Characterization of folding intermediates during urea-induced denaturation of human carbonic anhydrase II.

Abstract:

:Knowledge of folding/unfolding pathway is fundamental basis to study protein structure and stability. Human carbonic anhydrase II (HCAII) is a ∼29kDa, β-sheet dominated monomeric protein of 259 amino acid residues. In the present study, the urea-induced denaturation of HCAII was carried out which was a tri-phasic process, i.e., N (native) ↔ XI ↔ XII ↔ D (denatured) with stable intermediates XI and XII populated around 2 and 4M urea, respectively. The far-UV CD was used to characterize the intermediate states (XI and XII) for secondary structural content, near-UV CD for tertiary structure, dynamic light scattering for hydrodynamic radius and ANS fluorescence spectroscopy for the presence of exposed hydrophobic patches. Based on these experiments, we concluded that urea-induced XI state has characteristics of molten globule state while XII state bears characteristics features of pre-molten globule state. Characterization of the intermediates on the folding pathway will contribute to a deeper understanding of the structure-function relationship of HCAII. Furthermore, this system may provide an excellent model to study urea stress and the strategies adopted by the organisms to combat such a stress.

journal_name

Int J Biol Macromol

authors

Wahiduzzaman,Dar MA,Haque MA,Idrees D,Hassan MI,Islam A,Ahmad F

doi

10.1016/j.ijbiomac.2016.10.073

subject

Has Abstract

pub_date

2017-02-01 00:00:00

pages

881-887

eissn

0141-8130

issn

1879-0003

pii

S0141-8130(16)32117-1

journal_volume

95

pub_type

杂志文章
  • Supramolecular structure and pasting/digestion behaviors of rice starches following concurrent microwave and heat moisture treatment.

    abstract::From a supramolecular structure viewpoint, we concern how concurrent microwave and heat moisture treatment (M/HMT) tailors the pasting and digestion features of indica rice starch (IRS) and waxy rice starch (WRS), using combined analytical methods such as scanning electron microscopy and small-angle X-ray scattering. ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.05.189

    authors: Guo Y,Xu T,Li N,Cheng Q,Qiao D,Zhang B,Zhao S,Huang Q,Lin Q

    更新日期:2019-08-15 00:00:00

  • Super and selective adsorption of cationic dyes using carboxylate-modified lignosulfonate by environmentally friendly solvent-free esterification.

    abstract::Herein, following the strategy of sustainable, environment protection, circular economy development, carboxylate-modification lignosulfonate polymer (M-LSP) was synthesized from lignosulfonate by solvent-free esterifying with maleic anhydride (MA) by one step, and was used to remove the dyes by adsorption. FT-IR and X...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.05.037

    authors: Tang Y,Lin T,Ai S,Li Y,Zhou R,Peng Y

    更新日期:2020-09-15 00:00:00

  • Effect of high energy ball milling on organic pollutant adsorption properties of chitosan.

    abstract::In the present work, chitosan physicochemical transformations that occur during high energy ball milling are investigated and correlated with adsorption capacity of organic pollutants (using azo-dye reactive red 2 as molecular probe). Experimental results reveal that chitosan ball milled for 1 h shows a 70% increase o...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.01.171

    authors: Qiu W,Vakili M,Cagnetta G,Huang J,Yu G

    更新日期:2020-04-01 00:00:00

  • Characterization of a novel oligomeric SGNH-arylesterase from Sinorhizobium meliloti 1021.

    abstract::A novel oligomeric SGNH-arylesterase (Sm23) from Sinorhizobium meliloti 1021 was characterized using biochemical and biophysical methods. A sequence comparison of Sm23 with other SGNH members confirmed the presence of catalytic triad (Ser(10), Asp(187), and His(190)) and oxyanion holes (Ser(10)-Gly(50)-Asn(90)). The w...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2009.12.010

    authors: Hwang H,Kim S,Yoon S,Ryu Y,Lee SY,Kim TD

    更新日期:2010-03-01 00:00:00

  • Phosphorylated Codonopsis pilosula polysaccharide could inhibit the virulence of duck hepatitis A virus compared with Codonopsis pilosula polysaccharide.

    abstract::To screen effective anti-duck hepatitis A virus (DHAV) drugs, we applied STMP-STPP method to prepare phosphorylated Codonopsis pilosula polysaccharide (pCPPS), the phosphorylation-modified product of Codonopsis pilosula polysaccharide (CPPS). The IR spectrum and field emission scanning electron microscope (FE-SEM) wer...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.10.002

    authors: Ming K,Chen Y,Yao F,Shi J,Yang J,Du H,Wang X,Wang Y,Liu J

    更新日期:2017-01-01 00:00:00

  • Protective effects of Ulva pertusa polysaccharide and polysaccharide‑iron (III) complex on cyclophosphamide induced immunosuppression in mice.

    abstract::A water-soluble polysaccharide was isolated from marine green algae Ulva pertusa and then chelated with iron to prepare the polysaccharide‑iron (III) complex. The immunomodulatory activities of sulfated polysaccharide and polysaccharide‑iron (III) complex were investigated through a mice immune-deficiency model. Cyclo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.04.101

    authors: Gao X,Qu H,Gao Z,Zeng D,Wang J,Baranenko D,Li Y,Lu W

    更新日期:2019-07-15 00:00:00

  • Chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide-stimulated RAW264.7 macrophage.

    abstract::This study was designed to study the chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide (LPS)-stimulated RAW264.7 macrophage. A new elution (0.3% NaCl aqueous solution) of Cyclocarya paliurus polysaccharide (CPP-3) was characterized by different methods such as fo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.10.055

    authors: Xiong L,Ouyang KH,Jiang Y,Yang ZW,Hu WB,Chen H,Wang N,Liu X,Wang WJ

    更新日期:2018-02-01 00:00:00

  • Changes in the degree of polymerization of wood celluloses during dilute acid hydrolysis and TEMPO-mediated oxidation: Formation mechanism of disordered regions along each cellulose microfibril.

    abstract::Most commercially available plant celluloses, such as kraft pulps and cotton celluloses, have so-called leveling-off degrees of polymerization (LODPs) when subjected to dilute acid hydrolysis. The formation of LODPs is hypothesized to be caused by disordered regions that are present periodically along each cellulose m...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.11.078

    authors: Funahashi R,Ono Y,Tanaka R,Yokoi M,Daido K,Inamochi T,Saito T,Horikawa Y,Isogai A

    更新日期:2018-04-01 00:00:00

  • Behavior of bovine serum albumin in the presence of locust bean gum.

    abstract::In the present work, we have studied the structure and thermal stability of bovine serum albumin (BSA)-locust bean gum (LBG) mixture. It was found from the spectral results that the presence of LBG resulted in slightly decreasing the α-helical content and the partly unfolding of the skeleton of BSA. LBG binds to the n...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.12.139

    authors: Zhang H,Wang Y,Wang Y,Sun S,Cao J

    更新日期:2018-05-01 00:00:00

  • Studies on the UV spectrum of poly(γ-glutamic acid) based on development of a simple quantitative method.

    abstract::A simple and valid ultraviolet (UV) spectrophotometric method for the determination of poly(γ-glutamic acid) is developed. The method is based on the UV absorption spectrum of γ-PGA in aqueous solution, which exhibits a maximum absorption wavelength at 216 nm. The results obtained were comparable to those obtained wit...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2012.04.005

    authors: Zeng W,Chen G,Zhang Y,Wu K,Liang Z

    更新日期:2012-07-01 00:00:00

  • Antioxidant activities potential of tea polysaccharide fractions obtained by ultra filtration.

    abstract::Three polysaccharide fractions (TPS1, TPS2 and TPS3) with different molecular weights were obtained using ultra filtration membranes from crude tea polysaccharide (CTPS) extracted from abandoned lower grade tea leaves. Each fraction contained different contents of neutral sugar, uronic acid, protein, and total polyphe...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2011.12.028

    authors: Wang Y,Yang Z,Wei X

    更新日期:2012-04-01 00:00:00

  • Biochemical analysis and hypoglycemic activity of a polysaccharide isolated from the fruit of Lycium barbarum L.

    abstract::Purification, characterization and hypoglycemic activities of polysaccharide from Lycium barbarum L. were investigated in this study. A water soluble polysaccharide (LBP) was obtained with ultrafiltration membranes separation, which was further purified by chromatography of DEAE cellulose column and Sephadex G-150 to ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.03.026

    authors: Tang HL,Chen C,Wang SK,Sun GJ

    更新日期:2015-01-01 00:00:00

  • Phenothiazine-chitosan based eco-adsorbents: A special design for mercury removal and fast naked eye detection.

    abstract::The aim of the paper was to investigate the ability of an eco-friendly luminescent xerogel prepared by chitosan crosslinking with a phenothiazine luminogen to detect and remove heavy metals. Its ability to give a divergent morphological and optical response towards fifteen environmental relevant metals was investigate...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.07.232

    authors: Bejan A,Doroftei F,Cheng X,Marin L

    更新日期:2020-11-01 00:00:00

  • Basic Helix-Loop-Helix (bHLH) transcription factor family in Yellow horn (Xanthoceras sorbifolia Bunge): Genome-wide characterization, chromosome location, phylogeny, structures and expression patterns.

    abstract::Yellow horn (Xanthoceras sorbifolia Bunge) is a oil-rich, woody deciduous shrub with exceptional economic and ecological values. Basic Helix-Loop-Helix (bHLH) transcription factor (TF) family fulfills crucial biological functions in plant. However, genome-wide survey of the bHLH genes in yellow horn has not been perfo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.05.253

    authors: Lang Y,Liu Z

    更新日期:2020-10-01 00:00:00

  • UV-mediated synthesis of carboxymethyl cellulose/poly-N-isopropylacrylamide composite hydrogels with triple stimuli-responsive swelling performances.

    abstract::Carboxymethyl cellulose (CMC)/pPoly-N-isopropylacrylamide (PNIPAM) hydrogels were prepared using nanoclay as physical cross-linker by UV irradiation. PNIPAM/CMC hydrogels exhibit 3D network structures with high porosity. PNIPAM/CMC hydrogels exhibit not only high water absorption capacity, but also temperature, pH and...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.06.094

    authors: Su C,Liu J,Yang Z,Jiang L,Liu X,Shao W

    更新日期:2020-10-15 00:00:00

  • In situ preparation of glycoconjugate hollow microspheres mimics the extracellular matrix via interfacial polymerization.

    abstract::A novel chitin-graft-polyleucine microsphere with hollow construction was prepared via ring-opening polymerization initiated with chitin based on interfacial protocol. The FT-IR and (1)H NMR analysis demonstrated the conjugation with regulated graft length. The study provided a facile one-step route to obtain microsph...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2008.02.007

    authors: Wang J,Liu C,Chi P

    更新日期:2008-06-01 00:00:00

  • Encapsulation of lipase using magnetic fluorescent calix[4]arene derivatives; improvement of enzyme activity and stability.

    abstract::In this study, iron magnetic nanoparticles capped with fluorescent calixarene derivatives (Fe3O4@Calix-2 and Fe3O4@Calix-3) were prepared in one-step using coprecipitation of Fe(II) and Fe(III) in basic solution. Different techniques were used to characterize the synthesized magnetic nanoparticles, such as Fourier Tra...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.04.182

    authors: Ozyilmaz E,Cetinguney S,Yilmaz M

    更新日期:2019-07-15 00:00:00

  • Preparation and characterization of chitosan/gelatin/nanocrystalline cellulose/calcium peroxide films for potential wound dressing applications.

    abstract::In order to improve mechanical properties and biomedical behavior of chitosan-based polymeric films, the effect of nanocrystalline cellulose (NCC) and calcium peroxide (CP) particles on the properties of polymeric films based on chitosan (CS) and gelatin (GL) were investigated in this study. The films were characteriz...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.04.159

    authors: Akhavan-Kharazian N,Izadi-Vasafi H

    更新日期:2019-07-15 00:00:00

  • Gel green fluorescence ssDNA aptasensor based on carbon nanotubes for detection of anthrax protective antigen.

    abstract::Bacillus anthracis, the causative agent of anthrax, is a harmful pathogen with potential ability as a biological weapon which persuades scientists to develop novel methods to detect anthrax from infected resources. In this study, a multi-walled carbon nanotube (MWCNTs)-based fluorescence aptasensor was fabricated to d...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.08.219

    authors: Karimi F,Dabbagh S

    更新日期:2019-11-01 00:00:00

  • Novel processing parameters for the extraction of cellulose nanofibres (CNF) from environmentally benign pineapple leaf fibres (PALF): Structure-property relationships.

    abstract::Development of bio-nanoreinforcement is gaining momentum worldwide nowadays since it contributes much to the green materials era. This paper presents a proposal for reusing the agro waste to produce cellulose nanofibres in an ecofriendly way. The present work aims to isolate cellulose nanofibres (CNF) from pineapple l...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.03.134

    authors: Ravindran L,M S S,Thomas S

    更新日期:2019-06-15 00:00:00

  • Evaluation of amygdalin-loaded alginate-chitosan nanoparticles as biocompatible drug delivery carriers for anticancerous efficacy.

    abstract::Amygdalin, despite possessing anticancerous properties, has been viewed as a controversial choice due to the presence of the cyanide group. Here, we synthesise and investigate the potential of alginate-chitosan nanoparticles (ACNPs) as drug delivery agents for amygdalin encapsulation and its delivery to cancer cells. ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.02.191

    authors: Sohail R,Abbas SR

    更新日期:2020-06-15 00:00:00

  • Immunosensor based on nanocomposite of nanostructured zirconium oxide and gelatin-A.

    abstract::We have reported the studies related to the fabrication of a nanocomposite, comprising of sol-gel derived inorganic zirconium oxide nanoparticles (ZrO2 NPs) and organic biopolymer gelatin-A (GA), deposited on indium-tin-oxide (ITO) coated glass substrate by drop casting method. The GA-ZrO2/ITO electrode was used for i...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.10.074

    authors: Bagbi Y,Sharma A,Bohidar HB,Solanki PR

    更新日期:2016-01-01 00:00:00

  • Synthesized negatively charged macromolecules (NCMs) for the surface modification of anticoagulant membrane biomaterials.

    abstract::A series of negatively charged macromolecules (NCMs) including poly (sulfonated styrene-co-methyl methacrylate) (P(SS-co-MMA)), poly (acrylic acid-co-methyl methacrylate) (P(AA-co-MMA)) and poly (sulfonated styrene-co-acrylic acid-co-methyl methacrylate) (P(SS-co-AA-co-MMA)) are synthesized by reversible addition frag...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2013.01.014

    authors: Ran F,Nie S,Yin Z,Li J,Su B,Sun S,Zhao C

    更新日期:2013-04-01 00:00:00

  • A highly xyloglucan active lytic polysaccharide monooxygenase EpLPMO9A from Eupenicillium parvum 4-14 shows boosting effect on hydrolysis of complex lignocellulosic substrates.

    abstract::The recently identified lytic polysaccharide monooxygenases (LPMOs) are important auxiliary proteins which contribute to lignocellulose biodegradation by oxidatively cleaving the glycosidic bonds in cellulose and other polysaccharides. The vast differences in terms of substrate specificity and regioselectivity within ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.11.177

    authors: Shi Y,Chen K,Long L,Ding S

    更新日期:2021-01-15 00:00:00

  • Knockdown of long non-coding RNA XIST inhibits cell viability and invasion by regulating miR-137/PXN axis in non-small cell lung cancer.

    abstract::Long non-coding RNAs (lncRNAs) may serve as miRNA sponges to modulate the expressions of miRNA target genes. LncRNA X-inactive specific transcript (XIST) has been demonstrated to be upregulated and act as an oncogene in non-small cell lung cancer (NSCLC). However, the sponge role of XIST in NSCLC progression remains l...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.01.022

    authors: Jiang H,Zhang H,Hu X,Li W

    更新日期:2018-05-01 00:00:00

  • A combined molecular dynamic simulation, DFT calculations, and experimental study of the eriochrome black T dye adsorption onto chitosan in aqueous solutions.

    abstract::This study aims to evaluate and understand the adsorption of eriochrome black T (EB) by chitosan extracted from local shrimp shells under different experimental conditions. Chitosan samples were characterized by XRD, SEM, and FTIR. Experimental results indicate that the process was pH-dependent with a high adsorption ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.10.228

    authors: Khnifira M,Boumya W,Abdennouri M,Sadiq M,Achak M,Serdaroğlu G,Kaya S,Şimşek S,Barka N

    更新日期:2021-01-01 00:00:00

  • Partial purification and MALDI-TOF MS analysis of UN1, a tumor antigen membrane glycoprotein.

    abstract::UN1 is a membrane glycoprotein that is expressed in immature human thymocytes, a subpopulation of peripheral T lymphocytes, the HPB acute lymphoblastic leukemia (ALL) T-cell line and fetal thymus. We previously reported the isolation of a monoclonal antibody (UN1 mAb) recognizing the UN1 protein that was classified as...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2006.02.020

    authors: de Laurentiis A,Caterino M,Orrù S,Ruoppolo M,Tuccillo F,Masullo M,Quinto I,Scala G,Pucci P,Palmieri C,Tassone P,Salvatore F,Venuta S

    更新日期:2006-08-15 00:00:00

  • Preparation of chitosan derivative with polyethylene glycol side chains for porous structure without specific processing technique.

    abstract::The graft copolymer, chitosan-g-polyethylene glycol (PEG), was prepared through graft polymerization of PEG chains to chitosan due to the esterification reaction between PEG and 6-O-succinate-N-phthaloyl-chitosan (PHCSSA). The graft copolymer with porous structure was observed from scanning electron micrographs. It is...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2006.02.008

    authors: Huang M,Liu L,Zhang G,Yuan G,Fang Y

    更新日期:2006-05-30 00:00:00

  • Evaluation of the mucoadhesive properties of chitosan nanoparticles prepared using different chitosan to tripolyphosphate (CS:TPP) ratios.

    abstract::Mucoadhesive molecules such as chitosan, can allow targeting of a particular tissue to prolong residence time and subsequently improve bioavailability. The purpose of this study was to investigate chitosan-tripolyphosphate (CS:TPP) nanoparticles and to evaluate the interaction between nanoparticles of different CS:TPP...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.09.185

    authors: Hejjaji EMA,Smith AM,Morris GA

    更新日期:2018-12-01 00:00:00

  • Use of guar gum, gum arabic, pectin, beta-glucan and inulin for microencapsulation of anthocyanins from chokeberry.

    abstract::The aim of this study was to use micro-encapsulation technology to create microcapsules containing anthocyanins from chokeberry with guar gum, gum arabic, pectin, β-glucan and inulin as wall material. Aqueous extracts from chokeberry fruit were enclosed and spray dried using maltodextrin as a coating material with the...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.02.073

    authors: Pieczykolan E,Kurek MA

    更新日期:2019-05-15 00:00:00