Virtual microfluidics for digital quantification and single-cell sequencing.

Abstract:

:We have developed hydrogel-based virtual microfluidics as a simple and robust alternative to complex engineered microfluidic systems for the compartmentalization of nucleic acid amplification reactions. We applied in-gel digital multiple displacement amplification (dMDA) to purified DNA templates, cultured bacterial cells and human microbiome samples in the virtual microfluidics system, and demonstrated whole-genome sequencing of single-cell MDA products with excellent coverage uniformity and markedly reduced chimerism compared with products of liquid MDA reactions.

journal_name

Nat Methods

journal_title

Nature methods

authors

Xu L,Brito IL,Alm EJ,Blainey PC

doi

10.1038/nmeth.3955

subject

Has Abstract

pub_date

2016-09-01 00:00:00

pages

759-62

issue

9

eissn

1548-7091

issn

1548-7105

pii

nmeth.3955

journal_volume

13

pub_type

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