High-Throughput Screening of Coenzyme Preference Change of Thermophilic 6-Phosphogluconate Dehydrogenase from NADP(+) to NAD(.).

Abstract:

:Coenzyme engineering that changes NAD(P) selectivity of redox enzymes is an important tool in metabolic engineering, synthetic biology, and biocatalysis. Here we developed a high throughput screening method to identify mutants of 6-phosphogluconate dehydrogenase (6PGDH) from a thermophilic bacterium Moorella thermoacetica with reversed coenzyme selectivity from NADP(+) to NAD(+). Colonies of a 6PGDH mutant library growing on the agar plates were treated by heat to minimize the background noise, that is, the deactivation of intracellular dehydrogenases, degradation of inherent NAD(P)H, and disruption of cell membrane. The melted agarose solution containing a redox dye tetranitroblue tetrazolium (TNBT), phenazine methosulfate (PMS), NAD(+), and 6-phosphogluconate was carefully poured on colonies, forming a second semi-solid layer. More active 6PGDH mutants were examined via an enzyme-linked TNBT-PMS colorimetric assay. Positive mutants were recovered by direct extraction of plasmid from dead cell colonies followed by plasmid transformation into E. coli TOP10. By utilizing this double-layer screening method, six positive mutants were obtained from two-round saturation mutagenesis. The best mutant 6PGDH A30D/R31I/T32I exhibited a 4,278-fold reversal of coenzyme selectivity from NADP(+) to NAD(+). This screening method could be widely used to detect numerous redox enzymes, particularly for thermophilic ones, which can generate NAD(P)H reacted with the redox dye TNBT.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Huang R,Chen H,Zhong C,Kim JE,Zhang YH

doi

10.1038/srep32644

subject

Has Abstract

pub_date

2016-09-02 00:00:00

pages

32644

issn

2045-2322

pii

srep32644

journal_volume

6

pub_type

杂志文章
  • The formation of chromatin domains involves a primary step based on the 3-D structure of DNA.

    abstract::The general model presented here for the formation of chromatin domains, LADs and TADs, is primarily based on the 3-D structures of the corresponding DNA sequences, the GC-poor and GC-rich isochores. Indeed, the low-heterogeneity GC-poor isochores locally are intrinsically stiff and curved because of the presence of i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35851-0

    authors: Bernardi G

    更新日期:2018-12-13 00:00:00

  • Whole-genome sequencing of the endangered bovine species Gayal (Bos frontalis) provides new insights into its genetic features.

    abstract::Gayal (Bos frontalis) is a semi-wild and endangered bovine species that differs from domestic cattle (Bos taurus and Bos indicus), and its genetic background remains unclear. Here, we performed whole-genome sequencing of one Gayal for the first time, with one Red Angus cattle and one Japanese Black cattle as controls....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19787

    authors: Mei C,Wang H,Zhu W,Wang H,Cheng G,Qu K,Guang X,Li A,Zhao C,Yang W,Wang C,Xin Y,Zan L

    更新日期:2016-01-25 00:00:00

  • The importance of spatial heterogeneity and self-restraint on mutualism stability - a quantitative review.

    abstract::Understanding the factors that enable mutualisms to evolve and to subsequently remain stable over time, is essential to fully understand patterns of global biodiversity and for evidence based conservation policy. Theoretically, spatial heterogeneity of mutualists, through increased likelihood of fidelity between coope...

    journal_title:Scientific reports

    pub_type: 杂志文章,评审

    doi:10.1038/srep14826

    authors: Wang RW,Dunn DW,Luo J,He JZ,Shi L

    更新日期:2015-10-05 00:00:00

  • Switching of magnetic easy-axis using crystal orientation for large perpendicular coercivity in CoFe2O4 thin film.

    abstract::Perpendicular magnetization and precise control over the magnetic easy axis in magnetic thin film is necessary for a variety of applications, particularly in magnetic recording media. A strong (111) orientation is successfully achieved in the CoFe2O4 (CFO) thin film at relatively low substrate temperature of 100 °C, w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30074

    authors: Shirsath SE,Liu X,Yasukawa Y,Li S,Morisako A

    更新日期:2016-07-20 00:00:00

  • Predominant role of interferon-γ in the host protective effect of CD8(+) T cells against Neospora caninum infection.

    abstract::It is well established that CD8(+) T cells play an important role in protective immunity against protozoan infections. However, their role in the course of Neospora caninum infection has not been fully elucidated. Here we report that CD8-deficient mice infected with N. caninum presented higher parasitic loads in the b...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14913

    authors: Correia A,Ferreirinha P,Botelho S,Belinha A,Leitão C,Caramalho Í,Teixeira L,González-Fernandéz Á,Appelberg R,Vilanova M

    更新日期:2015-10-09 00:00:00

  • Long-tip high-speed atomic force microscopy for nanometer-scale imaging in live cells.

    abstract::Visualization of morphological dynamics of live cells with nanometer resolution under physiological conditions is highly desired, but challenging. It has been demonstrated that high-speed atomic force microscopy is a powerful technique for visualizing dynamics of biomolecules under physiological conditions. However, a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08724

    authors: Shibata M,Uchihashi T,Ando T,Yasuda R

    更新日期:2015-03-04 00:00:00

  • Acute LPS sensitization and continuous infusion exacerbates hypoxic brain injury in a piglet model of neonatal encephalopathy.

    abstract::Co-existing infection/inflammation and birth asphyxia potentiate the risk of developing neonatal encephalopathy (NE) and adverse outcome. In a newborn piglet model we assessed the effect of E. coli lipopolysaccharide (LPS) infusion started 4 h prior to and continued for 48 h after hypoxia on brain cell death and syste...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46488-y

    authors: Martinello KA,Meehan C,Avdic-Belltheus A,Lingam I,Ragab S,Hristova M,Tann CJ,Peebles D,Hagberg H,Wolfs TGAM,Klein N,Tachtsidis I,Golay X,Kramer BW,Fleiss B,Gressens P,Robertson NJ

    更新日期:2019-07-15 00:00:00

  • Identification and Documentation of Auricle Defects using Three-dimensional Optical Measurements.

    abstract::Auricle defects are important and common occurrences in forensic medicine. The accurate measurement and assessment of auricle defects is key to identifying and evaluating injury, and the currently available methods are known to be labor intensive and inaccurate. In this paper, we introduce an identification and docume...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21289-x

    authors: Zhan G,Han L,Li Z,Liu Z,Fu J,Zhong K

    更新日期:2018-02-12 00:00:00

  • Implicit Theory of Mind under realistic social circumstances measured with mobile eye-tracking.

    abstract::Recently, there has been a debate whether implicit Theory of Mind can be reliably measured using anticipatory looking tasks. Previous anticipatory looking paradigms used video stimuli to measure implicit Theory of Mind; however, numerous replications of these paradigms were unsuccessful. This lack of replications may ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80614-5

    authors: Kulke L,Hinrichs MAB

    更新日期:2021-01-13 00:00:00

  • Negative reciprocal regulation between Sirt1 and Per2 modulates the circadian clock and aging.

    abstract::Sirtuin 1 (SIRT1) is involved in both aging and circadian-clock regulation, yet the link between the two processes in relation to SIRT1 function is not clear. Using Sirt1-deficient mice, we found that Sirt1 and Period 2 (Per2) constitute a reciprocal negative regulation loop that plays important roles in modulating he...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28633

    authors: Wang RH,Zhao T,Cui K,Hu G,Chen Q,Chen W,Wang XW,Soto-Gutierrez A,Zhao K,Deng CX

    更新日期:2016-06-27 00:00:00

  • Sea-level rise induced amplification of coastal protection design heights.

    abstract::Coastal protection design heights typically consider the superimposed effects of tides, surges, waves, and relative sea-level rise (SLR), neglecting non-linear feedbacks between these forcing factors. Here, we use hydrodynamic modelling and multivariate statistics to show that shallow coastal areas are extremely sensi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40171

    authors: Arns A,Dangendorf S,Jensen J,Talke S,Bender J,Pattiaratchi C

    更新日期:2017-01-06 00:00:00

  • A novel orally bioavailable compound KPT-9274 inhibits PAK4, and blocks triple negative breast cancer tumor growth.

    abstract::Breast cancer is a heterogeneous disease consisting of several subtypes. Among these subtypes, triple negative breast cancer is particularly difficult to treat. This is due to a lack of understanding of the mechanisms behind the disease, and consequently a lack of druggable targets. PAK4 plays critical roles in cell s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42555

    authors: Rane C,Senapedis W,Baloglu E,Landesman Y,Crochiere M,Das-Gupta S,Minden A

    更新日期:2017-02-15 00:00:00

  • Energetic mitochondrial failing in vitiligo and possible rescue by cardiolipin.

    abstract::Vitiligo is characterized by death or functional defects of epidermal melanocytes through still controversial pathogenic process. Previously, we showed that mitochondria-driven pre-senescent phenotype diminishes the capability of vitiligo melanocytes to cope with stressful stimuli. In the current study, we investigate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13961-5

    authors: Dell'Anna ML,Ottaviani M,Kovacs D,Mirabilii S,Brown DA,Cota C,Migliano E,Bastonini E,Bellei B,Cardinali G,Ricciardi MR,Tafuri A,Picardo M

    更新日期:2017-10-20 00:00:00

  • Roles of different types of oxalate surface complexes in dissolution process of ferrihydrite aggregates.

    abstract::The dissolution of ferrihydrite induced by low molar mass (LMM) organics is an important process that provides bioavailable iron for organisms. Here, ATR-FTIR analysis was combined with characterization of ferrihydrite nanoparticles and kinetic modeling to investigate the roles of different oxalate surface complex spe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20401-5

    authors: Li F,Koopal L,Tan W

    更新日期:2018-02-01 00:00:00

  • Microgel assisted Lab-on-Fiber Optrode.

    abstract::Precision medicine is continuously demanding for novel point of care systems, potentially exploitable also for in-vivo analysis. Biosensing probes based on Lab-On-Fiber Technology have been recently developed to meet these challenges. However, devices exploiting standard label-free approaches (based on ligand/target m...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14852-5

    authors: Aliberti A,Ricciardi A,Giaquinto M,Micco A,Bobeico E,La Ferrara V,Ruvo M,Cutolo A,Cusano A

    更新日期:2017-10-31 00:00:00

  • Role of agonistic autoantibodies against type-1 angiotensin II receptor in the pathogenesis of retinopathy in preeclampsia.

    abstract::To investigate the mechanism underlying AT1-AA-induced retinopathy in severe preeclampsia by measuring the positive rate and titer of AT1-AA in plasma from women with severe preeclampsia and normal pregnant women to see whether AT1-AA titer was correlated with the grade of retinopathy. A preeclampsia rat model was als...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29036

    authors: Liu F,Wang Y,Wang X,Zheng Y,Jin Z,Zhi J

    更新日期:2016-07-06 00:00:00

  • X-ray induced dimerization of cinnamic acid: Time-resolved inelastic X-ray scattering study.

    abstract::A classic example of solid-state topochemical reactions is the ultraviolet-light induced photodimerization of α-trans-cinnamic acid (CA). Here, we report the first observation of an X-ray-induced dimerization of CA and monitor it in situ using nonresonant inelastic X-ray scattering spectroscopy (NRIXS). The time-evolu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15851

    authors: Inkinen J,Niskanen J,Talka T,Sahle CJ,Müller H,Khriachtchev L,Hashemi J,Akbari A,Hakala M,Huotari S

    更新日期:2015-11-16 00:00:00

  • Microsphere-mediated optical contrast tuning for designing imaging systems with adjustable resolution gain.

    abstract::Upon illumination, a dielectric microsphere (μS) can generate a photonic nanojet (PNJ), which plays a role in the super-resolution imaging of a sample placed in the μS's immediate proximity. Recent microscopy implementations pioneered this concept but, despite the experimental characterization and theoretical modeling...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33604-7

    authors: Migliozzi D,Gijs MAM,Huszka G

    更新日期:2018-10-12 00:00:00

  • Detection of QTNs for kernel moisture concentration and kernel dehydration rate before physiological maturity in maize using multi-locus GWAS.

    abstract::Maize is China's largest grain crop. Mechanical grain harvesting is the key technology in maize production, and the kernel moisture concentration (KMC) is the main controlling factor in mechanical maize harvesting in China. The kernel dehydration rate (KDR) is closely related to the KMC. Thus, it is important to condu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80391-1

    authors: Li S,Zhang C,Yang D,Lu M,Qian Y,Jin F,Liu X,Wang Y,Liu W,Li X

    更新日期:2021-01-19 00:00:00

  • Different extent in decline of infant mortality by region and cause in Shenyang, China.

    abstract::To compare the pattern of cause of death of infant mortality rates by urban/rural areas as well as to generate knowledge for potential strategies to decrease this mortality, we carried out a study by analyzing the infant mortality data from the Shenyang Women and Children Health Care Centre. From 1997 to 2014, 970,583...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24527

    authors: Huang YH,Wu QJ,Li LL,Li D,Li J,Zhou C,Wu L,Zhu J,Gong TT

    更新日期:2016-04-14 00:00:00

  • The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome.

    abstract::Haemonchus contortus is arguably the most injurious helminth parasite for small ruminants. We characterized the impact of H. contortus infection on the caprine abomasal microbiome. Fourteen parasite naive goats were inoculated with 5,000 H. contortus infective larvae and followed for 50 days. Six age-matched naïve goa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20606

    authors: Li RW,Li W,Sun J,Yu P,Baldwin RL,Urban JF

    更新日期:2016-02-08 00:00:00

  • Pelota-interacting G protein Hbs1 is required for spermatogenesis in Drosophila.

    abstract::Hbs1, which is homologous to the GTPase eRF3, is a small G protein implicated in mRNA quality control. It interacts with a translation-release factor 1-like protein Dom34/Pelota to direct decay of mRNAs with ribosomal stalls. Although both proteins are evolutionarily conserved in eukaryotes, the biological function of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-39530-6

    authors: Li Z,Yang F,Xuan Y,Xi R,Zhao R

    更新日期:2019-03-01 00:00:00

  • Liposome-mediated delivery of challenging chemicals to aid environmental assessment of Bioaccumulative (B) and Toxic (T) properties.

    abstract::Standard aquatic toxicity tests of chemicals are often limited by the chemicals' water solubility. Liposomes have been widely used in the pharmaceutical industry to overcome poor pharmacokinetics and biodistribution. In this work, liposomes were synthesized and used in an ecotoxicological context, as a tool to assure ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66694-3

    authors: Castro M,Lindqvist D

    更新日期:2020-06-16 00:00:00

  • Molecular mechanism of male differentiation is conserved in the SRY-absent mammal, Tokudaia osimensis.

    abstract::The sex-determining gene SRY induces SOX9 expression in the testes of eutherian mammals via two pathways. SRY binds to testis-specific enhancer of Sox9 (TESCO) with SF1 to activate SOX9 transcription. SRY also up-regulates ER71 expression, and ER71 activates Sox9 transcription. After the initiation of testis different...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep32874

    authors: Otake T,Kuroiwa A

    更新日期:2016-09-09 00:00:00

  • Efficient single-pixel multispectral imaging via non-mechanical spatio-spectral modulation.

    abstract::Combining spectral imaging with compressive sensing (CS) enables efficient data acquisition by fully utilizing the intrinsic redundancies in natural images. Current compressive multispectral imagers, which are mostly based on array sensors (e.g, CCD or CMOS), suffer from limited spectral range and relatively low photo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41435

    authors: Li Z,Suo J,Hu X,Deng C,Fan J,Dai Q

    更新日期:2017-01-27 00:00:00

  • Long-Term Acclimation to Different Thermal Regimes Affects Molecular Responses to Heat Stress in a Freshwater Clam Corbicula Fluminea.

    abstract::Global climate change (GCC) can negatively affect freshwater ecosystems. However, the degree to which freshwater populations can acclimate to long-term warming and the underlying molecular mechanisms are not yet fully understood. We used the cooling water discharge (CWD) area of a power plant as a model for long-term ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39476

    authors: Falfushynska HI,Phan T,Sokolova IM

    更新日期:2016-12-20 00:00:00

  • Versatile, sensitive liquid chromatography mass spectrometry - Implementation of 10 μm OT columns suitable for small molecules, peptides and proteins.

    abstract::We have designed a versatile and sensitive liquid chromatographic (LC) system, featuring a monolithic trap column and a very narrow (10 μm ID) fused silica open tubular liquid chromatography (OTLC) separation column functionalized with C18-groups, for separating a wide range of molecules (from small metabolites to int...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37507

    authors: Vehus T,Roberg-Larsen H,Waaler J,Aslaksen S,Krauss S,Wilson SR,Lundanes E

    更新日期:2016-11-29 00:00:00

  • Recombinant HIV-1 vaccine candidates based on replication-defective flavivirus vector.

    abstract::Multiple approaches utilizing viral and DNA vectors have shown promise in the development of an effective vaccine against HIV. In this study, an alternative replication-defective flavivirus vector, RepliVax (RV), was evaluated for the delivery of HIV-1 immunogens. Recombinant RV-HIV viruses were engineered to stably e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56550-4

    authors: Giel-Moloney M,Esteban M,Oakes BH,Vaine M,Asbach B,Wagner R,Mize GJ,Spies AG,McElrath J,Perreau M,Roger T,Ives A,Calandra T,Weiss D,Perdiguero B,Kibler KV,Jacobs B,Ding S,Tomaras GD,Montefiori DC,Ferrari G,Yates

    更新日期:2019-12-27 00:00:00

  • Variable impact of the hemagglutinin polybasic cleavage site on virulence and pathogenesis of avian influenza H7N7 virus in chickens, turkeys and ducks.

    abstract::Avian influenza viruses (AIV) are classified into 16 hemagglutinin (HA; H1-H16) and 9 neuraminidase (NA; N1-N9) subtypes. All AIV are low pathogenic (LP) in birds, but subtypes H5 and H7 AIV can evolve into highly pathogenic (HP) forms. In the last two decades evolution of HPAIV H7 from LPAIV has been frequently repor...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47938-3

    authors: Scheibner D,Ulrich R,Fatola OI,Graaf A,Gischke M,Salaheldin AH,Harder TC,Veits J,Mettenleiter TC,Abdelwhab EM

    更新日期:2019-08-09 00:00:00

  • A model of the entrance pupil of the human eye.

    abstract::The aperture stop of the iris is subject to refraction by the cornea, and thus an outside observer sees a virtual image: the "entrance pupil" of the eye. When viewed off-axis, the entrance pupil has an elliptical form. The precise appearance of the entrance pupil is a consequence of the anatomical and optical properti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45827-3

    authors: Aguirre GK

    更新日期:2019-06-27 00:00:00