Analyzing pathogen suppressiveness in bioassays with natural soils using integrative maximum likelihood methods in R.

abstract：Background:Cytoplasmic male sterility (CMS) is a common phenotype in higher plants, that is often associated with rearrangements in mitochondrial DNA (mtDNA), and is widely used to produce hybrid seeds in a variety of valuable crop species. Investigation of the CMS phenomenon promotes understanding of fundamental issue...

journal_title：PeerJ

authors： Makarenko MS,Kornienko IV,Azarin KV,Usatov AV,Logacheva MD,Markin NV,Gavrilova VA

更新日期：2018-07-23 00:00:00

abstract：:Trihelix transcription factors play multiple roles in plant growth, development and various stress responses. In this study, we identified 71 trihelix family genes in the soybean genome. These trihelix genes were located at 19 out of 20 soybean chromosomes unevenly and were classified into six distinct subfamilies: GT...

journal_title：PeerJ

authors： Liu W,Zhang Y,Li W,Lin Y,Wang C,Xu R,Zhang L

更新日期：2020-03-13 00:00:00

abstract：:Over the last decades several studies have identified that the directional changes in climate induced by anthropogenic emissions of greenhouse gases are affecting the ecology of desert ecosystems. In the Southwest United States, the impacts of climate change to plant abundance and distribution have already been report...

journal_title：PeerJ

authors： Albuquerque F,Benito B,Rodriguez MÁM,Gray C

更新日期：2018-09-19 00:00:00

abstract：:Wildlife demography is typically studied at a single point in time within a year when species, often during the reproductive season, are more active and therefore easier to find. However, this provides only a low-resolution glimpse into demographic temporal patterns over time and may hamper a more complete understandi...

journal_title：PeerJ

authors： Guimarães M,Correa DT,Gaiarsa MP,Kéry M

更新日期：2020-02-25 00:00:00

abstract：:Antibiotic resistance in our pathogens is medicine's climate change: caused by human activity, and resulting in more extreme outcomes. Resistance emerges in microbial populations when antibiotics act on phenotypic variance within the population. This can arise from either genotypic diversity (resulting from a mutation...

journal_title：PeerJ

authors： Kurenbach B,Hill AM,Godsoe W,van Hamelsveld S,Heinemann JA

更新日期：2018-10-12 00:00:00

abstract：:Hepatocellular carcinoma (HCC) is one of the most heterogeneous malignant cancers with no effective targets and treatments. However, the molecular pathogenesis of HCC remains largely uncertain. The aims of our study were to find crucial genes involved in HCC through multidimensional methods and revealed potential mole...

journal_title：PeerJ

authors： Liu ZK,Zhang RY,Yong YL,Zhang ZY,Li C,Chen ZN,Bian H

更新日期：2019-08-08 00:00:00

abstract：:Marine biodiversity and derived ecosystem services are critical to the healthy functioning of marine ecosystems, and to human economic and societal well-being. Thus, an understanding of marine biodiversity in different ecosystems is necessary for their conservation and management. Coral reefs in particular are noted f...

journal_title：PeerJ

authors： Reimer JD,Biondi P,Lau YW,Masucci GD,Nguyen XH,Santos MEA,Wee HB

更新日期：2019-04-12 00:00:00

abstract：Background:In the predator-sea urchin-macrophyte trophic cascade, the ecological effect of sea urchins as grazers depends both on their density and the changes in foraging activity, which are influenced by various disturbing factors. However, the complete duration of the alarm reactions of echinoids has not been studie...

journal_title：PeerJ

authors： Zhadan PM,Vaschenko MA

更新日期：2019-11-22 00:00:00

abstract：:Tyrosine phosphorylation has emerged as an important regulator of plasma membrane-localized immune receptors activity. Here, we investigate the role of tyrosine phosphorylation in the regulation of rice XANTHOMONAS RESISTANCE 21 (XA21)-mediated immunity. We demonstrate that the juxtamembrane and kinase domain of Esche...

journal_title：PeerJ

authors： Caddell DF,Wei T,Sharma S,Oh MH,Park CJ,Canlas P,Huber SC,Ronald PC

更新日期：2018-12-11 00:00:00

abstract：BACKGROUND:Individuals with unilateral lower limb amputation have a high risk of developing knee osteoarthritis (OA) in their intact limb as they age. This risk may be related to joint loading experienced earlier in life. We hypothesized that loading during walking would be greater in the intact limb of young US milita...

journal_title：PeerJ

authors： Miller RH,Krupenevich RL,Pruziner AL,Wolf EJ,Schnall BL

更新日期：2017-02-02 00:00:00

abstract：:Grazing and litter removal can alter understory structure and composition after afforestation, posing a serious threat to sustainable forest development. Enclosure is considered to be an effective measure to restore degraded forest restoration. However, little is known about the dynamics of soil nutrients and microbia...

journal_title：PeerJ

authors： Deng J,Zhou Y,Zhu W,Yin Y

更新日期：2020-03-25 00:00:00

abstract：:The p53 activation is induced by stressors, such as DNA damage, oxidative stress, and activated oncogenes, and can promote cell cycle arrest, cellular senescence, and apoptosis. The large yellow croaker (Larimichthys crocea) is an important warm temperate marine fish in the Chinese aquiculture industry. However, few s...

journal_title：PeerJ

authors： Qian B,Qi X,Bai Y,Wu Y

更新日期：2020-12-18 00:00:00

abstract：Background:Inflammatory bowel diseases are associated with remodeling of neuronal circuitries within the enteric nervous system, occurring also at sites distant from the acute site of inflammation and underlying disturbed intestinal functions. Homeoproteins orthodenticle OTX1 and OTX2 are neuronal transcription factors...

journal_title：PeerJ

authors： Bistoletti M,Micheloni G,Baranzini N,Bosi A,Conti A,Filpa V,Pirrone C,Millefanti G,Moro E,Grimaldi A,Valli R,Baj A,Crema F,Giaroni C,Porta G

更新日期：2020-02-13 00:00:00

abstract：:Five tropical seaweeds, Kappaphycus alvarezii (Doty) Doty ex P.C. Silva, Padina australis Hauck, Sargassum binderi Sonder ex J. Agardh (syn. S. aquifolium (Turner) C. Agardh), Sargassum siliquosum J. Agardh and Turbinaria conoides (J. Agardh) Kützing, were incubated in seawater of pH 8.0, 7.8 (ambient), 7.6, 7.4 and 7...

journal_title：PeerJ

authors： Mithoo-Singh PK,Keng FS,Phang SM,Leedham Elvidge EC,Sturges WT,Malin G,Abd Rahman N

更新日期：2017-01-25 00:00:00

abstract：:Due to varietal differences, diminutive size, and similar morphological characters, it is difficult to classify and identify Liriomyza spp., a genus comprised of economically-important, highly-polyphagous insect pests. In this study, we reconfirmed the morphological characteristics of three closely-related invasive le...

journal_title：PeerJ

authors： Chang YW,Chen JY,Zheng SZ,Gao Y,Chen Y,Deng Y,Du YZ

更新日期：2020-10-30 00:00:00

abstract：BACKGROUND:The practice of feeding of diets containing raw animal products (RAP) to pets (dogs and cats) is discouraged by veterinary organizations and governmental public health organizations. Nevertheless, the practice of feeding RAP to pets is increasing in popularity. Pet owner motivations for feeding RAP diets to ...

journal_title：PeerJ

authors： Morgan SK,Willis S,Shepherd ML

更新日期：2017-03-02 00:00:00

abstract：:A new p-terphenyl derivative 4″-deoxy-2'-methoxyterphenyllin (1), along with six known p-terphenyl derivatives (2-7), a known flavonoid derivative dechlorochlorflavonin (8) and a known fellutanine A (9), were isolated from the insect-derived strain of the fungus Aspergillus candidus Bdf-2, associated with Blaptica dub...

journal_title：PeerJ

authors： Shan T,Wang Y,Wang S,Xie Y,Cui Z,Wu C,Sun J,Wang J,Mao Z

更新日期：2020-01-02 00:00:00

abstract：:The mature spermatozoa of Stephanostomum murielae and Stephanostomoides tenuis are described by transmission electron microscopy. They present several ultrastructural features previously reported in other digeneans. Their spermatozoa possess two axonemes of different length showing the 9 + '1' trepaxonematan pattern, ...

journal_title：PeerJ

authors： Bakhoum AJ,Quilichini Y,Justine JL,Bray RA,Bâ CT,Marchand B

更新日期：2015-02-12 00:00:00

abstract：Background:The problem of access to medical information, particularly in low-income countries, has been under discussion for many years. Although a number of developments have occurred in the last decade (e.g., the open access (OA) movement and the website Sci-Hub), everyone agrees that these difficulties still persist...

journal_title：PeerJ

authors： Boudry C,Alvarez-Muñoz P,Arencibia-Jorge R,Ayena D,Brouwer NJ,Chaudhuri Z,Chawner B,Epee E,Erraïs K,Fotouhi A,Gharaibeh AM,Hassanein DH,Herwig-Carl MC,Howard K,Kaimbo Wa Kaimbo D,Laughrea PA,Lopez FA,Machin-Mastromatteo

更新日期：2019-10-30 00:00:00

abstract：BACKGROUND:Assessing psychological pain has been recommended as an integral part of a comprehensive suicide risk assessment. The Psychache Scale, an established measure of psychological pain, does not specify a time frame for when pain is experienced, which may inadvertently increase the likelihood of identifying indiv...

journal_title：PeerJ

authors： Meerwijk EL,Weiss SJ

更新日期：2017-06-22 00:00:00

abstract：Background:Ecosystem engineers are species that transform habitats in ways that influence other species.While the impacts of many engineers have been well described, our understanding of how their impact varies along environmental gradients remains limited. Although disentangling the effects of gradients and engineers ...

journal_title：PeerJ

authors： Costa AN,Bruna EM,Vasconcelos HL

更新日期：2018-10-09 00:00:00

abstract：:Vitellogenin has been proposed to regulate division of labor and social organization in social insects. The red imported fire ant (Solenopsis invicta) harbors four distinct, adjacent vitellogenin genes (Vg1, Vg2, Vg3, and Vg4). Contrary to honey bees that have a single Vg ortholog as well as potentially fertile nurses...

journal_title：PeerJ

authors： Hawkings C,Tamborindeguy C

更新日期：2018-05-28 00:00:00

abstract：:The shifting baseline syndrome describes a gradual lowering of human cognitive baselines, as each generation accepts a lower standard of resource abundance or size as the new norm. There is strong empirical evidence of declining trends of abundance and body sizes of marine fish species reported from docks and markets....

journal_title：PeerJ

authors： Francis FT,Howard BR,Berchtold AE,Branch TA,Chaves LCT,Dunic JC,Favaro B,Jeffrey KM,Malpica-Cruz L,Maslowski N,Schultz JA,Smith NS,Côté IM

更新日期：2019-02-15 00:00:00

abstract：:The decline in the number of hours Americans spend outdoors, exacerbated by urbanization, has affected people's familiarity with local wildlife. This is concerning to conservationists, as people tend to care about and invest in what they know. Children represent the future supporters of conservation, such that their k...

journal_title：PeerJ

authors： Schuttler SG,Stevenson K,Kays R,Dunn RR

更新日期：2019-07-23 00:00:00

abstract：:Cytokines are fundamental for a functioning immune system, and thus potentially serve as important indicators of animal health. Quantitation of mRNA using quantitative reverse transcription polymerase chain reaction (qRT-PCR) is an established immunological technique. It is particularly suitable for detecting the expr...

journal_title：PeerJ

authors： Tsai MA,Chen IH,Wang JH,Chou SJ,Li TH,Leu MY,Ho HK,Yang WC

更新日期：2017-09-27 00:00:00

abstract：Background:The coronavirus 19 (COVID-19) pandemic has heightened the threat to the health and lives of patients with comorbid diseases. Infection by COVID-19 is especially detrimental to patients on hemodialysis. In this study, we evaluated the clinical characteristics, laboratory findings, treatments and prognoses of ...

journal_title：PeerJ

authors： Luo Y,Li J,Liu Z,Yu H,Peng X,Cao C

更新日期：2020-11-26 00:00:00

abstract：Background:Cities face rapid changes leading to increasing inequalities and emerging public health issues that require cost-effective interventions. The urban exposome concept refers to the continuous monitoring of urban environmental and health indicators using the city and smaller intra-city areas as measurement unit...

journal_title：PeerJ

authors： Andrianou XD,van der Lek C,Charisiadis P,Ioannou S,Fotopoulou KN,Papapanagiotou Z,Botsaris G,Beumer C,Makris KC

更新日期：2019-05-24 00:00:00

abstract：:The Cuatro Ciénegas Basin (CCB) comprises several oligotrophic aquatic ecosystems limited by phosphorus. These aquatic systems are dominated by a high prokaryotic diversity, shaped by the stress of low nutrient supplies and interspecific competition. Although fungi constitute a diverse and important component of micro...

journal_title：PeerJ

authors： Velez P,Gasca-Pineda J,Rosique-Gil E,Eguiarte LE,Espinosa-Asuar L,Souza V

更新日期：2016-06-02 00:00:00

abstract：:Background. Pollinators, which provide the agriculturally and ecologically essential service of pollination, are under threat at a global scale. Habitat loss and homogenisation, pesticides, parasites and pathogens, invasive species, and climate change have been identified as past and current threats to pollinators. Ac...

journal_title：PeerJ

authors： Brown MJ,Dicks LV,Paxton RJ,Baldock KC,Barron AB,Chauzat MP,Freitas BM,Goulson D,Jepsen S,Kremen C,Li J,Neumann P,Pattemore DE,Potts SG,Schweiger O,Seymour CL,Stout JC

更新日期：2016-08-09 00:00:00

abstract：:Earthworms enrich the soil and protect the health of their ecological environment. Previous studies on these invertebrates determined their protein content, hormone secretions, medicinal value, and ecological habits, but their whole genomic sequence remains incomplete. We performed whole genome sequencing of Metaphire...

journal_title：PeerJ

authors： Jin F,Zhou Z,Guo Q,Liang Z,Yang R,Jiang J,He Y,Zhao Q,Zhao Q

更新日期：2020-11-12 00:00:00