Abstract:
:With the increasing number of protein structures available, there is a need for tools capable of automating the comparison of ensembles of structures, a common requirement in structural biology and bioinformatics. PSSweb is a web server for protein structural statistics. It takes as input an ensemble of PDB files of protein structures, performs a multiple sequence alignment and computes structural statistics for each position of the alignment. Different optional functionalities are proposed: structure superposition, Cartesian coordinate statistics, dihedral angle calculation and statistics, and a cluster analysis based on dihedral angles. An interactive report is generated, containing a summary of the results, tables, figures and 3D visualization of superposed structures. The server is available at http://pssweb.org.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Gaillard T,Stote RH,Dejaegere Adoi
10.1093/nar/gkw332subject
Has Abstractpub_date
2016-07-08 00:00:00pages
W401-5issue
W1eissn
0305-1048issn
1362-4962pii
gkw332journal_volume
44pub_type
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