Clark JF,Sturk A,Brewster LM

    更新日期:2014-10-09 00:00:00

  • A novel P300 BCI speller based on the Triple RSVP paradigm.

    abstract::A brain-computer interface (BCI) is an advanced human-machine interaction technology. The BCI speller is a typical application that detects the stimulated source-induced EEG signal to identify the expected characters of the subjects. The current mainstream matrix-based BCI speller involves two problems that remain uns...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21717-y

    authors: Lin Z,Zhang C,Zeng Y,Tong L,Yan B

    更新日期:2018-02-20 00:00:00

  • Resting-state fMRI study on drug-naive patients of essential tremor with and without head tremor.

    abstract::This study used resting-state functional MRI (r-fMRI) to evaluate intrinsic brain activity in drug-naive patients with essential tremor (ET) with and without head tremor. We enrolled 20 patients with ET with hand and head tremor (h-ET), 27 patients with ET without head tremor (a-ET), and 27 healthy controls (HCs). All...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28778-z

    authors: Wang L,Lei D,Suo X,Li N,Lu Z,Li J,Peng J,Gong Q,Peng R

    更新日期:2018-07-12 00:00:00

  • Development and Characterization of a Benchtop Corneal Puncture Injury Model.

    abstract::During recent military operations, eye-related injuries have risen in frequency due to increased use of explosive weaponry which often result in corneal puncture injuries. These have one of the poorest visual outcomes for wounded soldiers, often resulting in blindness due to the large variations in injury shape, size,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61079-y

    authors: Snider EJ,Cornell LE,Acevedo JM,Gross B,Edsall PR,Lund BJ,Zamora DO

    更新日期:2020-03-06 00:00:00

  • PDZ interaction of Vangl2 links PSD-95 and Prickle2 but plays only a limited role in the synaptic localisation of Vangl2.

    abstract::Postsynaptic density-95/Discs large/Zonula occludens-1 (PDZ) domain-mediated protein interactions play pivotal roles in various molecular biological events, including protein localisation, assembly, and signal transduction. Although the vertebrate regulator of planar cell polarity Van Gogh-like 2 (Vangl2) was recently...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12916

    authors: Nagaoka T,Tabuchi K,Kishi M

    更新日期:2015-08-10 00:00:00

  • 18F-THK5351 PET imaging in patients with progressive supranuclear palsy: associations with core domains and diagnostic certainty.

    abstract::The associations of 18F-THK5351 tau positron emission tomography (PET) findings with core domains of progressive supranuclear palsy (PSP) and its diagnostic certainty have yet to be fully elucidated. The 18F-THK5351 PET patterns of 17 patients with PSP (68.9 ± 6.5 years; 8 women) were compared with those observed in 2...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76339-0

    authors: Hsu JL,Chen SH,Hsiao IT,Lu CS,Yen TC,Okamura N,Lin KJ,Weng YH

    更新日期:2020-11-10 00:00:00

  • Preclinical evaluation of local prolonged release of paclitaxel from gelatin microspheres for the prevention of recurrence of peritoneal carcinomatosis in advanced ovarian cancer.

    abstract::Patients with advanced ovarian cancer develop recurrence despite initial treatment response to standard treatment of surgery and intravenous/intraperitoneal (IP) chemotherapy, partly due to a limited peritoneal exposure time of chemotherapeutics. Paclitaxel-loaded genipin-crosslinked gelatin microspheres (PTX-GP-MS) a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51419-y

    authors: De Clercq K,Xie F,De Wever O,Descamps B,Hoorens A,Vermeulen A,Ceelen W,Vervaet C

    更新日期:2019-10-16 00:00:00

  • Redox balance, metabolic fingerprint and physiological characterization in contrasting North East Indian rice for Aluminum stress tolerance.

    abstract::Aluminum (Al) toxicity is a serious problem for rice crop productivity in acidic soils worldwide. The present work was conducted to look out for the alteration in ROS homeostasis; metabolic fingerprint; and morphology in two contrasting Indica rice cultivars of North East India (NE India) to Al toxicity. Al stress led...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45158-3

    authors: Awasthi JP,Saha B,Panigrahi J,Yanase E,Koyama H,Panda SK

    更新日期:2019-06-18 00:00:00

  • Mutation of regulatory phosphorylation sites in PFKFB2 worsens renal fibrosis.

    abstract::Fatty acid oxidation is the major energy pathway used by the kidney, although glycolysis becomes more important in the low oxygen environment of the medulla. Fatty acid oxidation appears to be reduced in renal fibrosis, and drugs that reverse this improve fibrosis. Expression of glycolytic genes is more variable, but ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71475-z

    authors: Lee M,Harley G,Katerelos M,Gleich K,Sullivan MA,Laskowski A,Coughlan M,Fraser SA,Mount PF,Power DA

    更新日期:2020-09-03 00:00:00

  • Direct observation of melting in a two-dimensional driven granular system.

    abstract::Melting is considered to be one of the most fundamental problems in physical science. Generally, dimensionality plays an important role in melting. In three-dimension, it's well known that a crystal melts directly into a liquid via a first-order transition. In two-dimension (2D), however, the melting process has been ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24056

    authors: Sun X,Li Y,Ma Y,Zhang Z

    更新日期:2016-04-07 00:00:00

  • Rapid histopathological imaging of skin and breast cancer surgical specimens using immersion microscopy with ultraviolet surface excitation.

    abstract::Rapid histopathological evaluation of fresh, unfixed human tissue using optical sectioning microscopy would have applications to intraoperative surgical margin assessment. Microscopy with ultraviolet surface excitation (MUSE) is a low-cost optical sectioning technique using ultraviolet illumination which limits fluore...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22264-2

    authors: Yoshitake T,Giacomelli MG,Quintana LM,Vardeh H,Cahill LC,Faulkner-Jones BE,Connolly JL,Do D,Fujimoto JG

    更新日期:2018-03-14 00:00:00

  • Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

    abstract::The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu) offers interactive visualization and exploration of TCGA genomic, phenotypic, and clinical data, as produced by the Cancer Genome Atlas Research Network. Researchers can explore the impact of genomic alterations on phenotypes by visualizing gene and pro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02652

    authors: Cline MS,Craft B,Swatloski T,Goldman M,Ma S,Haussler D,Zhu J

    更新日期:2013-10-02 00:00:00

  • Penetration-enhancement underlies synergy of plant essential oil terpenoids as insecticides in the cabbage looper, Trichoplusia ni.

    abstract::Many plant essential oils and their terpenoid constituents possess bioactivities including insecticidal activity, and they sometimes act synergistically when mixed. Although several hypotheses for this have been proposed, the underlying mechanism has not been fully elucidated thus far. In the present study, we report ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42432

    authors: Tak JH,Isman MB

    更新日期:2017-02-09 00:00:00