TeloPCR-seq: a high-throughput sequencing approach for telomeres.

Abstract:

:We have developed a high-throughput sequencing approach that enables us to determine terminal telomere sequences from tens of thousands of individual Schizosaccharomyces pombe telomeres. This method provides unprecedented coverage of telomeric sequence complexity in fission yeast. S. pombe telomeres are composed of modular degenerate repeats that can be explained by variation in usage of the TER1 RNA template during reverse transcription. Taking advantage of this deep sequencing approach, we find that 'like' repeat modules are highly correlated within individual telomeres. Moreover, repeat module preference varies with telomere length, suggesting that existing repeats promote the incorporation of like repeats and/or that specific conformations of the telomerase holoenzyme efficiently and/or processively add repeats of like nature. After the loss of telomerase activity, this sequencing and analysis pipeline defines a population of telomeres with altered sequence content. This approach will be adaptable to study telomeric repeats in other organisms and also to interrogate repetitive sequences throughout the genome that are inaccessible to other sequencing methods.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Bennett HW,Liu N,Hu Y,King MC

doi

10.1002/1873-3468.12444

subject

Has Abstract

pub_date

2016-12-01 00:00:00

pages

4159-4170

issue

23

eissn

0014-5793

issn

1873-3468

journal_volume

590

pub_type

信件
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    authors: Hermann R,Doerfler W

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    journal_title:FEBS letters

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    authors: Kärki T,Hakkola E,Hassinen IE,Hiltunen JK

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    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)00089-7

    authors: Taniguchi Y,Hisatomi O,Yoshida M,Tokunaga F

    更新日期:1999-02-19 00:00:00

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    doi:10.1016/0014-5793(85)81079-6

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    更新日期:1985-01-28 00:00:00

  • Nonenzymatic radiolabeling of protein by 32P-containing nucleotides.

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    journal_title:FEBS letters

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    doi:10.1016/0014-5793(86)80106-5

    authors: Schmidt MC,Hanna MM

    更新日期:1986-01-06 00:00:00

  • 5'-Nucleotidase is activated upon cholesterol-depletion of liver plasma membranes.

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    journal_title:FEBS letters

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    doi:10.1016/0014-5793(83)81118-1

    authors: Whetton AD,Houslay MD

    更新日期:1983-06-27 00:00:00

  • Beyond the epithelium: cadherin function in fibrous connective tissues.

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    pub_type: 杂志文章,评审

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    authors: El Sayegh TY,Kapus A,McCulloch CA

    更新日期:2007-01-23 00:00:00

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    abstract::The interaction of bovine pancreatic trypsin inhibitor (BPTI) and bovine tryptase, which are co-localized in the same granules of bovine mast cells, has been analyzed at 30 degrees C in 0.1 M Tris-HCl, pH 8.0. The analysis has unravelled that the functional unit of bovine tryptase is formed of (at least) four binding ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)00286-i

    authors: Fiorucci L,Erba F,Coletta M,Ascoli F

    更新日期:1995-04-17 00:00:00

  • Fibroblast growth factor-10 upregulates Na,K-ATPase via the MAPK pathway.

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    pub_type: 杂志文章

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    authors: Upadhyay D,Lecuona E,Comellas A,Kamp DW,Sznajder JI

    更新日期:2003-06-19 00:00:00

  • Adaptive evolution in the snake venom Kunitz/BPTI protein family.

    abstract::Snake venoms are rich sources of serine proteinase inhibitors that are members of the Kunitz/BPTI (bovine pancreatic trypsin inhibitor) family. However, only a few of their gene sequences have been determined from snakes. We therefore cloned the cDNAs for the trypsin and chymotrypsin inhibitors from a Vipera ammodytes...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(03)00693-8

    authors: Zupunski V,Kordis D,Gubensek F

    更新日期:2003-07-17 00:00:00

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    doi:10.1016/0014-5793(94)01252-0

    authors: Shirvan A,Laskar O,Steiner-Mordoch S,Schuldiner S

    更新日期:1994-12-12 00:00:00

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    authors: Chan Y,Kunkel LM

    更新日期:1997-06-30 00:00:00

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    更新日期:1992-11-23 00:00:00

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    pub_type: 杂志文章

    doi:10.1016/s0014-5793(96)01538-4

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    pub_type: 杂志文章

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    更新日期:1998-01-16 00:00:00

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    doi:10.1016/0014-5793(89)80766-5

    authors: Kinoshita H,Sakiyama H,Tokunaga K,Imajoh-Ohmi S,Hamada Y,Isono K,Sakiyama S

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    pub_type: 杂志文章

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    authors: Jirik FR,Janzen NM,Melhado IG,Harder KW

    更新日期:1990-10-29 00:00:00

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    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)80481-u

    authors: Hernvann A,Aussel C,Cynober L,Moatti N,Ekindjian OG

    更新日期:1992-05-25 00:00:00

  • Reversible inhibition of cytochrome c oxidase, the terminal enzyme of the mitochondrial respiratory chain, by nitric oxide. Implications for neurodegenerative diseases.

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    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)00424-2

    authors: Cleeter MW,Cooper JM,Darley-Usmar VM,Moncada S,Schapira AH

    更新日期:1994-05-23 00:00:00

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    doi:10.1016/j.febslet.2009.03.066

    authors: Adamis PD,Mannarino SC,Eleutherio EC

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    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)00174-8

    authors: Machleidt W,Nägler DK,Assfalg-Machleidt I,Stubbs MT,Fritz H,Auerswald EA

    更新日期:1995-03-20 00:00:00

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    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2005.03.069

    authors: Ohashi N,Yamamoto T,Uchida C,Togawa A,Fukasawa H,Fujigaki Y,Suzuki S,Kitagawa K,Hattori T,Oda T,Hayashi H,Hishida A,Kitagawa M

    更新日期:2005-05-09 00:00:00

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    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2005.06.073

    authors: Ahel D,Slade D,Mocibob M,Söll D,Weygand-Durasevic I

    更新日期:2005-08-15 00:00:00

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    journal_title:FEBS letters

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    doi:10.1016/0014-5793(94)80554-7

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    更新日期:1994-05-02 00:00:00