GC-MS-Based Metabolome and Metabolite Regulation in Serum-Resistant Streptococcus agalactiae.

Abstract:

:Streptococcus agalactiae causes severe systemic infections in human and fish. In the present study, we established a pathogen-plasma interaction model by which we explored how S. agalactiae evaded serum-mediated killing. We found that S. agalactiae grew faster in the presence of yellow grouper plasma than in the absence of the plasma, indicating S. agalactiae evolved a way of evading the fish immune system. To determine the events underlying this phenotype, we applied GC-MS-based metabolomics approaches to identify differential metabolomes between S. agalactiae cultured with and without yellow grouper plasma. Through bioinformatics analysis, decreased malic acid and increased adenosine were identified as the most crucial metabolites that distinguish the two groups. Meanwhile, they presented with decreased TCA cycle and elevated purine metabolism, respectively. Finally, exogenous malic acid and adenosine were used to reprogram the plasma-resistant metabolome, leading to elevated and decreased susceptibility to the plasma, respectively. Therefore, our findings reveal for the first time that S. agalactiae utilizes a metabolic trick to respond to plasma killing as a result of serum resistance, which may be reverted or enhanced by exogenous malic acid and adenosine, respectively, suggesting that the metabolic trick can be regulated by metabolites.

journal_name

J Proteome Res

authors

Wang Z,Li MY,Peng B,Cheng ZX,Li H,Peng XX

doi

10.1021/acs.jproteome.6b00215

subject

Has Abstract

pub_date

2016-07-01 00:00:00

pages

2246-53

issue

7

eissn

1535-3893

issn

1535-3907

journal_volume

15

pub_type

杂志文章
  • Plasma metabonomics as a novel diagnostic approach for major depressive disorder.

    abstract::Major depressive disorder (MDD) is a socially detrimental psychiatric disorder, contributing to increased healthcare expenditures and suicide rates. However, no empirical laboratory-based tests are available to support the diagnosis of MDD. In this study, a NMR-based plasma metabonomic method for the diagnosis of MDD ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2010082

    authors: Zheng P,Gao HC,Li Q,Shao WH,Zhang ML,Cheng K,Yang DY,Fan SH,Chen L,Fang L,Xie P

    更新日期:2012-03-02 00:00:00

  • Genome-Wide Functional Annotation of Human Protein-Coding Splice Variants Using Multiple Instance Learning.

    abstract::The vast majority of human multiexon genes undergo alternative splicing and produce a variety of splice variant transcripts and proteins, which can perform different functions. These protein-coding splice variants (PCSVs) greatly increase the functional diversity of proteins. Most functional annotation algorithms have...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00883

    authors: Panwar B,Menon R,Eksi R,Li HD,Omenn GS,Guan Y

    更新日期:2016-06-03 00:00:00

  • Quantitative proteome analysis using differential stable isotopic labeling and microbore LC-MALDI MS and MS/MS.

    abstract::We demonstrate an approach for global quantitative analysis of protein mixtures using differential stable isotopic labeling of the enzyme-digested peptides combined with microbore liquid chromatography (LC) matrix-assisted laser desorption ionization (MALDI) mass spectrometry (MS). Microbore LC provides higher sample ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr049784w

    authors: Ji C,Li L

    更新日期:2005-05-01 00:00:00

  • Metabolic regulatory network alterations in response to acute cold stress and ginsenoside intervention.

    abstract::Acute stress may trigger systemic biochemical and physiological changes in living organisms, leading to a rapid loss of homeostasis, which can be gradually reinstated by self-regulatory mechanisms and/or drug intervention strategy. However, such a sophisticated metabolic regulatory process has so far been poorly under...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070051w

    authors: Wang X,Su M,Qiu Y,Ni Y,Zhao T,Zhou M,Zhao A,Yang S,Zhao L,Jia W

    更新日期:2007-09-01 00:00:00

  • Deciphering the Molecular Diversity of an Ant Venom Peptidome through a Venomics Approach.

    abstract::The peptide toxins in the venoms of small invertebrates such as stinging ants have rarely been studied due to the limited amount of venom available per individual. We used a venomics strategy to identify the molecular diversity of the venom peptidome for the myrmicine ant Tetramorium bicarinatum. The methodology inclu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00452

    authors: Touchard A,Téné N,Song PCT,Lefranc B,Leprince J,Treilhou M,Bonnafé E

    更新日期:2018-10-05 00:00:00

  • Analysis of genomic and proteomic data using advanced literature mining.

    abstract::High-throughput technologies, such as proteomic screening and DNA micro-arrays, produce vast amounts of data requiring comprehensive analytical methods to decipher the biologically relevant results. One approach would be to manually search the biomedical literature; however, this would be an arduous task. We developed...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0340227

    authors: Hu Y,Hines LM,Weng H,Zuo D,Rivera M,Richardson A,LaBaer J

    更新日期:2003-07-01 00:00:00

  • Parallel tandem: a program for parallel processing of tandem mass spectra using PVM or MPI and X!Tandem.

    abstract::A method for the rapid correlation of tandem mass spectra to a list of protein sequences in a database has been developed. The combination of the fast and accurate computational search algorithm, X!Tandem, and a Linux cluster parallel computing environment with PVM or MPI, significantly reduces the time required to pe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050058i

    authors: Duncan DT,Craig R,Link AJ

    更新日期:2005-09-01 00:00:00

  • Changes in the striatal proteome of YAC128Q mice exhibit gene-environment interactions between mutant huntingtin and manganese.

    abstract::Huntington's disease (HD) is a neurodegenerative disorder caused by expansion of a CAG repeat within the Huntingtin (HTT) gene, though the clinical presentation of disease and age-of-onset are strongly influenced by ill-defined environmental factors. We recently reported a gene-environment interaction wherein expressi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200839d

    authors: Wegrzynowicz M,Holt HK,Friedman DB,Bowman AB

    更新日期:2012-02-03 00:00:00

  • Mycobacterium tuberculosis-specific phagosome proteome and underlying signaling pathways.

    abstract::The phagosome is very important to host immunity and tissue homeostasis maintenance. The destiny of the phagosome is closely associated with the outcome of the pathogen within. Most pathogens are successfully delivered to the lysosome and destroyed via the fusion of the phagosome with the lysosome. Mycobacterium tube...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr300125t

    authors: He Y,Li W,Liao G,Xie J

    更新日期:2012-05-04 00:00:00

  • Intrinsic disorder in nuclear hormone receptors.

    abstract::Many proteins possess intrinsic disorder (ID) and lack a rigid three-dimensional structure in at least part of their sequence. ID has been hypothesized to influence protein-protein and protein-ligand interactions. We calculated ID for nearly 400 vertebrate and invertebrate members of the biomedically important nuclear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003024

    authors: Krasowski MD,Reschly EJ,Ekins S

    更新日期:2008-10-01 00:00:00

  • Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.

    abstract::A proteoform family is a group of related molecular forms of a protein (proteoforms) derived from the same gene. We have previously described a strategy to identify proteoforms and elucidate proteoform families in complex mixtures of intact proteins. The strategy is based upon measurements of two properties for each p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00516

    authors: Dai Y,Shortreed MR,Scalf M,Frey BL,Cesnik AJ,Solntsev S,Schaffer LV,Smith LM

    更新日期:2017-11-03 00:00:00

  • Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics.

    abstract::Transient cerebral ischemia dramatically activates small ubiquitin-like modifier (SUMO2/3) conjugation. In cells exposed to 6 h of transient oxygen/glucose deprivation (OGD), a model of ischemia, SUMOylation increases profoundly between 0 and 30 min following re-oxygenation. To elucidate the effect of transient OGD on...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200834f

    authors: Yang W,Thompson JW,Wang Z,Wang L,Sheng H,Foster MW,Moseley MA,Paschen W

    更新日期:2012-02-03 00:00:00

  • Cytoplasmic proteome and secretome profiles of differently stimulated human dendritic cells.

    abstract::Dendritic cells (DCs), the most potent and specialized antigen-presenting cells, play a key role in the regulation of the adaptive immunity. Immature DCs were generated by in vitro culturing of peripheral blood monocytes and functionally activated with the classical pathogen-associated molecular pattern lipopolysaccha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8011039

    authors: Gundacker NC,Haudek VJ,Wimmer H,Slany A,Griss J,Bochkov V,Zielinski C,Wagner O,Stöckl J,Gerner C

    更新日期:2009-06-01 00:00:00

  • ESI-MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts.

    abstract::Glioblastoma (GBM) is the most common adult primary brain tumor. Despite aggressive multimodal therapy, the survival of patients with GBM remains dismal. However, recent evidence has demonstrated the promise of bone marrow-derived mesenchymal stem cells (BM-hMSCs) as a therapeutic delivery vehicle for anti-glioma agen...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00076

    authors: Wildburger NC,Wood PL,Gumin J,Lichti CF,Emmett MR,Lang FF,Nilsson CL

    更新日期:2015-06-05 00:00:00

  • Impact of rpoS deletion on the proteome of Escherichia coli grown planktonically and as biofilm.

    abstract::To investigate the role of rpoS in gene expression of Escherichia coli cells grown as biofilms, we compared the proteomes of a rpoS mutant and the wild-type strain. Experiments were performed on planktonic cells (in exponential or stationary growth phase) and biofilms developed on glass wool. Spot-by-spot comparison o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8001723

    authors: Collet A,Cosette P,Beloin C,Ghigo JM,Rihouey C,Lerouge P,Junter GA,Jouenne T

    更新日期:2008-11-01 00:00:00

  • Proteome profiling and functional classification of intracellular proteins from conidia of the human-pathogenic mold Aspergillus fumigatus.

    abstract::Aspergillus fumigatus is a ubiquitously distributed filamentous fungus that has emerged as one of the most serious life-threatening pathogens in immunocompromised patients. The mechanisms for its pathogenicity are poorly understood. Here, we analyzed the proteome of dormant A. fumigatus conidia as the fungal entity ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9010684

    authors: Teutschbein J,Albrecht D,Pötsch M,Guthke R,Aimanianda V,Clavaud C,Latgé JP,Brakhage AA,Kniemeyer O

    更新日期:2010-07-02 00:00:00

  • Epsilon-Q: An Automated Analyzer Interface for Mass Spectral Library Search and Label-Free Protein Quantification.

    abstract::Mass spectrometry (MS) is a widely used proteome analysis tool for biomedical science. In an MS-based bottom-up proteomic approach to protein identification, sequence database (DB) searching has been routinely used because of its simplicity and convenience. However, searching a sequence DB with multiple variable modif...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b01019

    authors: Cho JY,Lee HJ,Jeong SK,Paik YK

    更新日期:2017-12-01 00:00:00

  • Sequential analysis of N- and O-linked glycosylation of 2D-PAGE separated glycoproteins.

    abstract::A robust method has been developed that allows analysis of both N- and O-linked oligosaccharides released from glycoproteins separated using 2D-PAGE and then electroblotted to PVDF membrane. This analysis provides efficient oligosaccharide profiling applicable to glycoproteomic analysis. The method involves the enzyma...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr025538d

    authors: Wilson NL,Schulz BL,Karlsson NG,Packer NH

    更新日期:2002-11-01 00:00:00

  • Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling.

    abstract::Reliable statistical validation of peptide and protein identifications is a top priority in large-scale mass spectrometry based proteomics. PeptideProphet is one of the computational tools commonly used for assessing the statistical confidence in peptide assignments to tandem mass spectra obtained using database searc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7006818

    authors: Choi H,Ghosh D,Nesvizhskii AI

    更新日期:2008-01-01 00:00:00

  • Latent biochemical relationships in the blood-milk metabolic axis of dairy cows revealed by statistical integration of 1H NMR spectroscopic data.

    abstract::A detailed understanding of the relationships between the distinct metabolic compartments of blood and milk would be of potential benefit to our understanding of the physiology of lactation, and potentially for development of biomarkers for health and commercially relevant traits in dairy cattle. NMR methods were used...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr301056q

    authors: Maher AD,Hayes B,Cocks B,Marett L,Wales WJ,Rochfort SJ

    更新日期:2013-03-01 00:00:00

  • Multiplexed Quantitative Proteomic Analysis of HEK293 Provides Insights into Molecular Changes Associated with the Cell Density Effect, Transient Transfection, and Virus-Like Particle Production.

    abstract::The production of virus-like particles (VLPs) has gained importance over the last few years owing to the benefits they provide compared to conventional vaccines. The biopharmaceutical industry is currently searching for safer candidates based on VLPs for new and existing vaccines and implementing new methods of manufa...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00601

    authors: Lavado-García J,Jorge I,Cervera L,Vázquez J,Gòdia F

    更新日期:2020-03-06 00:00:00

  • Evolutionary conservation of mammalian sperm proteins associates with overall, not tyrosine, phosphorylation in human spermatozoa.

    abstract::We investigated possible associations between sequence evolution of mammalian sperm proteins and their phosphorylation status in humans. As a reference, spermatozoa from three normozoospermic men were analyzed combining two-dimensional gel electrophoresis, immunoblotting, and mass spectrometry. We identified 99 sperm ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400228c

    authors: Schumacher J,Ramljak S,Asif AR,Schaffrath M,Zischler H,Herlyn H

    更新日期:2013-12-06 00:00:00

  • Quantitative Profiling for Substrates of the Mitochondrial Presequence Processing Protease Reveals a Set of Nonsubstrate Proteins Increased upon Proteotoxic Stress.

    abstract::The majority of mitochondrial preproteins are targeted via N-terminal presequences that are cleaved upon import into the organelle. The essential mitochondrial processing protease (MPP) is assumed to cleave the majority of incoming precursors; however, only a small fraction of mitochondrial precursors have been experi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00327

    authors: Burkhart JM,Taskin AA,Zahedi RP,Vögtle FN

    更新日期:2015-11-06 00:00:00

  • Integrative analysis of N-linked human glycoproteomic data sets reveals PTPRF ectodomain as a novel plasma biomarker candidate for prostate cancer.

    abstract::In an attempt to identify prostate cancer biomarkers with greater diagnostic and prognostic capabilities, we have developed an integrative proteomic discovery workflow focused on N-linked glycoproteins that refines the target selection process. In this work, hydrazide-based chemistry was used to identify N-linked glyc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201200n

    authors: Whitmore TE,Peterson A,Holzman T,Eastham A,Amon L,McIntosh M,Ozinsky A,Nelson PS,Martin DB

    更新日期:2012-05-04 00:00:00

  • Proteomic and Glycoproteomic Profilings Reveal That Post-translational Modifications of Toxins Contribute to Venom Phenotype in Snakes.

    abstract::Snake venoms are biological weapon systems composed of secreted proteins and peptides that are used for immobilizing or killing prey. Although post-translational modifications are widely investigated because of their importance in many biological phenomena, we currently still have little understanding of how protein g...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00217

    authors: Andrade-Silva D,Zelanis A,Kitano ES,Junqueira-de-Azevedo IL,Reis MS,Lopes AS,Serrano SM

    更新日期:2016-08-05 00:00:00

  • Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage.

    abstract::Due to the increasing prevalence of nosocomial and community-acquired antibiotic resistant Staphylococcus aureus (SA), understanding the determinants of SA nasal carriage has become a major imperative. Previous research has revealed many host and bacterial factors that contribute to SA nasal carriage. To assess bacter...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200029r

    authors: Muthukrishnan G,Quinn GA,Lamers RP,Diaz C,Cole AL,Chen S,Cole AM

    更新日期:2011-04-01 00:00:00

  • A regularized method for peptide quantification.

    abstract::Peptide abundance estimation is generally the first step in protein quantification. In peptide abundance estimation, peptide overlapping and peak intensity variation are two challenges. The main objective of this paper is to estimate peptide abundance by taking advantage of peptide isotopic distribution and smoothness...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100181g

    authors: Yang C,Yang C,Yu W

    更新日期:2010-05-07 00:00:00

  • Proteome analysis of a hepatocyte-specific BIRC5 (survivin)-knockout mouse model during liver regeneration.

    abstract::The Baculoviral IAP repeat-containing protein 5 (BIRC5), also known as inhibitor of apoptosis protein survivin, is a member of the chromosomal passenger complex and a key player in mitosis. To investigate the function of BIRC5 in liver regeneration, we analyzed a hepatocyte-specific BIRC5-knockout mouse model using a ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401188r

    authors: Bracht T,Hagemann S,Loscha M,Megger DA,Padden J,Eisenacher M,Kuhlmann K,Meyer HE,Baba HA,Sitek B

    更新日期:2014-06-06 00:00:00

  • Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase.

    abstract::POPX2 is a serine/threonine phosphatase belonging to the protein phosphatase 2C (PP2C) family that has been found to be elevated in invasive breast cancer cells. Silencing of POPX2 results in lower cell motility and invasiveness. The molecular mechanism of POPX2-regulated cell motility is not well understood. To ident...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr301113c

    authors: Zhang S,Guo T,Chan H,Sze SK,Koh CG

    更新日期:2013-06-07 00:00:00

  • The COVID-19 Pandemic from a Human Genetic Perspective.

    abstract::The coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has impacted a large portion of the world population. From a virus genetic perspective, a recent study described what genomic data revealed about the origin and emergence of SARS-CoV-2, proposing stronger a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.0c00671

    authors: Zhang YM,Wang L,Liu XZ,Zhang H

    更新日期:2020-11-06 00:00:00